Glyma06g24470 - SoyBase

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Report for Sequence Feature Glyma06g24470

Feature Type:	gene_model
Chromosome:	Gm06
Start:	21854065
stop:	21862629
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g24470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G20140	AT	Annotation by Michelle Graham. TAIR10: SOUL heme-binding family protein \| chr5:6799047-6800892 REVERSE LENGTH=378	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009535	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
PTHR11220	Panther	HEME-BINDING PROTEIN-RELATED	JGI		ISS
PTHR11220:SF1	Panther	HEME-BINDING PROTEIN-RELATED	JGI		ISS
PF04832	PFAM	SOUL heme-binding protein	JGI		ISS
PF10184	PFAM	Uncharacterized conserved protein (DUF2358)	JGI		ISS
UniRef100_G7IQI5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heme-binding-like protein n=1 Tax=Medicago truncatula RepID=G7IQI5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KD99	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD99_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g24470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g24470 not represented in the dataset	Glyma06g24470 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g24470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g214700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g24470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g24470

Limit To All Plant Sequences

>Glyma06g24470.2   sequence type=transcript   gene model=Glyma06g24470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAGACTCCCATGCCCATGTGGACTAGTTTGGACCATTTGTTCCTCCAATTATCTGGTATGTGGCTATGATTCTCTCTCTTCAGATTCCATCCCCATGGCAACGTCCAACCTCTCCCACCAAACTGCACGGCCGTTCCCCACAGCGTGCGTCAGTTCCCGGCCACCAAGCGCCGCCGTTAACCTCCGGCGGCACCTCCCACCTCCTCCCAAGCCCAGAAAACTGACCCTCAAAACCAACAACCGCTCCAAGTGGGCCATTCAATTGAGCCTAGTGGAGCAAAGCCCACCAAAATCAACGTTCAACATGCAGCAACTCGTGGGCTTTCTCTACGACGATCTAACCCACCTCTTCGACGATCAAGGTATCGATCAAACGGCCTACGACGAACGCGTCTTCTTTCGAGACCCAATCACCAAACACGACACTTTGAGTGGCTACCTCTTCAACATTGCACTTCTAAAAAATCTCTTCAGGCCCCAATTTCAGTTGCATTGGGTCAAACCGACAGGACCGTATGAGATAACTACACGGTGGACCATGGTTATGAAATTGGTGCTACTTCCTTGGAAACCGGAACTGATCTTTACAGGAACTTCCGTTATGGGCATTAACCCAGAAAATGGCAAGTTCTGTAGCCACGTGTTGAGGATTTATAAGACACCAGAATTGGAATCACCCAAATATCAAATATTGAAAAGGACGGAAAATTATGAGGTTAGACAGTACAATCCATTCATAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGTCTACTGGCTTCAATGATGTTGCTGGATATATATTTGGAAAGAATTCCACAACAGAGAAGATACCAATGACTACTCCTGTATTCACGGAAACCAATGATGCTGACCTGTCCAAAGTGTCAATCCAAATAGTTCTTCCATTAGACAAAGAAACAGAAAGTTTACCAAATCCTAATCAAGAAACAGTTCGCTTGAGAAAGGTTGAAGGAGGCATTGCTGCAGTAATGAAGTTTAGTGGAAAGCCCACAGAGGATACTGTTCGTGAAAAGGAGAAAACCCTGCGTGCCAATATCATTAAAGATGGTCTTAAGCCTCAATCTGGTTGTTTGCTTGCACGGTACAATGATCCAGGTCGAACATGGACCTTTATAATGAGGAATGAAGTGCTCATATGGCTAGATGACTTTTCCTTGGATTAGCATCAATGCAGTAACCGTAGCTACTTTTTATCATCACTTGACACTATTTTTCGAACATATCTTTGGCTGTATATGAAAGATATGGTTAGAAATTCTCTTATCAAGGAGGGATGTTTGGAACCAAAAATAGGCTATAGACTACAACATTGAAAGTAGAAAGTTAGTGATTAAGGTACATGTTTATTAGCTGCTATTCATCGAGTTGTAAAAGAACATTAAGTTTACAGTACGCAGTTATATTTATTCTTTATGCTCCTGCAATTTATGTATGGCATAATTCAACAAAAGAAAGGTGCAGCGTTATGATAACTACTTTTAAATTCGAATTATCTTACCTATTCAAGACCACAGCTTGAGGACAAGGTGCCTTTGCCAGCCGAGGATATTGATAGAATACCGCAGCAACCGCAACAAGCACGACCCAAAAGGAACGTGCAAAGACCCACATACCTACTGGACTACATAGAAGAAACTGCCAAATACCGTTAATCATGCATGTTGTATGTGCTTAGCAGCTTGTAATAGCATTGTTAGGAAATATTAGGCTGTCACATGTCCTTTTATATGTCCTTATATAGGAGTTTCGTGTTAGACATGCATGCTGTGCATGCTTAGCAGTTTGTAATAGTATTACTAGGAAATATTAGGCTGCCACATGTCCTTGTATAGGAGTTTCTAAAACTGTCCATAACTTGCAGTATTTGTCTTTAAAAGCACATAAAGCCATGAATAAAGGAAGAAGAAAAAAATCTTATTT

Coding sequences of Glyma06g24470

Limit To All Plant Sequences

>Glyma06g24470.1   sequence type=CDS   gene model=Glyma06g24470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGTCCAACCTCTCCCACCAAACTGCACGGCCGTTCCCCACAGCGTGCGTCAGTTCCCGGCCACCAAGCGCCGCCGTTAACCTCCGGCGGCACCTCCCACCTCCTCCCAAGCCCAGAAAACTGACCCTCAAAACCAACAACCGCTCCAAGTGGGCCATTCAATTGAGCCTAGTGGAGCAAAGCCCACCAAAATCAACGTTCAACATGCAGCAACTCGTGGGCTTTCTCTACGACGATCTAACCCACCTCTTCGACGATCAAGGTATCGATCAAACGGCCTACGACGAACGCGTCTTCTTTCGAGACCCAATCACCAAACACGACACTTTGAGTGGCTACCTCTTCAACATTGCACTTCTAAAAAATCTCTTCAGGCCCCAATTTCAGTTGCATTGGGTCAAACCGACAGGACCGTATGAGATAACTACACGGTGGACCATGGTTATGAAATTGGTGCTACTTCCTTGGAAACCGGAACTGATCTTTACAGGAACTTCCGTTATGGGCATTAACCCAGAAAATGGCAAGTTCTGTAGCCACGTGGACTTTTGGGATTCAATAGAGAAAAATGAGTATTTTTCTTTTGAAGGTTTGTTGGATGTAATCAAACAGTTGAGGATTTATAAGACACCAGAATTGGAATCACCCAAATATCAAATATTGAAAAGGACGGAAAATTATGAGGTTAGACAGTACAATCCATTCATAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGTCTACTGGCTTCAATGATGTTGCTGGATATATATTTGGAAAGAATTCCACAACAGAGAAGATACCAATGACTACTCCTGTATTCACGGAAACCAATGATGCTGACCTGTCCAAAGTGTCAATCCAAATAGTTCTTCCATTAGACAAAGAAACAGAAAGTTTACCAAATCCTAATCAAGAAACAGTTCGCTTGAGAAAGGTTGAAGGAGGCATTGCTGCAGTAATGAAGTTTAGTGGAAAGCCCACAGAGGATACTGTTCGTGAAAAGGAGAAAACCCTGCGTGCCAATATCATTAAAGATGGTCTTAAGCCTCAATCTGGTTGTTTGCTTGCACGGTACAATGATCCAGGTCGAACATGGACCTTTATAATGAGGAATGAAGTGCTCATATGGCTAGATGACTTTTCCTTGGATTAG

>Glyma06g24470.2   sequence type=CDS   gene model=Glyma06g24470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACGTCCAACCTCTCCCACCAAACTGCACGGCCGTTCCCCACAGCGTGCGTCAGTTCCCGGCCACCAAGCGCCGCCGTTAACCTCCGGCGGCACCTCCCACCTCCTCCCAAGCCCAGAAAACTGACCCTCAAAACCAACAACCGCTCCAAGTGGGCCATTCAATTGAGCCTAGTGGAGCAAAGCCCACCAAAATCAACGTTCAACATGCAGCAACTCGTGGGCTTTCTCTACGACGATCTAACCCACCTCTTCGACGATCAAGGTATCGATCAAACGGCCTACGACGAACGCGTCTTCTTTCGAGACCCAATCACCAAACACGACACTTTGAGTGGCTACCTCTTCAACATTGCACTTCTAAAAAATCTCTTCAGGCCCCAATTTCAGTTGCATTGGGTCAAACCGACAGGACCGTATGAGATAACTACACGGTGGACCATGGTTATGAAATTGGTGCTACTTCCTTGGAAACCGGAACTGATCTTTACAGGAACTTCCGTTATGGGCATTAACCCAGAAAATGGCAAGTTCTGTAGCCACGTGTTGAGGATTTATAAGACACCAGAATTGGAATCACCCAAATATCAAATATTGAAAAGGACGGAAAATTATGAGGTTAGACAGTACAATCCATTCATAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGTCTACTGGCTTCAATGATGTTGCTGGATATATATTTGGAAAGAATTCCACAACAGAGAAGATACCAATGACTACTCCTGTATTCACGGAAACCAATGATGCTGACCTGTCCAAAGTGTCAATCCAAATAGTTCTTCCATTAGACAAAGAAACAGAAAGTTTACCAAATCCTAATCAAGAAACAGTTCGCTTGAGAAAGGTTGAAGGAGGCATTGCTGCAGTAATGAAGTTTAGTGGAAAGCCCACAGAGGATACTGTTCGTGAAAAGGAGAAAACCCTGCGTGCCAATATCATTAAAGATGGTCTTAAGCCTCAATCTGGTTGTTTGCTTGCACGGTACAATGATCCAGGTCGAACATGGACCTTTATAATGAGGAATGAAGTGCTCATATGGCTAGATGACTTTTCCTTGGATTAG

Predicted protein sequences of Glyma06g24470

Limit To All Plant Sequences

>Glyma06g24470.1   sequence type=predicted peptide   gene model=Glyma06g24470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSNLSHQTARPFPTACVSSRPPSAAVNLRRHLPPPPKPRKLTLKTNNRSKWAIQLSLVEQSPPKSTFNMQQLVGFLYDDLTHLFDDQGIDQTAYDERVFFRDPITKHDTLSGYLFNIALLKNLFRPQFQLHWVKPTGPYEITTRWTMVMKLVLLPWKPELIFTGTSVMGINPENGKFCSHVDFWDSIEKNEYFSFEGLLDVIKQLRIYKTPELESPKYQILKRTENYEVRQYNPFIVVETNGDKLSGSTGFNDVAGYIFGKNSTTEKIPMTTPVFTETNDADLSKVSIQIVLPLDKETESLPNPNQETVRLRKVEGGIAAVMKFSGKPTEDTVREKEKTLRANIIKDGLKPQSGCLLARYNDPGRTWTFIMRNEVLIWLDDFSLD*

>Glyma06g24470.2   sequence type=predicted peptide   gene model=Glyma06g24470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATSNLSHQTARPFPTACVSSRPPSAAVNLRRHLPPPPKPRKLTLKTNNRSKWAIQLSLVEQSPPKSTFNMQQLVGFLYDDLTHLFDDQGIDQTAYDERVFFRDPITKHDTLSGYLFNIALLKNLFRPQFQLHWVKPTGPYEITTRWTMVMKLVLLPWKPELIFTGTSVMGINPENGKFCSHVLRIYKTPELESPKYQILKRTENYEVRQYNPFIVVETNGDKLSGSTGFNDVAGYIFGKNSTTEKIPMTTPVFTETNDADLSKVSIQIVLPLDKETESLPNPNQETVRLRKVEGGIAAVMKFSGKPTEDTVREKEKTLRANIIKDGLKPQSGCLLARYNDPGRTWTFIMRNEVLIWLDDFSLD*

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