Glyma06g25030 - SoyBase

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Report for Sequence Feature Glyma06g25030

Feature Type:	gene_model
Chromosome:	Gm06
Start:	22703441
stop:	22733121
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g25030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G24120	AT	Annotation by Michelle Graham. TAIR10: DNA/RNA polymerases superfamily protein \| chr2:10249358-10254530 REVERSE LENGTH=993	SoyBase	E_val: 0	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG1038	KOG	Mitochondrial/chloroplast DNA-directed RNA polymerase RPO41, provides primers for DNA replication-initiation	JGI		ISS
PTHR10102	Panther	T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE	JGI		ISS
PF00940	PFAM	DNA-dependent RNA polymerase	JGI		ISS
UniRef100_I1MT00	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase n=1 Tax=Glycine max RepID=I1MT00_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EDA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EDA4 related cluster n=1 Tax=unknown RepID=UPI000233EDA4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g25030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g25030 not represented in the dataset	Glyma06g25030 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g25030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g217400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g25030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g25030

Limit To All Plant Sequences

>Glyma06g25030.1   sequence type=CDS   gene model=Glyma06g25030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATTGGCATCTTCATTCCCCACTCCACAGGTTCACGCCTTCGACAATCCCGCCAGACGAAGAAGAAGAAGCCACTTTCACATTATTAACCGCAACAAGCCCCACCGAACCCTCCACTTTCTCTTAATCCCAACCTCTCCCTCTCCCTCCTCTTCGCTCCTCTTCTCTTGCTCCTCCTTCCCCCTCACCCACTCCGACCCAATCCTCCAGTTCCGCCACCACCACCTCCTCTCCACCGACGGCAACTTCATCGTTGAAGACCTAAGCGCTGCGGTCGAGGAGGACGTGTCTCCGGCTACGACGGCAAGGATCTTTGTCCAGGAGCCGCCGTGGCTGTTCCTGAAGGGTTTGTTAATGCAGGAGGAGGAGATGAGACAGAAGGACAAGGAGAGGGAGAAGTACAATTTGCTGCGAAGGAGGCAGATTGAGGCGGAGACAGAGGCCTGGGAGAAGATGGTGGAGGAGTACAGGGAATTGGAGAGGGAAATGCGGGAGAAGATGTTGGCGCCCAATTTGCCGCATGTCAAGTCGCTCCTCTTGGGCTGGTTCGAGCCGTTCAGGGCCGCCGTGGAGGCCGAGCAGACGGCCCACCGCGCCCGCCCCAAGAAGCAGCAGGACTCCATTGCCCCCCACGTCGACGACTTGCCTGCCGATAAGGTGGCCGTCATTGTGATGCATAAGATGATGGCCATGGTGATGGAGAATGAGGAAGGCTGTGTTCAGCTTGTTCATGCTGCTGTTCATATTGGCATGGCTCTAGAACAGGAGGTTAGGATTCATAAGTTCGTTGAAGGAAATAAAAGTAGCCAGAGTAAGAAGACAGAGGGTGATGCTGAAGACAGTTTGGATAGTGATAAAGAAAAACAAAGAAATTATTTAAACAGTTTGCTTAAAAAAAATAGACTGAGGGAAGTGCAGATGATTTTGAGAAAAGAAGAATGTAGTCCTTGGAGCCGGGACACGCAGGCTAAGCTGGGAAGTCGATTAGTAGAATTATTAATTGATACAGCATATGTACACTCTCCGGTTAACCAGTCTGCCGATACTCCACCTGATATTCGACCAGCTTTCAGGCATGGTTTTAAGGCTGTACCATGGCATCCAGGGCAAAAGTTTTCGAAGAAGTATGGCATTATACAATGTGATCCCTTGGTCCTAGTTGGGCTTGAAAAATGTGCTAAACATATGTTAATACCTTACATGCCAATGTTAATACCTCCCAAAAAATGGAAAGGATATGACAAGGGTGGACACTTATTCTTACCATCTTATATCATGCGTACTCATGGATCTAAGAAGCAGCAAGATGTAATGAAGAATGTCGACGGAGCACAAATGCAAAAAGTTTTTGAGGCCTTGGATATTCTTGGCAACACCAAATGGCGAGTAAATAGAAGAGTGCTTGGAGTTGTAGAGTCAATTTGGGCTGGAGGAGGTAACATTGCAGGACTGGTTGATTGTAAAGATGTTCCTAAGCCAGATAAGCCGCTTGTAGAGGATTTAAAACTAATTCAGGAGTGGAAATGCAATGTAAGGAAGGCAAAAAAAATTAATCTGGAAAGGCATTCTCTAAGATGTGACACTGAACTTAAGCTTTCTGTGGCACGAAAAATGAAAGATGAGGAAGGCTTTTATTATCCACACAATCTTGACTTCCGTGGCAGAGCATATCCTATGCATCCTCATTTGAATCATTTAGGTTCTGATCTGTGTCGAGGACTACTTGAATTTGCTGAAGGGCGGCCATTGGGAAAGTCTGGACTAAGGTGGCTGAAGATACATCTAGCAAATTTGTATGCTGGTGGTATTGAGAAGCAGTCTTATGATGGGCGCCTAGGATTTATAGAGGATCATATTCATGATATATTTGATTCTGCTGATCACCCTATTAACGGAAATCGTTGGTGGTTAACAGCGGAGGATCCTTTCCAGTGCCTTGCTGCTTGTATTAATCTATCAGAGGCCTTAAGAAGCTCATCACCAAATTCTTTTATCTCACATCTTCCAATTCATCAGGATGGTTCCTGCAATGGCTTACAACACTATGCAGCTCTGGGAAGAGATGATCTGGAGGCTGCTGCAGTTAACTTGGTTGCTAAAGAGAAACCTGCTGATGTTTACACAGAGATTGCTGTTAGGGTTTATGATATAATGAGACAAGACAGCAACAAAGACCCGGATACCTTTCCAAATGCTTTGTTAGCAAAGGTGTTGATTGATCAGATTGATAGGAAACTGGTCAAACAGACAGTAATGACTTCTGTTTATGGTGTTACTTATATTGGGGCACGGGAGCAAATTAAGAGAAGATTAGGGGAGAAAGGTTTCGTCACTGATGATAGACTTTTATATGCTGCATCTTGCTATGCAGCTAAGGTGACATTGGCTGCCCTTGGAGAAGTTTTTGAAGCTGCACGTGGCATTATGGGTTGGCTTGGAGATTGTGCAAAGGTGATTGCTTGTGAAAACCAGGCTGTTTGCTGGACCACTCCTCTTGGTCTTCCTGTTGTACAACCATACTGTAAAACTGAACGTTATCAGATAAGAACATCTCTTCAGCTTTTGGCTTTGCAGAGGGAGGGAAGTGCAGTATCTGTCAAGAAGCAGAGAAGTGCATTTCCTCCTAACTTTGTACATTCATTGGATAGTTCACACATGATGATGACTGCTCTAGCCTGCAATGATGCTGGATTATGTTTTGCAGGGGTTCATGATTCGTTTTGGACACACCCATGCGATGTTGAGAAAATGAATCAGATTCTAAGAGAAAAATTTGTGGAGCTTTATAACATGCCTATACTTGAAAATTTGCTTGAGGGCTTCCAGACTACATATCCAGGGTTGGCTTTCCCTCCATTGCCAAAGAGAGGTGATTTTGACTTACAGAAGGTTCTTGATTCTCCATACTTCTTCAACTGA

Predicted protein sequences of Glyma06g25030

Limit To All Plant Sequences

>Glyma06g25030.1   sequence type=predicted peptide   gene model=Glyma06g25030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLASSFPTPQVHAFDNPARRRRRSHFHIINRNKPHRTLHFLLIPTSPSPSSSLLFSCSSFPLTHSDPILQFRHHHLLSTDGNFIVEDLSAAVEEDVSPATTARIFVQEPPWLFLKGLLMQEEEMRQKDKEREKYNLLRRRQIEAETEAWEKMVEEYRELEREMREKMLAPNLPHVKSLLLGWFEPFRAAVEAEQTAHRARPKKQQDSIAPHVDDLPADKVAVIVMHKMMAMVMENEEGCVQLVHAAVHIGMALEQEVRIHKFVEGNKSSQSKKTEGDAEDSLDSDKEKQRNYLNSLLKKNRLREVQMILRKEECSPWSRDTQAKLGSRLVELLIDTAYVHSPVNQSADTPPDIRPAFRHGFKAVPWHPGQKFSKKYGIIQCDPLVLVGLEKCAKHMLIPYMPMLIPPKKWKGYDKGGHLFLPSYIMRTHGSKKQQDVMKNVDGAQMQKVFEALDILGNTKWRVNRRVLGVVESIWAGGGNIAGLVDCKDVPKPDKPLVEDLKLIQEWKCNVRKAKKINLERHSLRCDTELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGLLEFAEGRPLGKSGLRWLKIHLANLYAGGIEKQSYDGRLGFIEDHIHDIFDSADHPINGNRWWLTAEDPFQCLAACINLSEALRSSSPNSFISHLPIHQDGSCNGLQHYAALGRDDLEAAAVNLVAKEKPADVYTEIAVRVYDIMRQDSNKDPDTFPNALLAKVLIDQIDRKLVKQTVMTSVYGVTYIGAREQIKRRLGEKGFVTDDRLLYAASCYAAKVTLAALGEVFEAARGIMGWLGDCAKVIACENQAVCWTTPLGLPVVQPYCKTERYQIRTSLQLLALQREGSAVSVKKQRSAFPPNFVHSLDSSHMMMTALACNDAGLCFAGVHDSFWTHPCDVEKMNQILREKFVELYNMPILENLLEGFQTTYPGLAFPPLPKRGDFDLQKVLDSPYFFN*

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