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SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G31190 | AT | Annotation by Michelle Graham. TAIR10: myo-inositol monophosphatase like 1 | chr1:11144861-11146800 FORWARD LENGTH=371 | SoyBase | E_val: 0 | ISS |
| GO:0000023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maltose metabolic process | SoyBase | N/A | ISS |
| GO:0006790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sulfur compound metabolic process | SoyBase | N/A | ISS |
| GO:0019243 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylglyoxal catabolic process to D-lactate | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0046854 | GO-bp | Annotation by Michelle Graham. GO Biological Process: phosphatidylinositol phosphorylation | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0008441 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'(2'),5'-bisphosphate nucleotidase activity | SoyBase | N/A | ISS |
| GO:0008934 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: inositol monophosphate 1-phosphatase activity | SoyBase | N/A | ISS |
| KOG2951 | KOG | Inositol monophosphatase | JGI | ISS | |
| PTHR20854 | Panther | INOSITOL MONOPHOSPHATASE | JGI | ISS | |
| PTHR20854:SF10 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00459 | PFAM | Inositol monophosphatase family | JGI | ISS | |
| UniRef100_B9SDQ6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Myo inositol monophosphatase, putative n=1 Tax=Ricinus communis RepID=B9SDQ6_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KDC3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDC3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g25880 not represented in the dataset |
Glyma06g25880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g218300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g25880.2 sequence type=transcript gene model=Glyma06g25880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGTTTGCTCAATCTTGGGAACAAATATATCCAAAATTAAAAGATTTGTTTTTTATTTTTTATTTTTTATTTTTATTGTTTTTCTCCCCTTTGGGTATCCAACAACTATCCATTGCTTTGCTGAAATTAGTGGAGGAGTTTCGACACATTGGTTGGTTCCTCCTTCCTCCAAAGAAAAAACTAGAGTGAATCTCAAAACATGTCAATTGTCTTCTCTGCTGCTGCAACCCTTTCCCCTCGGTCTCGGTTATTATTCCCTCCACTTAGTTTTTCTCACACTTACCCTACGAAATTTCATCGAAATGGGTGGCATCCAAGTCTCTCCAAATCGAGGACGCAGCCCCTTATTACAAACTCTTTGCTTTCTGATAAGTTTCCAACGGTGGGTTCGCTGTCAACGGGACCCATTCCATCCACTCACCTCATTGAAGTGGTTAAAACTGCTGCACAGACTGGTGCTCAGGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTTTGAAGATCATCTTATTCTTGGGGAAGAAGGAGGAGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTGGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAGGTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATCAGGTGGAACGATCTCTTCTAGTGACAGGCTTTGGGTATGATCATGATGATGCATGGGCTACGAACATAGACTTATTCAAAGAATTTACGGATGTCAGCAGGGGTGTAAGACGACTTGGCGCAGCTGCCGTGGACATGTGTCATGTTGCATTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATATGGCTGCTGGTGTTTTGGTATGCTTTGAGTTTTATATCATTGATAATGATTCTGACTAGTAAGCCTTGAATCTTTGAGACTAAAGTAATTTTTCCTGAAGAGATTATTTGTCTAATGATTATGACAAGCAATCAAATGCTGGAT
>Glyma06g25880.1 sequence type=CDS gene model=Glyma06g25880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATTGTCTTCTCTGCTGCTGCAACCCTTTCCCCTCGGTCTCGGTTATTATTCCCTCCACTTAGTTTTTCTCACACTTACCCTACGAAATTTCATCGAAATGGGTGGCATCCAAGTCTCTCCAAATCGAGGACGCAGCCCCTTATTACAAACTCTTTGCTTTCTGATAAGTTTCCAACGGTGGGTTCGCTGTCAACGGGACCCATTCCATCCACTCACCTCATTGAAGTGGTTAAAACTGCTGCACAGACTGGTGCTCAGGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTTTGAAGATCATCTTATTCTTGGGGAAGAAGGAGGAGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTGGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAGGTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATCAGGTGGAACGATCTCTTCTAGTGACAGGCTTTGGGTATGATCATGATGATGCATGGGCTACGAACATAGACTTATTCAAAGAATTTACGGATGTCAGCAGGGGTGTAAGACGACTTGGCGCAGCTGCCGTGGACATGTGTCATGTTGCATTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATATGGCTGCTGGTGTTTTGATGGTTGAGGAAGCTGGTGGCACAGTTTCTCGGATGGATGGAGGAAAGTTTTGTGTTTTTGATAGATCTGTTTTGGTTTCAAATGGTCAGCTCCATGCAAAGCTTCTGGAGAGAATTGGACCTGCAACAGAGAAACTAAAAAACAAGGGAATTGATTTCTCATTGTGGTATAAACCGGAGAACTACAGGGCTGACGTTTAA >Glyma06g25880.2 sequence type=CDS gene model=Glyma06g25880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCAATTGTCTTCTCTGCTGCTGCAACCCTTTCCCCTCGGTCTCGGTTATTATTCCCTCCACTTAGTTTTTCTCACACTTACCCTACGAAATTTCATCGAAATGGGTGGCATCCAAGTCTCTCCAAATCGAGGACGCAGCCCCTTATTACAAACTCTTTGCTTTCTGATAAGTTTCCAACGGTGGGTTCGCTGTCAACGGGACCCATTCCATCCACTCACCTCATTGAAGTGGTTAAAACTGCTGCACAGACTGGTGCTCAGGTTGTGATGGAAGCTGTTAATAAGCCTCGGAATATTACATATAAAGGATTAACTGACTTAGTGACTGAGACAGATAAAATGAGTGAAGCTGCCATATTAGAAGTGGTGAAAAAGAATTTTGAAGATCATCTTATTCTTGGGGAAGAAGGAGGAGTTATAGGAGATGCAGCATCTGATTATCTCTGGTGCATTGATCCTCTAGATGGAACAACAAACTTTGCTCATGGTTATCCCAGCTTTGCTGTTTCTGTTGGAGTTCTATATCGAGGGAATCCTGCAGCTGCTGCAGTGGTTGAGTTTGTTGGAGGTTCAATGTGTTGGAATACCCGCCTTTTCTCTGCAACTGCAGGTGGTGGGGCATTCTGCAATGGCCAAAGGATCCAAGTGAGTGCAACTAATCAGGTGGAACGATCTCTTCTAGTGACAGGCTTTGGGTATGATCATGATGATGCATGGGCTACGAACATAGACTTATTCAAAGAATTTACGGATGTCAGCAGGGGTGTAAGACGACTTGGCGCAGCTGCCGTGGACATGTGTCATGTTGCATTGGGAATTGTAGAAGCTTATTGGGAATATCGTCTAAAGCCATGGGATATGGCTGCTGGTGTTTTGGTATGCTTTGAGTTTTATATCATTGATAATGATTCTGACTAG
>Glyma06g25880.1 sequence type=predicted peptide gene model=Glyma06g25880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIVFSAAATLSPRSRLLFPPLSFSHTYPTKFHRNGWHPSLSKSRTQPLITNSLLSDKFPTVGSLSTGPIPSTHLIEVVKTAAQTGAQVVMEAVNKPRNITYKGLTDLVTETDKMSEAAILEVVKKNFEDHLILGEEGGVIGDAASDYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGNPAAAAVVEFVGGSMCWNTRLFSATAGGGAFCNGQRIQVSATNQVERSLLVTGFGYDHDDAWATNIDLFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLMVEEAGGTVSRMDGGKFCVFDRSVLVSNGQLHAKLLERIGPATEKLKNKGIDFSLWYKPENYRADV* >Glyma06g25880.2 sequence type=predicted peptide gene model=Glyma06g25880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSIVFSAAATLSPRSRLLFPPLSFSHTYPTKFHRNGWHPSLSKSRTQPLITNSLLSDKFPTVGSLSTGPIPSTHLIEVVKTAAQTGAQVVMEAVNKPRNITYKGLTDLVTETDKMSEAAILEVVKKNFEDHLILGEEGGVIGDAASDYLWCIDPLDGTTNFAHGYPSFAVSVGVLYRGNPAAAAVVEFVGGSMCWNTRLFSATAGGGAFCNGQRIQVSATNQVERSLLVTGFGYDHDDAWATNIDLFKEFTDVSRGVRRLGAAAVDMCHVALGIVEAYWEYRLKPWDMAAGVLVCFEFYIIDNDSD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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