Glyma06g23410 - SoyBase

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Report for Sequence Feature Glyma06g23410

Feature Type:	gene_model
Chromosome:	Gm06
Start:	20667135
stop:	20669432
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g23410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G18550	AT	Annotation by Michelle Graham. TAIR10: TCP family transcription factor \| chr3:6383769-6385604 FORWARD LENGTH=429	SoyBase	E_val: 1.00E-29	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:2000032	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of secondary shoot formation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF03634	PFAM	TCP family transcription factor	JGI		ISS
UniRef100_Q1WK55	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CYC5 n=1 Tax=Lotus japonicus RepID=Q1WK55_LOTJA	SoyBase	E_val: 4.00E-66	ISS
UniRef100_UPI0002339032	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339032 related cluster n=1 Tax=unknown RepID=UPI0002339032	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g23410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g23410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g210600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g23410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g23410

Limit To All Plant Sequences

>Glyma06g23410.2   sequence type=CDS   gene model=Glyma06g23410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAATCTCAAAGTTCAGATACGTTTCCCTCTCACAATCGCAATGACCCAATTTCCTATTATGACCCAGCATTTTACTACTACAATAGCAGACCCTTTTTCATTGACTCTGAAAGCAACCCAACATCAAAACAAGAAAACAATAACAACAACTGTGACCTTGTTCCTTCTCCTCCTCCTCCTTTGTCCTTTTTCCACTTTCCTTCTCCAACCTTTGAAGATACTCAAAATCAAATTTTCCTCGAACAACGCCACGATTTTCTCCTTCAGTTTTACCATCAACCTCTGCCTCAAGACCCCGAGCCTCAACCTGTTATTACCACCATGGATCTTTCTGTTAAAAAGAGTGATCAGATCCAAAGAAAAAGAGTACCTGGCAAGAGAGATAGGCACAGCAAGATCAACACTGCAAGAGGGTTGAGAGATCGGAGAATGAGACTTTCCCTTGAAGTTGCAAAGAGGTTTTTTGGCCTTCAAGATATGCTGAACTTTGACAAAGCAAGCAAGACTGTGGAGTGGTTACTGAACCAAGCAAAAGTTGAAATCAATCGACTAGTGAAAGAGAAACAGAAGCAGCAGCAGCAGAAGAAGAAGGAGGAGAATGATCATCATTATTATCAAAGTTGTAGCAGTGCTAGTTCGGAATGTGATCAAGAAGGTGTGTCTTGTCTTGATGAGGTTGTGGTGAGTGGAGATCAAGAACAACAACAAGAGAGGGTCGAAAAAGTTGTGAAGAGAAAGGTCAAAAACTCTAGAAAAATCAGTGCATTTGACCCTCTTGCAAAAGAGTGTAGGGAAAGGGCAAGAGAAAGGGCAAGAGAGAGAACAAGAGAAAAGATGAGAAATCGTGGAGTGCTAGCTGAAGAATCAAAGCAATGTGGAGAGGAAACAAATCAGGATCTGATCCAATTGGGTTCTTGGAACCCCTTTGAAACAGGAGATCAAGAATCTGCAGGTGCCAAGAGAACTACTACTCACAGTGTTGCTGAGCATCCTTCTTCCTTGGACGTGATTACTATTGAGGCTAAAGAACAAAGCTACCACGCAGCAAAGGAGCATGATGATGATGATGACGATTCTTTGGTTGTTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACTATGGATTCTCTCAAGATCACCAATTTGCAGAATTTCAGTCCTTGGGAAAGCTGTGGGAGGCCTAA

Predicted protein sequences of Glyma06g23410

Limit To All Plant Sequences

>Glyma06g23410.2   sequence type=predicted peptide   gene model=Glyma06g23410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQSQSSDTFPSHNRNDPISYYDPAFYYYNSRPFFIDSESNPTSKQENNNNNCDLVPSPPPPLSFFHFPSPTFEDTQNQIFLEQRHDFLLQFYHQPLPQDPEPQPVITTMDLSVKKSDQIQRKRVPGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEKQKQQQQKKKEENDHHYYQSCSSASSECDQEGVSCLDEVVVSGDQEQQQERVEKVVKRKVKNSRKISAFDPLAKECRERARERARERTREKMRNRGVLAEESKQCGEETNQDLIQLGSWNPFETGDQESAGAKRTTTHSVAEHPSSLDVITIEAKEQSYHAAKEHDDDDDDSLVVLSKWSPSLIFNNYGFSQDHQFAEFQSLGKLWEA*

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