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Report for Sequence Feature Glyma06g24540

Feature Type:gene_model
Chromosome:Gm06
Start:22069871
stop:22075906
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g24540
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26710AT Annotation by Michelle Graham. TAIR10: Cytochrome P450 superfamily protein | chr2:11380700-11383413 FORWARD LENGTH=520 SoyBaseE_val: 0ISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009741GO-bp Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus SoyBaseN/AISS
GO:0010268GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid homeostasis SoyBaseN/AISS
GO:0016131GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0008395GO-mf Annotation by Michelle Graham. GO Molecular Function: steroid hydroxylase activity SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0157 KOG Cytochrome P450 CYP4/CYP19/CYP26 subfamilies JGI ISS
PTHR24282Panther FAMILY NOT NAMED JGI ISS
PTHR24282:SF174Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_A4PBE8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 enzyme n=1 Tax=Pisum sativum RepID=A4PBE8_PEA SoyBaseE_val: 0ISS
UniRef100_I1KDA4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KDA4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g24540
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g24540 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g215200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g24540
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g24540
>Glyma06g24540.1   sequence type=CDS   gene model=Glyma06g24540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGGAAGAGTTTAAGATTCTTTTTGTCTTTCTCATGACTTTGCTACTTGTGCTCAAGGTCACAATCTCGCTCTGGTGGAGACCAAGGAAAATTGAGGGCCATTTCTCCAACCAAGGAATCAGAGGACCCCCTTATCGTTTCTTCATTGGGAATGTGAAAGAACTCGTGGGAATGATGATGAAAGCTTCCGAAAAACCCATGCCTTTCTCTCACAACATTCTCCCAAGAGTGCTTTCTTTCTACCACCACTGGAAGAAAATTTACGGTGCAACATTCCTTGTATGGTTTGGACCCACTGTTCGAGTCACCATCTCTGATCCAGACCTCATCCGGGAAATCTTCACCTCCAAGTCAGAATTATATGAGAAAAACGAATCTCCCCCACTTGTGAAGCAGCTTGAAGGTGATGGACTCCTTAGCCTCAAAGGAGAAAAATGGGCTCACCACAGAAAAATCATCTCTCCCACCTTTCATATGGAAAACCTCAAAATGTTGATACCGATTATGGCAACAAGCGTGGTTGAGATGTTGGAGAAGTGGAAGGCAATGGCAGAGGAGAAGGGTGAGGTGGAAATCGAAGTTTCGGAGTGTTTTCAAACCTTAACAGAAGATGTCATTACTAGGACAGCGTTTGGGAGCAGCTACGAAGATGGCAAAGCCGTTTTTCGGTTACAAGCCCAACAAATGGTCCTAGCAGCTGATGCCTTCCAGAAAGTGTTCATTCCAGGTTATAGATTCTTCCCCACGAGGAGGAATATAAATTCTTGGAAACTGGACAAGGAAATCAAGAAATCGTTGGTGAAGATCATCGAACGACGAAGAAAAGAGAATGCGTGTGGGAAAGAAGAAACAAAAAGGCCAACGGATTTGCTGGGGCTCATGATTTGGGCTTCCAACAACAACAACAACACCACCTCCAATGTGAACGTAACGGTGGATGACATAGTGGAAGAGTGCAAAACCTTTTTCTTCGCAGGCAAACACACCACTTCGAATTTGCTAACGTGGACCACGATCCTGCTCGCGATGCATCCGCAGTGGCAGATACGGGCACGTGAGGAGCTCGTGAGTGTGTGCGGTGCACGTCACATCCCCACCAAGGAGGATCTTGCCAAGCTTAAGACACTGAGCATGATCGTGAACGAGTCTCTGAGGCTCTACCCTCCCACAATCGCGACCATTAGAAGAACAAAAGCCGACGTGGAGCTAGGGCCGTACAAGATCCCGTGCGGGACGGAGCTCCTGATCCCCATCCTGGCCGTGCACCACGACCAGGCCACGTGGGGCAGCAACGCGACCGAGTTCAACCCGGGTCGCTTCTCGAACGGCGTGTCCCGCGCCGCGCGCCTCCCTTTCGCCTTCATCCCCTTCGGCCTCGGCGCCCGCACCTGCATCGGCCAGAACCTCGCACTTCTCCAGACCAAACTCACCCTCGCCGTCATGGTTCGAGGTTTCAACTTCAGGCTGGCGCCGACTTATCAACACGCGCCAACGGTTCTCATGCTGCTCTACCCTCAATATGGTGCACCAATCCGTTTCCAACCAATACCCGCACCCACTGTGAATTGTTACTGA
Predicted protein sequences of Glyma06g24540
>Glyma06g24540.1   sequence type=predicted peptide   gene model=Glyma06g24540   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMEEFKILFVFLMTLLLVLKVTISLWWRPRKIEGHFSNQGIRGPPYRFFIGNVKELVGMMMKASEKPMPFSHNILPRVLSFYHHWKKIYGATFLVWFGPTVRVTISDPDLIREIFTSKSELYEKNESPPLVKQLEGDGLLSLKGEKWAHHRKIISPTFHMENLKMLIPIMATSVVEMLEKWKAMAEEKGEVEIEVSECFQTLTEDVITRTAFGSSYEDGKAVFRLQAQQMVLAADAFQKVFIPGYRFFPTRRNINSWKLDKEIKKSLVKIIERRRKENACGKEETKRPTDLLGLMIWASNNNNNTTSNVNVTVDDIVEECKTFFFAGKHTTSNLLTWTTILLAMHPQWQIRAREELVSVCGARHIPTKEDLAKLKTLSMIVNESLRLYPPTIATIRRTKADVELGPYKIPCGTELLIPILAVHHDQATWGSNATEFNPGRFSNGVSRAARLPFAFIPFGLGARTCIGQNLALLQTKLTLAVMVRGFNFRLAPTYQHAPTVLMLLYPQYGAPIRFQPIPAPTVNCY*






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