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Report for Sequence Feature Glyma06g25570

Feature Type:gene_model
Chromosome:Gm06
Start:23416982
stop:23426915
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g25570
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G25770AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr4:13117821-13119982 REVERSE LENGTH=418 SoyBaseE_val: 7.00E-177ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
KOG4372 KOG Predicted alpha/beta hydrolase JGI ISS
PTHR12482Panther UNCHARACTERIZED JGI ISS
PF05057PFAM Putative serine esterase (DUF676) JGI ISS
UniRef100_G7JD33UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine esterase family protein n=1 Tax=Medicago truncatula RepID=G7JD33_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339CDDUniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339CDD related cluster n=1 Tax=unknown RepID=UPI0002339CDD SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g25570
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g25570 not represented in the dataset
Glyma06g25570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g25570 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g218100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g25570
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g25570
>Glyma06g25570.1   sequence type=CDS   gene model=Glyma06g25570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGCCTCAGACTCCGGCTCTGTGCTCCGACCCAAACTCCCCATACCCACTATTGACCCGACCCGCTCACTGCTCCGCCGCTGCTGCTGCTTCTTCGATCCAGGATCCAGACCCGCTCGGCCCACTCTCTCCCTCAAAATGGAACTGCTCCGCCGAATGGGCCGCGGCTGCTTCAAGGCCGAGGCCGATTCCGCCGGTCAGGACTTCTTCGACGCTGCCGCCGCCGCCGCGCCCAACCCGGCTCCTCACCACCTTGTTATAATGGTTAACGGAATCATTGGGAGTGCTGCTGATTGGAGATATGCTGCAGAGCAGTTTGTGAAGAAGCTTCCAGATAAAGTGATTGTACACCGCAGTGAATGCAATTCTTCAAAATTGACGTTTGATGGTGTTGATACAATGGGAGAGAGGCTAGCTGAAGAGGTATTATCTGTTGTTAGACGTTGGCCAGAGGTGCAGAAGATATCCTTTGTGGCGCATTCTCTAGGAGGCTTGGTGGCAAGATATGCTATTGGGAGACTTTATAATTATTCTTCAACATTTGCACTTGTTGGTACCAGTAGAGACTATTTCAGTGAAGAGAAAACAGAATTTTCAAAGCAATTCCTTGAACAGAGTTATGAAGGCAAAATTGCTGGTTTAGAGCCCATGAACTTCATAACATTTGCAACACCACATCTTGGTTCAAGAGGAAATAAACAGCTTCCATTTCTTTGCGGTCTTCCTTTCCTTGAGAGAAGAGCATCTGAAACGGCACATTTAGTTGCAGGGAGATCTGGGAAGCATCTCTTCCTCATGGACAATGATGATGGAAAGCGTCCTCTGCTCGTGCGAATGGTTAATGACTCTGATGATTTAAAGTTTATGTCAGCTTTACGTGCATTTAAGCGTCGAGTGGCATATGCAAATGCAAATTATGATCATATGGTAGGATGGCGTACCTCATCAATTCGTCGCCAACATGAACTTCCAAAGTCCAATCTTCTTGTAATTGATGAGAGATACCCGCACATTGTTTATGTTGAAGGAGAGACTGCTGATGAAATTTGCAATAAAACATCTAATATTGGAGGCCAAATAATTGACTTAGAAGAGGAGATGATAAGGGGGCTCACTCAGGTATCTTGGGAGCGTGTGGATGTTAGCTTTCAGAAAAGTAAACAGCGCTACATTGCTCACAGTACAATTCAGGTGAAAACATATTGGTTGAATTCTGATGGTGCTGATGTGGTTTACCATATGATAGATAACTTCCTTCTTTAG
Predicted protein sequences of Glyma06g25570
>Glyma06g25570.1   sequence type=predicted peptide   gene model=Glyma06g25570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLASDSGSVLRPKLPIPTIDPTRSLLRRCCCFFDPGSRPARPTLSLKMELLRRMGRGCFKAEADSAGQDFFDAAAAAAPNPAPHHLVIMVNGIIGSAADWRYAAEQFVKKLPDKVIVHRSECNSSKLTFDGVDTMGERLAEEVLSVVRRWPEVQKISFVAHSLGGLVARYAIGRLYNYSSTFALVGTSRDYFSEEKTEFSKQFLEQSYEGKIAGLEPMNFITFATPHLGSRGNKQLPFLCGLPFLERRASETAHLVAGRSGKHLFLMDNDDGKRPLLVRMVNDSDDLKFMSALRAFKRRVAYANANYDHMVGWRTSSIRRQHELPKSNLLVIDERYPHIVYVEGETADEICNKTSNIGGQIIDLEEEMIRGLTQVSWERVDVSFQKSKQRYIAHSTIQVKTYWLNSDGADVVYHMIDNFLL*






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