Glyma06g23310 - SoyBase

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Report for Sequence Feature Glyma06g23310

Feature Type:	gene_model
Chromosome:	Gm06
Start:	20438482
stop:	20441425
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g23310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48960	AT	Annotation by Michelle Graham. TAIR10: Adenine nucleotide alpha hydrolases-like superfamily protein \| chr1:18112552-18113550 FORWARD LENGTH=219	SoyBase	E_val: 1.00E-68	ISS
GO:0002238	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of fungal origin	SoyBase	N/A	ISS
GO:0005575	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cellular component	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00582	PFAM	Universal stress protein family	JGI		ISS
UniRef100_D7KDY5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Universal stress protein family protein n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KDY5_ARALL	SoyBase	E_val: 3.00E-66	ISS
UniRef100_I1KD67	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KD67_SOYBN	SoyBase	E_val: 2.00E-145	ISS

Expression Patterns of Glyma06g23310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g23310

Paralog	Evidence	Comments
Glyma18g22960	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g23310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g209600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g23310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g23310

Limit To All Plant Sequences

>Glyma06g23310.4   sequence type=transcript   gene model=Glyma06g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GACAACTTTGTCTAAGTTAAAGATATATAAATAAAGAGCATTATAGAGAGGAATGTGTGGGGAGAGAGAGAAGAGGGAGCGAGAGAATGGATGTGAAGAAAATTGTGGTTGCTGTCGAAGATGTGGATGCAGCTAGAACTGCTCTACAATGGGCTCTTAGAAACATCATTCGCTATGGTGACATAATCACCCTTCTCCATGTCTATCATCACTCCACAAGATCAAAAAGCAAAGCACGTCTTCTACGCCTAAATGGCTTCAAATTAGCCCTCTCCTTTCAAGACATGTGCAACAACTACCCCAACACAAAGGTTGAAATTATTGTCACGGAAGGGGACCAAGAAGGAGCCAAGATCGCAGCCACGGTGCGAGAGATTGGAGCTTCCATGCTTGTGGTTGGACTCCATGATAGTAGTTTTCTATACAAAGTCCCTCGTACCCCTCCACAAAAAATTCCATACCGAATCTGTCCTAACCCATCTGCAATTATTTGGAGATCAAGGAAGTCTAGGAGAAGGTGAAGGAAACAATTTCGTACAGAAAATCTTTTCGATTAAAGTAGTCCCAAAAGTAATTTGGGTTCCTTTATTTATTTCTTTCTTCTGCTTTCTGATTTCCTATCATTTATGTTCACCTGCCACACGTACACCAACAAAAGAGTGCTGCGCAATTGTACATTATTGTGATAGTATAAAGGATCTTGTGATGTAAACATTACCTTGCTTCAGATTCGAAGAGTGGATTATATTTTTTTTGTTCGATTTATTTATTATCTTGTATCCATGTATTCCGCGCCGATTCTTGCCCCTGTTAAGTGCTAGACGCTGAAGATGTCAA

Coding sequences of Glyma06g23310

Limit To All Plant Sequences

>Glyma06g23310.1   sequence type=CDS   gene model=Glyma06g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTGAAGAAAATTGTGGTTGCTGTCGAAGATGTGGATGCAGCTAGAACTGCTCTACAATGGGCTCTTAGAAACATCATTCGCTATGGTGACATAATCACCCTTCTCCATGTCTATCATCACTCCACAAGATCAAAAAGCAAAGCACGTCTTCTACGCCTAAATGGCTTCAAATTAGCCCTCTCCTTTCAAGACATGTGCAACAACTACCCCAACACAAAGGTTGAAATTATTGTCACGGAAGGGGACCAAGAAGGAGCCAAGATCGCAGCCACGGTGCGAGAGATTGGAGCTTCCATGCTTGTGGTTGGACTCCATGATAGTAGTTTTCTATACAAATTGACAATGGCCCATTCCCATAATAGCATAGGCAGCATTTTCAACTGCAGAGTATTTGCAATCAAGCAGCCTCATGTGTCACCAGTGAGGCCCATGATATCTGCAGTGTCTGTGCTAGACAGTTCAACCAACATGGATTTTTCTCAAATTGATCTTTCTAGATTACAAGTCCCTCGTACCCCTCCACAAAAAATTCCATACCGAATCTGTCCTAACCCATCTGCAATTATTTGGAGATCAAGGAAGTCTAGGAGAAGGTGA

>Glyma06g23310.4   sequence type=CDS   gene model=Glyma06g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTGAAGAAAATTGTGGTTGCTGTCGAAGATGTGGATGCAGCTAGAACTGCTCTACAATGGGCTCTTAGAAACATCATTCGCTATGGTGACATAATCACCCTTCTCCATGTCTATCATCACTCCACAAGATCAAAAAGCAAAGCACGTCTTCTACGCCTAAATGGCTTCAAATTAGCCCTCTCCTTTCAAGACATGTGCAACAACTACCCCAACACAAAGGTTGAAATTATTGTCACGGAAGGGGACCAAGAAGGAGCCAAGATCGCAGCCACGGTGCGAGAGATTGGAGCTTCCATGCTTGTGGTTGGACTCCATGATAGTAGTTTTCTATACAAAGTCCCTCGTACCCCTCCACAAAAAATTCCATACCGAATCTGTCCTAACCCATCTGCAATTATTTGGAGATCAAGGAAGTCTAGGAGAAGGTGA

Predicted protein sequences of Glyma06g23310

Limit To All Plant Sequences

>Glyma06g23310.1   sequence type=predicted peptide   gene model=Glyma06g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVKKIVVAVEDVDAARTALQWALRNIIRYGDIITLLHVYHHSTRSKSKARLLRLNGFKLALSFQDMCNNYPNTKVEIIVTEGDQEGAKIAATVREIGASMLVVGLHDSSFLYKLTMAHSHNSIGSIFNCRVFAIKQPHVSPVRPMISAVSVLDSSTNMDFSQIDLSRLQVPRTPPQKIPYRICPNPSAIIWRSRKSRRR*

>Glyma06g23310.4   sequence type=predicted peptide   gene model=Glyma06g23310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVKKIVVAVEDVDAARTALQWALRNIIRYGDIITLLHVYHHSTRSKSKARLLRLNGFKLALSFQDMCNNYPNTKVEIIVTEGDQEGAKIAATVREIGASMLVVGLHDSSFLYKVPRTPPQKIPYRICPNPSAIIWRSRKSRRR*

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