Glyma06g23570 - SoyBase

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Report for Sequence Feature Glyma06g23570

Feature Type:	gene_model
Chromosome:	Gm06
Start:	20893661
stop:	20901017
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g23570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G22950	AT	Annotation by Michelle Graham. TAIR10: SNF7 family protein \| chr5:7681380-7682720 FORWARD LENGTH=229	SoyBase	E_val: 2.00E-129	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0015031	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein transport	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0000815	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ESCRT III complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
KOG3229	KOG	Vacuolar sorting protein VPS24	JGI		ISS
PTHR10476	Panther	SNF7-RELATED	JGI		ISS
PTHR10476:SF1	Panther	CHMP1 - RELATED	JGI		ISS
PF03357	PFAM	Snf7	JGI		ISS
UniRef100_D7M1L2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SNF7 family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7M1L2_ARALL	SoyBase	E_val: 4.00E-128	ISS
UniRef100_I1KD82	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD82_SOYBN	SoyBase	E_val: 3.00E-159	ISS

Expression Patterns of Glyma06g23570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g23570 not represented in the dataset	Glyma06g23570 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g23570

Paralog	Evidence	Comments
Glyma04g21900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g23570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g211400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g23570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g23570

Limit To All Plant Sequences

>Glyma06g23570.4   sequence type=transcript   gene model=Glyma06g23570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGAGTTTTGCCGTGTTCGAGTATTACAATTGTTTATGGGCATCCAACATGTTTAATATTTAAAAAGAAAATAATTATTAATTTTGTAACAAAAAGAATTTGTTAAATTTCAACATGAACAAATGGTTCATAAAACGCATTTGACACGAAGCTAATCGCATCGCGCCTCACCTCCACTGCTGCATCTCAGAATCGGGACGCCGTCTTCCTCACTACATCGTCCCTATTAGCACACTAGATTTTGCCAAAAAGATCAAATTTTGAAGCAATTGTTTTTGTGGGCAACATTCATTCTTTCCTATCCCTCGAAAAATCAATTTTCGGCTTCGGGCATCGGAAATGGAGAAGGTGATGAACATTCTGAAGCCGAAGCCAAATCCGCAGCAACTATTGAGGGATTGGCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCTATTAGAGAAGCTGCAAAGAGGAATGACATGGGCTCTGCAAAGGCACTTGCCAAGGAACTTGTGAGATCTAGGCAAACTGTGAACCGCCTTTATGAAAACAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAGCTTGTCAATAATCTCATGAAGGCTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATTCTGAGGACATAGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTGACCGCAATAGCTGGTGAGACAGCTGCTCAACTTCCTGAAGCTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCCGGCTTGCTAAAGTTCGATCATAATCAAGTTTCTAATTTCGCAGCCTCTACCTTGTACCCTGGTATGTTATAAGAGAGAGATGTTAACAGGTTTATTGTAACCTATTTGTCATATCTATATTGAAAATGACAATTGATAACACTAATGGGAAAGATGGTATTGGAATGTGCAGTTTGTATGTAAATTACACAGAGTTCTTGAAAGTGTGTCAAGCTATATTGTCTTTCTTCTTAATTTTGTTAATAAGATAATAAGCACGAAGTAACTTCATCTATGATTGAGGATTTATTGCATAACATCTGGTTCTATGTAAAA

Coding sequences of Glyma06g23570

Limit To All Plant Sequences

>Glyma06g23570.3   sequence type=CDS   gene model=Glyma06g23570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGTGATGAACATTCTGAAGCCGAAGCCAAATCCGCAGCAACTATTGAGGGATTGGCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCTATTAGAGAAGCTGCAAAGAGGAATGACATGGGCTCTGCAAAGGCACTTGCCAAGGAACTTGTGAGATCTAGGCAAACTGTGAACCGCCTTTATGAAAACAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAGCTTGTCAATAATCTCATGAAGGCTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATTCTGAGGACATAGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTGACCGCAATAGCTGGTGAGACAGCTGCTCAACTTCCTGAAGCTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCCGGCTTGCTAAAGTTCGATCATAA

>Glyma06g23570.4   sequence type=CDS   gene model=Glyma06g23570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAAGGTGATGAACATTCTGAAGCCGAAGCCAAATCCGCAGCAACTATTGAGGGATTGGCAGCGCAGGCTTCGCCAAGAGTGTCGCAACATTGAGCGCCAAATTCGCGATATACAGAGAGAAGAAAAAAATGTGCAGAAGGCTATTAGAGAAGCTGCAAAGAGGAATGACATGGGCTCTGCAAAGGCACTTGCCAAGGAACTTGTGAGATCTAGGCAAACTGTGAACCGCCTTTATGAAAACAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTGTTGCAATTGCTCGTACTGTGGGACATCTATCAAAGAGTGCTGAGGTTATGAAGCTTGTCAATAATCTCATGAAGGCTCCTGAAATGGCGGTGACAATGCAAGAGTTCAGCAAAGAAATGACAAAGGCAGGAGTTATCGAGGAGATAGTAAACGATGCCGTCGACTCAGCGCTAGATTCTGAGGACATAGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTGACCGCAATAGCTGGTGAGACAGCTGCTCAACTTCCTGAAGCTGTGAGGAAAGAGAGGGTGAAGCTACCTGCTCAAAGTGTTGGCGCAGAGGAAGATGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCCGGCTTGCTAAAGTTCGATCATAA

Predicted protein sequences of Glyma06g23570

Limit To All Plant Sequences

>Glyma06g23570.3   sequence type=predicted peptide   gene model=Glyma06g23570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKVMNILKPKPNPQQLLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIREAAKRNDMGSAKALAKELVRSRQTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVTMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIEEEVDKVLTAIAGETAAQLPEAVRKERVKLPAQSVGAEEDAIAEGVDDEEEMEEIRARLAKVRS*

>Glyma06g23570.4   sequence type=predicted peptide   gene model=Glyma06g23570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEKVMNILKPKPNPQQLLRDWQRRLRQECRNIERQIRDIQREEKNVQKAIREAAKRNDMGSAKALAKELVRSRQTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPEMAVTMQEFSKEMTKAGVIEEIVNDAVDSALDSEDIEDEIEEEVDKVLTAIAGETAAQLPEAVRKERVKLPAQSVGAEEDAIAEGVDDEEEMEEIRARLAKVRS*

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