Report for Sequence Feature Glyma06g24870
Feature Type: gene_model
Chromosome: Gm06
Start: 22668324
stop: 22681163
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g24870
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G08750 AT
Annotation by Michelle Graham. TAIR10: Peptidase C13 family | chr1:2801283-2804392 FORWARD LENGTH=388
SoyBase E_val: 0 ISS
GO:0006508 GO-bp
Annotation by Michelle Graham. GO Biological Process: proteolysis
SoyBase N/A ISS
GO:0016126 GO-bp
Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process
SoyBase N/A ISS
GO:0046520 GO-bp
Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process
SoyBase N/A ISS
GO:0005783 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum
SoyBase N/A ISS
GO:0003923 GO-mf
Annotation by Michelle Graham. GO Molecular Function: GPI-anchor transamidase activity
SoyBase N/A ISS
GO:0004197 GO-mf
Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity
SoyBase N/A ISS
KOG1349
KOG
Gpi-anchor transamidase
JGI ISS
PTHR12000 Panther
HEMOGLOBINASE FAMILY MEMBER
JGI ISS
PTHR12000:SF1 Panther
GPI-ANCHOR TRANSAMIDASE
JGI ISS
PF01650 PFAM
Peptidase C13 family
JGI ISS
UniRef100_I1KDB7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDB7_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q8GYI6 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptidase C13-like protein n=2 Tax=Arabidopsis thaliana RepID=Q8GYI6_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g24870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Gene model name correspondences to Glyma06g24870 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g217200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g24870
Transcripts of Glyma06g24870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g24870.2 sequence type=transcript gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TTTACTTTTTGTTTATGGTTTTGTTGTAGAAGTAGAACTGAGACTCCTTTGGAAATGTATTGCATCCTAGTGATCCTACAATAGAAAAATTGTTTAATTACCGGCATATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAATTTTTTAGCAGTGCCGAGACATTTCTTGATTTCTTTGATGCTGCTATGTGCCACTTTTGCTTGAAATGCAATTTCACCCAAAAAAGAAGATTATTGGCTGCATAATATGGGGGGCAAACTACTGAGAGAGCAGCTTCATAGTTGTTGCCTATCAGCTGTATTATTCTGTTAGCCATTGTTTTTTGCCATGGTGCAGTTCATTCTGGTAGCCATTGGTATTTGCCTGCTGCTGCTGTCATGTTTCGCTTTGTATTTTGATGATTATGATTATGGTGGTTGTAAACTGTATGATTTTTGTAAAACCGTTCTCTCTTTTGTTTAGATATTACGTTGATGTCCAACATTGGAACATTGCTCTTTTAAGAACTCGGAAATGAATATGTTTGATCATTTTATCTATTTGTACAATAAATGCTATATTTTTCACCCTTGTAAAACATATTTATTTAAGATGAATTAAAAATGGAGTGTAGC
Coding sequences of Glyma06g24870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g24870.1 sequence type=CDS gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGATTAGGTGTGATTAAGAAAGTAGCGGTAATGATACTACTGATAATGTTTCTCAGCTACCCTGTAGCATACTCCTCATCTTCGTCTGAGACTACGATGCACACTAATAATTGGGCTGTTTTGGTCTGCACATCTCGCTTCTGGTTTAATTACCGGCATATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAA
>Glyma06g24870.2 sequence type=CDS gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAA
Predicted protein sequences of Glyma06g24870
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g24870.1 sequence type=predicted peptide gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGLGVIKKVAVMILLIMFLSYPVAYSSSSSETTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLIMVDTCQASTLFSQLHSPGVLAIGSSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSLFNSYNPNLLMSTAYYRMDLYQCHLEEVPVTNFFGSVMKTIHTDSAYRSRSNKKIGAAKTKMSPDESISDSDSDEEDQFNNLTAEKYLQYSVGQLWSVILSNANTFESIDSLVCYGLLLMLPLLIFSTWLSKYDWGNIP*
>Glyma06g24870.2 sequence type=predicted peptide gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLIMVDTCQASTLFSQLHSPGVLAIGSSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSLFNSYNPNLLMSTAYYRMDLYQCHLEEVPVTNFFGSVMKTIHTDSAYRSRSNKKIGAAKTKMSPDESISDSDSDEEDQFNNLTAEKYLQYSVGQLWSVILSNANTFESIDSLVCYGLLLMLPLLIFSTWLSKYDWGNIP*