Glyma06g23560 - SoyBase

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Report for Sequence Feature Glyma06g23560

Feature Type:	gene_model
Chromosome:	Gm06
Start:	20880884
stop:	20885926
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g23560

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G08510	AT	Annotation by Michelle Graham. TAIR10: fatty acyl-ACP thioesterases B \| chr1:2691546-2693409 REVERSE LENGTH=412	SoyBase	E_val: 0	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0000036	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0016297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acyl-[acyl-carrier-protein] hydrolase activity	SoyBase	N/A	ISS
GO:0016790	GO-mf	Annotation by Michelle Graham. GO Molecular Function: thiolester hydrolase activity	SoyBase	N/A	ISS
PF01643	PFAM	Acyl-ACP thioesterase	JGI		ISS
PF12590	PFAM	Acyl-ATP thioesterase	JGI		ISS
UniRef100_A9P5P3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Acyl ACP-thioesterase n=1 Tax=Arachis hypogaea RepID=A9P5P3_ARAHY	SoyBase	E_val: 0	ISS
UniRef100_I1KD81	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD81_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g23560

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g23560

Paralog	Evidence	Comments
Glyma04g21910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g23560 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g211300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g23560

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g23560

Limit To All Plant Sequences

>Glyma06g23560.1   sequence type=CDS   gene model=Glyma06g23560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCAACAGCTGCTACGGCGTCGTTTCTCCCTGTGCCTTCGCCGGACGCTGGAAAAGGGAAACCCAAGGGTGGTGGTGGCGGCGGCGTTTCTGTGAACCTCGGAGGACTCAAAGAGAAGCAAGGTTTGTGCGGTTGCTTGCAGGTCAAGGCAAACGCACAAGCCCCTCCGAAGACCATGGAGAAGGTTGAGAATGATTTGCCATGGTTGCCGTCGTCGTCGATTTCGCACGCCCCGAGGACTTTTATAAATCAGTTACCTGACTGGAGCATGCTTCTGGCCGCCATCACCACCGTGTTCCTCGCGGCGGAGAAGCAGTGGATGATGCTGGATTGGAAGCCGCGCCGCCCCGACATGCTCATTGACCCCTTTGGGATTGGGAAGATCGTGCAGGACGGGCTCGTGTTCAGGCAGAACTTCCCCATAAGGTCTTACGAAATTGGCGCAGACAAAACTGCGTCAATAGAGACCTTAATGAATCATTTGCAGGAGACTGCACTTAATCATGTTAAGACCGCTGGGCTTCTAGGTGATGGATTTGGTTCCACGCCTGAAATGTGTAAGAAGAACCTGATATGGGTGGTGACTAAGATGCAGGTTGTGGTTGATAAATATCCTACATGGGGTGATGTTGTTCAAGTAGACACGTGGGTTTCTGCATCAGGGAAGAATGGTATGCGTCGTGATTGGCTTGTGCGTGACGCCAAAACTGGTGAAATCTTGACAAGAGCCTCCAGTGTTTGGGTCATGATGAATAAAGTGACAAGAAGACTGTCTAAAATTCCCGAAGAAGTCAGGGCAGAGATAAGCTCTTATTTTGTGGATTCTGCTCCAGTTGTGCCAGAGGATAACAGAAAACTAACCAAACTTGATGATTCAGCTAATTTCATTCGCACTGGTTTAAGTCCCAGATGGCATGATCTAGATGTGAATCAGCATGTTAACAATGTGAAGTATGTTGGGTGGATTCTGGAGAGTGCTCCGCAGCCACTTTTGGAGAGCCATGAGCTATGTGCCATGACATTGGAGTACAGGAGGGAGTGTGGCAGGAACAGTGTGCTAGATTCCCTCTCTGATCTCTCCGGTGCTGATGTTGGAAACTTAGCAGATGATGGATTTTTTGAGTGCAAGCACTTGCTTCGACTTGATGATGGTGCTGAGATTGTGAGGGGCAGGACCGAATGGAGGCCAAAACCCTTAAACAGAAACTTTGGTCATGTTTTGAGTCAGGTTCCTGTTCCAGCAGAAAGCACCTGA

Predicted protein sequences of Glyma06g23560

Limit To All Plant Sequences

>Glyma06g23560.1   sequence type=predicted peptide   gene model=Glyma06g23560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVATAATASFLPVPSPDAGKGKPKGGGGGGVSVNLGGLKEKQGLCGCLQVKANAQAPPKTMEKVENDLPWLPSSSISHAPRTFINQLPDWSMLLAAITTVFLAAEKQWMMLDWKPRRPDMLIDPFGIGKIVQDGLVFRQNFPIRSYEIGADKTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMCKKNLIWVVTKMQVVVDKYPTWGDVVQVDTWVSASGKNGMRRDWLVRDAKTGEILTRASSVWVMMNKVTRRLSKIPEEVRAEISSYFVDSAPVVPEDNRKLTKLDDSANFIRTGLSPRWHDLDVNQHVNNVKYVGWILESAPQPLLESHELCAMTLEYRRECGRNSVLDSLSDLSGADVGNLADDGFFECKHLLRLDDGAEIVRGRTEWRPKPLNRNFGHVLSQVPVPAEST*

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