SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G08750 | AT | Annotation by Michelle Graham. TAIR10: Peptidase C13 family | chr1:2801283-2804392 FORWARD LENGTH=388 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0046520 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sphingoid biosynthetic process | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0003923 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: GPI-anchor transamidase activity | SoyBase | N/A | ISS |
| GO:0004197 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase activity | SoyBase | N/A | ISS |
| KOG1349 | KOG | Gpi-anchor transamidase | JGI | ISS | |
| PTHR12000 | Panther | HEMOGLOBINASE FAMILY MEMBER | JGI | ISS | |
| PTHR12000:SF1 | Panther | GPI-ANCHOR TRANSAMIDASE | JGI | ISS | |
| PF01650 | PFAM | Peptidase C13 family | JGI | ISS | |
| UniRef100_I1KDB7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDB7_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q8GYI6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Peptidase C13-like protein n=2 Tax=Arabidopsis thaliana RepID=Q8GYI6_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma06g24870 not represented in the dataset |
Glyma06g24870 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g217200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g24870.2 sequence type=transcript gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTACTTTTTGTTTATGGTTTTGTTGTAGAAGTAGAACTGAGACTCCTTTGGAAATGTATTGCATCCTAGTGATCCTACAATAGAAAAATTGTTTAATTACCGGCATATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAATTTTTTAGCAGTGCCGAGACATTTCTTGATTTCTTTGATGCTGCTATGTGCCACTTTTGCTTGAAATGCAATTTCACCCAAAAAAGAAGATTATTGGCTGCATAATATGGGGGGCAAACTACTGAGAGAGCAGCTTCATAGTTGTTGCCTATCAGCTGTATTATTCTGTTAGCCATTGTTTTTTGCCATGGTGCAGTTCATTCTGGTAGCCATTGGTATTTGCCTGCTGCTGCTGTCATGTTTCGCTTTGTATTTTGATGATTATGATTATGGTGGTTGTAAACTGTATGATTTTTGTAAAACCGTTCTCTCTTTTGTTTAGATATTACGTTGATGTCCAACATTGGAACATTGCTCTTTTAAGAACTCGGAAATGAATATGTTTGATCATTTTATCTATTTGTACAATAAATGCTATATTTTTCACCCTTGTAAAACATATTTATTTAAGATGAATTAAAAATGGAGTGTAGC
>Glyma06g24870.1 sequence type=CDS gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGATTAGGTGTGATTAAGAAAGTAGCGGTAATGATACTACTGATAATGTTTCTCAGCTACCCTGTAGCATACTCCTCATCTTCGTCTGAGACTACGATGCACACTAATAATTGGGCTGTTTTGGTCTGCACATCTCGCTTCTGGTTTAATTACCGGCATATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAA >Glyma06g24870.2 sequence type=CDS gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCAATACCCTGTCATTGTATAGGACAGTTAAGCGGCTAGGAATACCGGATGAGAGGATTATACTCATGCTTGCAGATGACATGGCATGTAATGCTAGAAACAAGTACCCTGCCCAAGTTTTTAATAATGAAAACCATAGACTTAATCTGTATGGGGATAATGTGGAGGTAGACTATCGTGGCTATGAAGTGACAGTGGAAAATTTTTTACGGGTACTTACCGGACGTCATGAGACATCTGTTCCAAGGTCCAAGCGACTTCTTAGTGATGAAGGAAGTCATATTCTTCTGTATATGACAGGGCATGGAGGTGATGAGTTTTTGAAGTTTCAGGATTCGGAAGAGCTTCAAAGTCATGATTTAGCTGATGCTGTGAAGCAAATGAAAGAAAAGCGCAGGTTTAAGGAGCTTCTGATAATGGTGGACACCTGCCAAGCCTCTACTCTGTTCTCCCAGCTTCATTCACCAGGTGTTTTGGCAATTGGAAGTAGTAAGAAAGGAGAAAATTCATATTCACATCATTTGGACTCAGATGTTGGCGTTTCAGTTGTTGATCGTTTTACATTTTACACTCTTGCTTTCTTTGAGAGGCTGAATATGTATGACAATGCTTCATTGAGCAGCCTTTTCAATTCATATAATCCAAATTTGTTGATGTCAACCGCATATTACAGAATGGATCTATACCAATGCCATTTAGAGGAGGTACCTGTGACAAACTTCTTTGGTTCTGTAATGAAGACGATACATACTGATTCAGCCTACAGATCCCGGTCAAATAAAAAAATCGGGGCAGCAAAAACCAAAATGTCTCCGGATGAATCAATATCTGACAGTGACTCAGATGAGGAGGATCAGTTTAATAATTTAACTGCTGAGAAATATCTCCAGTATAGTGTTGGACAACTATGGAGTGTTATTCTCAGCAATGCGAATACTTTTGAAAGCATCGATAGTTTGGTGTGCTATGGACTGCTTTTAATGCTTCCTTTGTTGATATTTTCCACATGGCTATCAAAGTATGATTGGGGAAACATTCCATAA
>Glyma06g24870.1 sequence type=predicted peptide gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGLGVIKKVAVMILLIMFLSYPVAYSSSSSETTMHTNNWAVLVCTSRFWFNYRHMANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLIMVDTCQASTLFSQLHSPGVLAIGSSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSLFNSYNPNLLMSTAYYRMDLYQCHLEEVPVTNFFGSVMKTIHTDSAYRSRSNKKIGAAKTKMSPDESISDSDSDEEDQFNNLTAEKYLQYSVGQLWSVILSNANTFESIDSLVCYGLLLMLPLLIFSTWLSKYDWGNIP* >Glyma06g24870.2 sequence type=predicted peptide gene model=Glyma06g24870 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MANTLSLYRTVKRLGIPDERIILMLADDMACNARNKYPAQVFNNENHRLNLYGDNVEVDYRGYEVTVENFLRVLTGRHETSVPRSKRLLSDEGSHILLYMTGHGGDEFLKFQDSEELQSHDLADAVKQMKEKRRFKELLIMVDTCQASTLFSQLHSPGVLAIGSSKKGENSYSHHLDSDVGVSVVDRFTFYTLAFFERLNMYDNASLSSLFNSYNPNLLMSTAYYRMDLYQCHLEEVPVTNFFGSVMKTIHTDSAYRSRSNKKIGAAKTKMSPDESISDSDSDEEDQFNNLTAEKYLQYSVGQLWSVILSNANTFESIDSLVCYGLLLMLPLLIFSTWLSKYDWGNIP*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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