SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26830 | AT | Annotation by Michelle Graham. TAIR10: Protein kinase superfamily protein | chr2:11443599-11446958 FORWARD LENGTH=374 | SoyBase | E_val: 3.00E-172 | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0016301 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: kinase activity | SoyBase | N/A | ISS |
| GO:0016772 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups | SoyBase | N/A | ISS |
| GO:0016773 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphotransferase activity, alcohol group as acceptor | SoyBase | N/A | ISS |
| KOG4720 | KOG | Ethanolamine kinase | JGI | ISS | |
| PTHR22603 | Panther | CHOLINE/ETHANOALAMINE KINASE RELATED | JGI | ISS | |
| PTHR22603:SF16 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF01633 | PFAM | Choline/ethanolamine kinase | JGI | ISS | |
| UniRef100_B6TL87 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Choline/ethanolamine kinase n=1 Tax=Zea mays RepID=B6TL87_MAIZE | SoyBase | E_val: 7.00E-175 | ISS |
| UniRef100_I1KDB3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDB3_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g24820 not represented in the dataset |
Glyma06g24820 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g216800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g24820.4 sequence type=transcript gene model=Glyma06g24820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TCACAATGACCAATTGGGACCGGGGCAGCATTGTAAACGCAACACTACGTGGCCTATGCGTGTTGCCCATATCGGTCATTTCGTGGGACAACAAAAAGTCGACTCAGGAGGAGGAGGAGGAGGAGACAGAGACACCGCTCGCTCGATTTGAAAGTACCCAACACACCACACAAACAAACCCACATCCCCCCTTTTTTTTCTTCATATCATTTCACACACCTCCTTGTTCTTCTTGTTGTTTTTTTTCTTCCCTCTCTTCTCTTTGTTTTTCTTCTCCTTCGGTTGAATCAATGGGTGCAGAGGTTAAGATCTGGAATCCCGTTGAAGTCGCTGAGCAAGCTCGCCATGACTACGCTTCGCAGATTCATCCCTCACATCTCACCATTGATCCCTCCCTCGAGCTTCCTCAAATGACACCTCTCGTCCTAAAGTTGTGCAAGGATATGTTCAAGGCGTGGTCGAATTTGGATGATTCTTGCTTTGTTGTTGAGAAAATTTCCGGGGGCATAACAAATTTGTTACTCAAGGTTTCAGTTAAACAAGAAAACTGCATTGAGGAAACTATAACTGTCAGATTGTATGGACCCAACACTGAGTACATTATTGATCGGCAGAGGGAATTGCAGGCTACCAAATACATCACAGCTGCAGGATTTGGTGCTAAGTGGCTTGGCATATTTGGGAATGGCATGGTGCAATCTTTTATAAATGCACACACTCTATCTCCTTCAGATATGCGAGAGCCAAAGCTGGCTGCTAAAATAGCTAAGCAACTTCAAAGATTTCATCATGTGGAAATTCCAGGCTCAAAGGAACCTCAATTATGGAATGATGTCTGGAAGTTCTTTGAGAAAGCATCTGTTCTTGAATTTGATGATAGTAAAATGCAGAAGACTTATGAGACAATTTCATTCAAGGAAGTCCATGATGAAATTGTTGAGCTCAAGGGATTGTGTGATCTACTCAAATCTCCTGTAATTTTTGCTCACAATGACTTGCTTTCTGGAAATATAATGATGAATTGTGAAGAAGATAAACTTTACTTCATTGATTATGAATATGCATCGTACAACTACAGAGGCTATGATATAGGAGACCACTTTGCAGAATATGCTGGCTTTGAATGTGACTACGACTTGTACCCAAATATGAATGAACAATATCATTTCCTCAGGCATTACTTGAAACCTGAAAGACCCCAAGAGGTGTCTGAGAAAGATCTTGAAACTTTGTATGTTGAGGCAAATACATTTTCCCTTGCTTCTCACATTTTCTGGGCATTGTGGGGTCTAATTCAGGTAATATTTCCTCTTATATGGTCGCTATGCTTTCTTAATCAAATGACATCCTCAACTGTTGATATTGCTTCTAATGATAAATAGGCAAAGATGTCTGCAATTGAATTTGATTATCTTGGTTACTTTTTCCTTCGATACCACGAGTACAAAAGGCACAAAGAGAAGTATTTCTTGCTGGCACAGTCCTACCTTTCAGGATGCAAGAATGAGATGAGTAGATAGATAGATTATACTTATACTCAGTCATTCGTGGGATTTTTGTACGTCAAGTTTGTAGCATGAGTCCCCTGATTCATGTAGTTTAATGTTTGTGTAACATATCATTTTTAGACGCTTATCACAATAATGGCTAATTAGGCGTTTATGTTTGAGCTACAGGCTCTTCTACATTCTATGTTGTAATCCTAGTACATAGGCTATATAAATTGATATATCATTCTTTTTCTTGTATTGTTGTCATCATAAATTTTGGTCTGATACCAATAGTTTTTGTTATCCCTTTCCTTTATTGTTTATTCCCCGTCGATTTTGTACTAGGCGAAGGATGAGACTTGAGAAGCTGGGCATATGTCCTATAAATAGATTTAACTTGTATAAATCCTTTTGTGGTGATCGTTATTTATTCTGTGTCTTTGATCAGTAAACTTTTGCATATTTGTATTTCTGTGAGGATTTCGTATAGAAGAAAAGGGTAAACTTCCATTTGGTCA
>Glyma06g24820.3 sequence type=CDS gene model=Glyma06g24820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCAATTGGGACCGGGGCAGCATTGTAAACGCAACACTACGTGGCCTATGCGTGTTGCCCATATCGGTCATTTCGTGGGACAACAAAAAGTCGACTCAGGAGGAGGAGGAGGAGGAGACAGAGACACCGCTCGCTCGATTTGAAAGTACCCAACACACCACACAAACAAACCCACATCCCCCCTTTTTTTTCTTCATATCATTTCACACACCTCCTTGTTCTTCTTGTTGTTTTTTTTCTTCCCTCTCTTCTCTTTGTTTTTCTTCTCCTTCGGTTGAATCAATGGGTGCAGAGGTTAAGATCTGGAATCCCGTTGAAGTCGCTGAGCAAGCTCGCCATGACTACGCTTCGCAGATTCATCCCTCACATCTCACCATTGATCCCTCCCTCGAGCTTCCTCAAATGACACCTCTCGTCCTAAAGTTGTGCAAGGATATGTTCAAGGCGTGGTCGAATTTGGATGATTCTTGCTTTGTTGTTGAGAAAATTTCCGGGGGCATAACAAATTTGTTACTCAAGGTTTCAGTTAAACAAGAAAACTGCATTGAGGAAACTATAACTGTCAGATTGTATGGACCCAACACTGAGTACATTATTGATCGGCAGAGGGAATTGCAGGCTACCAAATACATCACAGCTGCAGGATTTGGTGCTAAGTGGCTTGGCATATTTGGGAATGGCATGGTGCAATCTTTTATAAATGCACACACTCTATCTCCTTCAGATATGCGAGAGCCAAAGCTGGCTGCTAAAATAGCTAAGCAACTTCAAAGATTTCATCATGTGGAAATTCCAGGCTCAAAGGAACCTCAATTATGGAATGATGTCTGGAAGTTCTTTGAGAAAGCATCTGTTCTTGAATTTGATGATAGTAAAATGCAGAAGACTTATGAGACAATTTCATTCAAGGAAGTCCATGATGAAATTGTTGAGCTCAAGGGATTGTGTGATCTACTCAAATCTCCTGTAATTTTTGCTCACAATGACTTGCTTTCTGGAAATATAATGATGAATTGTGAAGAAGATAAACTTTACTTCATTGATTATGAATATGCATCGTACAACTACAGAGGCTATGATATAGGAGACCACTTTGCAGAATATGCTGGCTTTGAATGTGACTACGACTTGTACCCAAATATGAATGAACAATATCATTTCCTCAGGCATTACTTGAAACCTGAAAGACCCCAAGAGGTGTCTGAGAAAGATCTTGAAACTTTGTATGTTGAGGCAAATACATTTTCCCTTGCTTCTCACATTTTCTGGGCATTGTGGGGTCTAATTCAGGCAAAGATGTCTGCAATTGAATTTGATTATCTTGGTTACTTTTTCCTTCGATACCACGAGTACAAAAGGCACAAAGAGAAGTATTTCTTGCTGGCACAGTCCTACCTTTCAGGATGCAAGAATGAGATGAGTAGATAG >Glyma06g24820.4 sequence type=CDS gene model=Glyma06g24820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACCAATTGGGACCGGGGCAGCATTGTAAACGCAACACTACGTGGCCTATGCGTGTTGCCCATATCGGTCATTTCGTGGGACAACAAAAAGTCGACTCAGGAGGAGGAGGAGGAGGAGACAGAGACACCGCTCGCTCGATTTGAAAGTACCCAACACACCACACAAACAAACCCACATCCCCCCTTTTTTTTCTTCATATCATTTCACACACCTCCTTGTTCTTCTTGTTGTTTTTTTTCTTCCCTCTCTTCTCTTTGTTTTTCTTCTCCTTCGGTTGAATCAATGGGTGCAGAGGTTAAGATCTGGAATCCCGTTGAAGTCGCTGAGCAAGCTCGCCATGACTACGCTTCGCAGATTCATCCCTCACATCTCACCATTGATCCCTCCCTCGAGCTTCCTCAAATGACACCTCTCGTCCTAAAGTTGTGCAAGGATATGTTCAAGGCGTGGTCGAATTTGGATGATTCTTGCTTTGTTGTTGAGAAAATTTCCGGGGGCATAACAAATTTGTTACTCAAGGTTTCAGTTAAACAAGAAAACTGCATTGAGGAAACTATAACTGTCAGATTGTATGGACCCAACACTGAGTACATTATTGATCGGCAGAGGGAATTGCAGGCTACCAAATACATCACAGCTGCAGGATTTGGTGCTAAGTGGCTTGGCATATTTGGGAATGGCATGGTGCAATCTTTTATAAATGCACACACTCTATCTCCTTCAGATATGCGAGAGCCAAAGCTGGCTGCTAAAATAGCTAAGCAACTTCAAAGATTTCATCATGTGGAAATTCCAGGCTCAAAGGAACCTCAATTATGGAATGATGTCTGGAAGTTCTTTGAGAAAGCATCTGTTCTTGAATTTGATGATAGTAAAATGCAGAAGACTTATGAGACAATTTCATTCAAGGAAGTCCATGATGAAATTGTTGAGCTCAAGGGATTGTGTGATCTACTCAAATCTCCTGTAATTTTTGCTCACAATGACTTGCTTTCTGGAAATATAATGATGAATTGTGAAGAAGATAAACTTTACTTCATTGATTATGAATATGCATCGTACAACTACAGAGGCTATGATATAGGAGACCACTTTGCAGAATATGCTGGCTTTGAATGTGACTACGACTTGTACCCAAATATGAATGAACAATATCATTTCCTCAGGCATTACTTGAAACCTGAAAGACCCCAAGAGGTGTCTGAGAAAGATCTTGAAACTTTGTATGTTGAGGCAAATACATTTTCCCTTGCTTCTCACATTTTCTGGGCATTGTGGGGTCTAATTCAGGTAATATTTCCTCTTATATGGTCGCTATGCTTTCTTAATCAAATGACATCCTCAACTGTTGATATTGCTTCTAATGATAAATAG
>Glyma06g24820.3 sequence type=predicted peptide gene model=Glyma06g24820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTNWDRGSIVNATLRGLCVLPISVISWDNKKSTQEEEEEETETPLARFESTQHTTQTNPHPPFFFFISFHTPPCSSCCFFSSLSSLCFSSPSVESMGAEVKIWNPVEVAEQARHDYASQIHPSHLTIDPSLELPQMTPLVLKLCKDMFKAWSNLDDSCFVVEKISGGITNLLLKVSVKQENCIEETITVRLYGPNTEYIIDRQRELQATKYITAAGFGAKWLGIFGNGMVQSFINAHTLSPSDMREPKLAAKIAKQLQRFHHVEIPGSKEPQLWNDVWKFFEKASVLEFDDSKMQKTYETISFKEVHDEIVELKGLCDLLKSPVIFAHNDLLSGNIMMNCEEDKLYFIDYEYASYNYRGYDIGDHFAEYAGFECDYDLYPNMNEQYHFLRHYLKPERPQEVSEKDLETLYVEANTFSLASHIFWALWGLIQAKMSAIEFDYLGYFFLRYHEYKRHKEKYFLLAQSYLSGCKNEMSR* >Glyma06g24820.4 sequence type=predicted peptide gene model=Glyma06g24820 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTNWDRGSIVNATLRGLCVLPISVISWDNKKSTQEEEEEETETPLARFESTQHTTQTNPHPPFFFFISFHTPPCSSCCFFSSLSSLCFSSPSVESMGAEVKIWNPVEVAEQARHDYASQIHPSHLTIDPSLELPQMTPLVLKLCKDMFKAWSNLDDSCFVVEKISGGITNLLLKVSVKQENCIEETITVRLYGPNTEYIIDRQRELQATKYITAAGFGAKWLGIFGNGMVQSFINAHTLSPSDMREPKLAAKIAKQLQRFHHVEIPGSKEPQLWNDVWKFFEKASVLEFDDSKMQKTYETISFKEVHDEIVELKGLCDLLKSPVIFAHNDLLSGNIMMNCEEDKLYFIDYEYASYNYRGYDIGDHFAEYAGFECDYDLYPNMNEQYHFLRHYLKPERPQEVSEKDLETLYVEANTFSLASHIFWALWGLIQVIFPLIWSLCFLNQMTSSTVDIASNDK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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