Glyma06g23580 - SoyBase

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Report for Sequence Feature Glyma06g23580

Feature Type:	gene_model
Chromosome:	Gm06
Start:	20904283
stop:	20914087
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g23580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G19950	AT	Annotation by Michelle Graham. TAIR10: Domain of unknown function (DUF1767) \| chr5:6741163-6743702 REVERSE LENGTH=443	SoyBase	E_val: 3.00E-98	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR13681	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR13681:SF2	Panther	gb def: Hypothetical protein At5g19950	JGI		ISS
PF08585	PFAM	Domain of unknown function (DUF1767)	JGI		ISS
UniRef100_Q8L502	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5G19950 protein n=1 Tax=Arabidopsis thaliana RepID=Q8L502_ARATH	SoyBase	E_val: 1.00E-95	ISS
UniRef100_UPI00023398BF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023398BF related cluster n=1 Tax=unknown RepID=UPI00023398BF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g23580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g23580

Paralog	Evidence	Comments
Glyma04g21826	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g23580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g211500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g23580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g23580

Limit To All Plant Sequences

>Glyma06g23580.2   sequence type=transcript   gene model=Glyma06g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATAGCATTGGGGTTTTTTGAAAGGTTGTGCCTTGCGCTACCGGTTGAAACTCGAGCACACAGTTGAAGTCGAACACACACGCAGAGATGATGGAAGAGAATTCGCGTGGTTGGGACTCAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGATACGGACCGATTGAAGGCCATCATCGACATTCAATCCGCACTCGCTGATGACCGTTCCAGATTGGTAGATTCTGTTGAGTCAGAGCTCCTCAATTCCGACCTCAGATCCATCGCCGCCAAGTCCTTGCCCCAACCCTCTCTTCTTCGCAACGCTTCCACTTTCCTTCACGGCCCCAAAGTCCTTCAGATAAGTTCAGTGAGGGACATATCTAAGAGCAGTGTGGATGAGTTTTTGAAAAACTCAGGTGATAGGAGAGTTCTCAGATTGTGTCTCACTGATGGTCACTACGAAATAACTGCTGTGGAATATTCTCACATTCCTTCTATACCCGACAATGTGGTTCCGGGTACTAAGATTCGTTTGGAAAATAAAGTTGCGGTTCACAATGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGAGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGGTATTGCAGATTATAACTCTAGCAGAAGTCGTAAGCCAATTGCTGTGGTTGGTGAAGCTGAGATGAGACCAACAAGTACTGCAGATTATAACTCTAGTAGAAGTCGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCACCTGATTTCCAGCAAGACCCTAATCAGAAAGCAGATGCAAATCTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGGCTAGTAGTAGTTCAGGCACAAGGCCAAAAGAAGTTGTGGAATCTGTTCCTGTTCAAAATCAAGCAGCTGCCCAAAAGTTACTTCAGAAGTTAAATCACCCAAGTCAGAATGATCGACATCATAGGGGTTGGAAACATAGGGGCAAGGGGAAACAAGAAGATCCAGTTGTATTCACTCTGGAAGAATATGAAAACAGAAAGGCCCAGACAAAGCCTTCTATTAAAGACTGGGATCTAGATATCAGTCGTGATGAGCATCTTGCTAGACAGCTTCAAAATCAACTAGACCTTGAAGATTCTCGGGTAGGAAGGGGTACTTATGAAGACAAGGCACAAGATATTAGGATGAGTATGTTCGCATATGAAAGGGATTCTGACAGCAGCCATCAAATGGGGCAAGGAGGAAGGGGAAGGGGAAGGGGAAGAGGAAAGGGTAGAGGAAGGGGGAGAGGAAGACATGGTTAACTATCATGATTTTGGTTTCAAGTGTTTCTTGTGAAGATGAAAATCTTGGCTTCAGAATATGTTAAGAGTTCCTTGGGCAAAATCCAACGACAAGACAATCGATAGCATAGGGTTCAGTTTTCAAGGTGATCAACCTTTGTGCTTTCTTTGTTAAATGTATCATAAATTGGGTATTTATATTCTTTTCTTTCCATATAGATTGATCAGTGAACTTATCACCACATTTCTTATTTTGAATATACTGAAGCAGAGTTCGAGTGCTTATAAGCTATAGTTTGACTAGCCTCCCTGATATTCTCAACTCCAACCTTACCGAATCTCGTCATCCAATAATATACTTGCATTGTTTAGTGATAGGTCCATGGTGATTAGTGAAGAGAAATTTGTAACTTCTAAGAAATGGTGGATAGCGGATAGACCTTACGTATGACAAATCATGTTTGAATTAGTCGCAAGTATTTGGAGTTTTGAGATTTTAAATTGAA

Coding sequences of Glyma06g23580

Limit To All Plant Sequences

>Glyma06g23580.1   sequence type=CDS   gene model=Glyma06g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAGAGAATTCGCGTGGTTGGGACTCAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGATACGGACCGATTGAAGGCCATCATCGACATTCAATCCGCACTCGCTGATGACCGTTCCAGATTGGTAGATTCTGTTGAGTCAGAGCTCCTCAATTCCGACCTCAGATCCATCGCCGCCAAGTCCTTGCCCCAACCCTCTCTTCTTCGCAACGCTTCCACTTTCCTTCACGGCCCCAAAGTCCTTCAGATAAGTTCAGTGAGGGACATATCTAAGAGCAGTGTGGATGAGTTTTTGAAAAACTCAGGTGATAGGAGAGTTCTCAGATTGTGTCTCACTGATGGTCACTACGAAATAACTGCTGTGGAATATTCTCACATTCCTTCTATACCCGACAATGTGGTTCCGGGTACTAAGATTCGTTTGGAAAATAAAGTTGCGGTTCACAATGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGAGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGATTATAACTCTAGCAGAAGTCGTAAGCCAATTGCTGTGGTTGGTGAAGCTGAGATGAGACCAACAAGTACTGCAGATTATAACTCTAGTAGAAGTCGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCACCTGATTTCCAGCAAGACCCTAATCAGAAAGCAGATGCAAATCTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGGCTAGTAGTAGTTCAGGCACAAGGCCAAAAGAAGTTGTGGAATCTGTTCCTGTTCAAAATCAAGCAGCTGCCCAAAAGTTACTTCAGAAGTTAAATCACCCAAGTCAGAATGATCGACATCATAGGGGTTGGAAACATAGGGGCAAGGGGAAACAAGAAGATCCAGTTGTATTCACTCTGGAAGAATATGAAAACAGAAAGGCCCAGACAAAGCCTTCTATTAAAGACTGGGATCTAGATATCAGTCGTGATGAGCATCTTGCTAGACAGCTTCAAAATCAACTAGACCTTGAAGATTCTCGGGTAGGAAGGGGTACTTATGAAGACAAGGCACAAGATATTAGGATGAGTATGTTCGCATATGAAAGGGATTCTGACAGCAGCCATCAAATGGGGCAAGGAGGAAGGGGAAGGGGAAGGGGAAGAGGAAAGGGTAGAGGAAGGGGGAGAGGAAGACATGGTTAA

>Glyma06g23580.2   sequence type=CDS   gene model=Glyma06g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAAGAGAATTCGCGTGGTTGGGACTCAGGAGGAATGGTGTTAGAAACCCTAAGAAAACGAGGTTGGTGTTTGGAAGATACGGACCGATTGAAGGCCATCATCGACATTCAATCCGCACTCGCTGATGACCGTTCCAGATTGGTAGATTCTGTTGAGTCAGAGCTCCTCAATTCCGACCTCAGATCCATCGCCGCCAAGTCCTTGCCCCAACCCTCTCTTCTTCGCAACGCTTCCACTTTCCTTCACGGCCCCAAAGTCCTTCAGATAAGTTCAGTGAGGGACATATCTAAGAGCAGTGTGGATGAGTTTTTGAAAAACTCAGGTGATAGGAGAGTTCTCAGATTGTGTCTCACTGATGGTCACTACGAAATAACTGCTGTGGAATATTCTCACATTCCTTCTATACCCGACAATGTGGTTCCGGGTACTAAGATTCGTTTGGAAAATAAAGTTGCGGTTCACAATGGTATTGTTTGCTTAAATCCTAAAGTATTGACTGTATTAGGAGGTGTTGTTCAATCGCTCTATGAAGAATGGGAGATGAACCAAAAATATTCAGGATTCTCCCGATCATCTTTAAGAAAGCTAGAGAATCGAGATACAGGTGGTCCTCCACAGTTTGTGAAGCTGCAGGTTGGATCTTCTTCAGGTATTGCAGATTATAACTCTAGCAGAAGTCGTAAGCCAATTGCTGTGGTTGGTGAAGCTGAGATGAGACCAACAAGTACTGCAGATTATAACTCTAGTAGAAGTCGTAAGCCAATTGCTGTGGTTGGTGAAGCTGGGTTGAGACCACCTGATTTCCAGCAAGACCCTAATCAGAAAGCAGATGCAAATCTACAATCCAAACCACCTCAAGAAAGAGCTGAAGACAAGGCTAGTAGTAGTTCAGGCACAAGGCCAAAAGAAGTTGTGGAATCTGTTCCTGTTCAAAATCAAGCAGCTGCCCAAAAGTTACTTCAGAAGTTAAATCACCCAAGTCAGAATGATCGACATCATAGGGGTTGGAAACATAGGGGCAAGGGGAAACAAGAAGATCCAGTTGTATTCACTCTGGAAGAATATGAAAACAGAAAGGCCCAGACAAAGCCTTCTATTAAAGACTGGGATCTAGATATCAGTCGTGATGAGCATCTTGCTAGACAGCTTCAAAATCAACTAGACCTTGAAGATTCTCGGGTAGGAAGGGGTACTTATGAAGACAAGGCACAAGATATTAGGATGAGTATGTTCGCATATGAAAGGGATTCTGACAGCAGCCATCAAATGGGGCAAGGAGGAAGGGGAAGGGGAAGGGGAAGAGGAAAGGGTAGAGGAAGGGGGAGAGGAAGACATGGTTAA

Predicted protein sequences of Glyma06g23580

Limit To All Plant Sequences

>Glyma06g23580.1   sequence type=predicted peptide   gene model=Glyma06g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEENSRGWDSGGMVLETLRKRGWCLEDTDRLKAIIDIQSALADDRSRLVDSVESELLNSDLRSIAAKSLPQPSLLRNASTFLHGPKVLQISSVRDISKSSVDEFLKNSGDRRVLRLCLTDGHYEITAVEYSHIPSIPDNVVPGTKIRLENKVAVHNGIVCLNPKVLTVLGGVVQSLYEEWEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLQVGSSSDYNSSRSRKPIAVVGEAEMRPTSTADYNSSRSRKPIAVVGEAGLRPPDFQQDPNQKADANLQSKPPQERAEDKASSSSGTRPKEVVESVPVQNQAAAQKLLQKLNHPSQNDRHHRGWKHRGKGKQEDPVVFTLEEYENRKAQTKPSIKDWDLDISRDEHLARQLQNQLDLEDSRVGRGTYEDKAQDIRMSMFAYERDSDSSHQMGQGGRGRGRGRGKGRGRGRGRHG*

>Glyma06g23580.2   sequence type=predicted peptide   gene model=Glyma06g23580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEENSRGWDSGGMVLETLRKRGWCLEDTDRLKAIIDIQSALADDRSRLVDSVESELLNSDLRSIAAKSLPQPSLLRNASTFLHGPKVLQISSVRDISKSSVDEFLKNSGDRRVLRLCLTDGHYEITAVEYSHIPSIPDNVVPGTKIRLENKVAVHNGIVCLNPKVLTVLGGVVQSLYEEWEMNQKYSGFSRSSLRKLENRDTGGPPQFVKLQVGSSSGIADYNSSRSRKPIAVVGEAEMRPTSTADYNSSRSRKPIAVVGEAGLRPPDFQQDPNQKADANLQSKPPQERAEDKASSSSGTRPKEVVESVPVQNQAAAQKLLQKLNHPSQNDRHHRGWKHRGKGKQEDPVVFTLEEYENRKAQTKPSIKDWDLDISRDEHLARQLQNQLDLEDSRVGRGTYEDKAQDIRMSMFAYERDSDSSHQMGQGGRGRGRGRGKGRGRGRGRHG*

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