Glyma06g24870 - SoyBase

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Report for Sequence Feature Glyma06g24870

Feature Type:	gene_model
Chromosome:	Gm06
Start:	22668324
stop:	22681163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g24870

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08750	AT	Annotation by Michelle Graham. TAIR10: Peptidase C13 family \| chr1:2801283-2804392 FORWARD LENGTH=388	SoyBase	E_val: 0	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0016126	GO-bp	Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process	SoyBase	N/A	ISS
GO:0046520	GO-bp	Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process	SoyBase	N/A	ISS
GO:0005783	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum	SoyBase	N/A	ISS
GO:0003923	GO-mf	Annotation by Michelle Graham. GO Molecular Function: GPI-anchor transamidase activity	SoyBase	N/A	ISS
GO:0004197	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity	SoyBase	N/A	ISS
KOG1349	KOG	Gpi-anchor transamidase	JGI		ISS
PTHR12000	Panther	HEMOGLOBINASE FAMILY MEMBER	JGI		ISS
PTHR12000:SF1	Panther	GPI-ANCHOR TRANSAMIDASE	JGI		ISS
PF01650	PFAM	Peptidase C13 family	JGI		ISS
UniRef100_I1KDB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDB7_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q8GYI6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Peptidase C13-like protein n=2 Tax=Arabidopsis thaliana RepID=Q8GYI6_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g24870

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g24870 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g217200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g24870

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g24870

Limit To All Plant Sequences

>Glyma06g24870.2   sequence type=transcript   gene model=Glyma06g24870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTACTTTTTGTTTATGGTTTTGTTGTAGAAGTAGAACTGAGACTCCTTTGGAAATGTATTGCATCCTAGTGATCCTACAATAGAAAAATTGTTTAATTACCGGCATATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAATTTTTTAGCAGTGCCGAGACATTTCTTGATTTCTTTGATGCTGCTATGTGCCACTTTTGCTTGAAATGCAATTTCACCCAAAAAAGAAGATTATTGGCTGCATAATATGGGGGGCAAACTACTGAGAGAGCAGCTTCATAGTTGTTGCCTATCAGCTGTATTATTCTGTTAGCCATTGTTTTTTGCCATGGTGCAGTTCATTCTGGTAGCCATTGGTATTTGCCTGCTGCTGCTGTCATGTTTCGCTTTGTATTTTGATGATTATGATTATGGTGGTTGTAAACTGTATGATTTTTGTAAAACCGTTCTCTCTTTTGTTTAGATATTACGTTGATGTCCAACATTGGAACATTGCTCTTTTAAGAACTCGGAAATGAATATGTTTGATCATTTTATCTATTTGTACAATAAATGCTATATTTTTCACCCTTGTAAAACATATTTATTTAAGATGAATTAAAAATGGAGTGTAGC

Coding sequences of Glyma06g24870

Limit To All Plant Sequences

>Glyma06g24870.1   sequence type=CDS   gene model=Glyma06g24870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTAGGTGTGATTAAGAAAGTAGCGGTAATGATACTACTGATAATGTTTCTCAGCTACCCTGTAGCATACTCCTCATCTTCGTCTGAGACTACGATGCACACTAATAATTGGGCTGTTTTGGTCTGCACATCTCGCTTCTGGTTTAATTACCGGCATATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAA

>Glyma06g24870.2   sequence type=CDS   gene model=Glyma06g24870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAA

Predicted protein sequences of Glyma06g24870

Limit To All Plant Sequences

>Glyma06g24870.1   sequence type=predicted peptide   gene model=Glyma06g24870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGLGVIKKVAVMILLIMFLSYPVAYSSSSSETTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLIMVDTCQASTLFSQLHSPGVLAIGSSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSLFNSYNPNLLMSTAYYRMDLYQCHLEEVPVTNFFGSVMKTIHTDSAYRSRSNKKIGAAKTKMSPDESISDSDSDEEDQFNNLTAEKYLQYSVGQLWSVILSNANTFESIDSLVCYGLLLMLPLLIFSTWLSKYDWGNIP*

>Glyma06g24870.2   sequence type=predicted peptide   gene model=Glyma06g24870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLIMVDTCQASTLFSQLHSPGVLAIGSSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSLFNSYNPNLLMSTAYYRMDLYQCHLEEVPVTNFFGSVMKTIHTDSAYRSRSNKKIGAAKTKMSPDESISDSDSDEEDQFNNLTAEKYLQYSVGQLWSVILSNANTFESIDSLVCYGLLLMLPLLIFSTWLSKYDWGNIP*

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