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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G74030 | AT | Annotation by Michelle Graham. TAIR10: enolase 1 | chr1:27839465-27841901 REVERSE LENGTH=477 | SoyBase | E_val: 0 | ISS |
| GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0000015 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: phosphopyruvate hydratase complex | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0000287 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: magnesium ion binding | SoyBase | N/A | ISS |
| GO:0004634 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: phosphopyruvate hydratase activity | SoyBase | N/A | ISS |
| KOG2670 | KOG | Enolase | JGI | ISS | |
| PTHR11902 | Panther | ENOLASE | JGI | ISS | |
| PF00113 | PFAM | Enolase, C-terminal TIM barrel domain | JGI | ISS | |
| PF03952 | PFAM | Enolase, N-terminal domain | JGI | ISS | |
| UniRef100_E6NU46 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Enolase n=1 Tax=Jatropha curcas RepID=E6NU46_9ROSI | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EDF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EDF4 related cluster n=1 Tax=unknown RepID=UPI000233EDF4 | SoyBase | E_val: 0 | ISS |
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Glyma06g23081 not represented in the dataset |
Glyma06g23081 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma15g25390 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Glyma18g22780 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g208200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g23081.2 sequence type=transcript gene model=Glyma06g23081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high AGCATAGAAAACAAGTGGAAACATGCACAGCATACCACCTCTTCACTTGGAGAGTGATGGTGTTTCCAACAACCTCCAAAAGGCGTTGTTTTTTAGGCTTCTCTTCCACTTGACTTAAGTAAGTTTCATCGCCCCTCACCAACCCCAACAACACTACAACCTTCACATAAATAAAACCCATTGCACATTGCACCTCACTTCAAAAACCTCAAAACACAAAACATTCTTTCCATTTCAACAAACCAAACTCAAAACACTTCACAAAACAATGGCTTTGAATTTGACTCATCAACCAGCCATTAAAGCACCGTCTTCCTCCTCTTTCGCCGCCTCTCGCCCTTTGCGGGCCCCGCAAAGCGTCCCCTTGAGGAGCCCGCAGCGCTCACTTGCCGTGCGCGCCGCCGCCACGGAGTCTCCGGCGCCGGCGGTTACGGCGGTGAGGGAGTGTAAGGTGAAGTCAGTGAAGGCGCGGCAGATCGTGGACAGCCGCGGGAACCCGACGGTGGAGGTGGACCTGGTGGCGAACGGGCTTTTCCGATCGGCGGTGCCGAGCGGCGCGTCGACGGGGATTTACGAGGCGTTGGAGCTGAGGGACGGGGACAAGAGCGTTTACGGCGGGAAGGGAGTTCTTAACGCCGTTAGGAACATCAACGAGGTCTTGGCTCCCAAACTCGTTGGCGTCGACGTTAGGAATCAAGCTGATGTGGATGCTATTATGCTGGAAATTGATGGAACTCCTAACAAATCAAAACTAGGGGCTAATGCAATATTGGGAGTTTCACTGAGTGTATGTAGAGCTGGTGCAGGGGCAAAGGGAGTTCCCTTGTACAAGCACATCCAGGAGATTTCAGGAACAAAGGAACTTGTTATGCCAGTTCCAGCTTTCAATGTTATAAATGGGGGAAGTCATGCTGGGAATAATCTGGCTATGCAAGAATTTATGATACTACCAGTTGGAGCCACTTCATTTGCTGAGGCATTCCGCATGGGCAGTGAAGTTTATCATGTATTAAAGGGAATAATCAAGGCAAAATATGGACAAGATGCATGTAATGTTGGAGATGAAGGAGGATTTGCTCCCAATGTTCAAGATAACAGGGAGGGGCTTGTCTTACTCATGGATGCTATTGAGAAAGCTGGTTATACTGGCAAGATTAAAATAGGCATGGATGTTGCAGCTTCAGAGTTTTACACTAAGGATGGGAAGTATGATTTGAACTTCAAGAAACAACCAAATGATGGAGCTCATGTTCACTCTGCCCAGAGTCTTGGTCAACTATATAAAGATTTTGTGAAAGAATTTCCCATTGTGTCAATTGAGGATCCATTTGATCAAGATGATTGGGGTTCATGGGCTTCACTTCTCTCTTCAGTTGATATTCAACTTGTAGGAGATGATTTGTTAGTTACAAATCCCAAGAGAATAGCTGAGGCCATCCAAAAGAAGGCTTGCAATGGTTTGCTTCTAAAGGTTAACCAAATTGGTACAGTGACTGAATCTATTCAGGCTGCACTTGACTCAAAGGCTGCAGGTTGGGGTGTCATGGTTAGTCATCGGAGTGGTGAAACTGAGGATAACTTCATTGCTGATCTCTCTGTTGGCTTGGCCAGTGGACAGATAAAGACTGGTGCTCCTTGCCGAAGTGAGCGATTGGCAAAGTATAATCAGTTATATTCATTATTTGGGCTTGAAATGGACTTGTCAAGATAAAAGATTGTTAAAAGTGAAACACAAAACAGTATAATTAAGTAGAGTTAGAGTTACTGATTTATGTCAATGTTTCTATTCGGTATGTCTCAGTTTCAATCTTCATTTATTGTTTTTATAAAATATCATTGTTCCTGAAAAGTAATTTTTAGAATGCTTCTTTAGCATTCAATCGCTAGCATGATAATGGAG
>Glyma06g23081.1 sequence type=CDS gene model=Glyma06g23081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTGAATTTGACTCATCAACCAGCCATTAAAGCACCGTCTTCCTCCTCTTTCGCCGCCTCTCGCCCTTTGCGGGCCCCGCAAAGCGTCCCCTTGAGGAGCCCGCAGCGCTCACTTGCCGTGCGCGCCGCCGCCACGGAGTCTCCGGCGCCGGCGGTTACGGCGGTGAGGGAGTGTAAGGTGAAGTCAGTGAAGGCGCGGCAGATCGTGGACAGCCGCGGGAACCCGACGGTGGAGGTGGACCTGGTGGCGAACGGGCTTTTCCGATCGGCGGTGCCGAGCGGCGCGTCGACGGGGATTTACGAGGCGTTGGAGCTGAGGGACGGGGACAAGAGCGTTTACGGCGGGAAGGGAGTTCTTAACGCCGTTAGGAACATCAACGAGGTCTTGGCTCCCAAACTCGTTGGCGTCGACGTTAGGAATCAAGCTGATGTGGATGCTATTATGCTGGAAATTGATGGAACTCCTAACAAATCAAAACTAGGGGCTAATGCAATATTGGGAGTTTCACTGAGTGTATGTAGAGCTGGTGCAGGGGCAAAGGGAGTTCCCTTGTACAAGCACATCCAGGAGATTTCAGGAACAAAGGAACTTGTTATGCCAGTTCCAGCTTTCAATGTTATAAATGGGGGAAGTCATGCTGGGAATAATCTGGCTATGCAAGAATTTATGATACTACCAGTTGGAGCCACTTCATTTGCTGAGGCATTCCGCATGGGCAGTGAAGTTTATCATGTATTAAAGGGAATAATCAAGGCAAAATATGGACAAGATGCATGTAATGTTGGAGATGAAGGAGGATTTGCTCCCAATGTTCAAGATAACAGGGAGGGGCTTGTCTTACTCATGGATGCTATTGAGAAAGCTGGTTATACTGGCAAGATTAAAATAGGCATGGATGTTGCAGCTTCAGAGTTTTACACTAAGGATGGGAAGTATGATTTGAACTTCAAGAAACAACCAAATGATGGAGCTCATGTTCACTCTGCCCAGAGTCTTGGTCAACTATATAAAGATTTTGTGAAAGAATTTCCCATTGTGTCAATTGAGGATCCATTTGATCAAGATGATTGGGGTTCATGGGCTTCACTTCTCTCTTCAGTTGATATTCAACTTGTAGGAGATGATTTGTTAGTTACAAATCCCAAGAGAATAGCTGAGGCCATCCAAAAGAAGGCTTGCAATGGTTTGCTTCTAAAGGTTAACCAAATTGGTACAGTGACTGAATCTATTCAGGCTGCACTTGACTCAAAGGCTGCAGGTTGGGGTGTCATGGTTAGTCATCGGAGTGGTGAAACTGAGGATAACTTCATTGCTGATCTCTCTGTTGGCTTGGCCAGTGGACAGATAAAGACTGGTGCTCCTTGCCGAAGTGAGCGATTGGCAAAGTATAATCAGCTTCTTCGGATTGAAGAGGAACTTGGAAGTGTGCAATATGCCGGTGAAGCTTTCAGATCACCTTAG >Glyma06g23081.2 sequence type=CDS gene model=Glyma06g23081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTTTGAATTTGACTCATCAACCAGCCATTAAAGCACCGTCTTCCTCCTCTTTCGCCGCCTCTCGCCCTTTGCGGGCCCCGCAAAGCGTCCCCTTGAGGAGCCCGCAGCGCTCACTTGCCGTGCGCGCCGCCGCCACGGAGTCTCCGGCGCCGGCGGTTACGGCGGTGAGGGAGTGTAAGGTGAAGTCAGTGAAGGCGCGGCAGATCGTGGACAGCCGCGGGAACCCGACGGTGGAGGTGGACCTGGTGGCGAACGGGCTTTTCCGATCGGCGGTGCCGAGCGGCGCGTCGACGGGGATTTACGAGGCGTTGGAGCTGAGGGACGGGGACAAGAGCGTTTACGGCGGGAAGGGAGTTCTTAACGCCGTTAGGAACATCAACGAGGTCTTGGCTCCCAAACTCGTTGGCGTCGACGTTAGGAATCAAGCTGATGTGGATGCTATTATGCTGGAAATTGATGGAACTCCTAACAAATCAAAACTAGGGGCTAATGCAATATTGGGAGTTTCACTGAGTGTATGTAGAGCTGGTGCAGGGGCAAAGGGAGTTCCCTTGTACAAGCACATCCAGGAGATTTCAGGAACAAAGGAACTTGTTATGCCAGTTCCAGCTTTCAATGTTATAAATGGGGGAAGTCATGCTGGGAATAATCTGGCTATGCAAGAATTTATGATACTACCAGTTGGAGCCACTTCATTTGCTGAGGCATTCCGCATGGGCAGTGAAGTTTATCATGTATTAAAGGGAATAATCAAGGCAAAATATGGACAAGATGCATGTAATGTTGGAGATGAAGGAGGATTTGCTCCCAATGTTCAAGATAACAGGGAGGGGCTTGTCTTACTCATGGATGCTATTGAGAAAGCTGGTTATACTGGCAAGATTAAAATAGGCATGGATGTTGCAGCTTCAGAGTTTTACACTAAGGATGGGAAGTATGATTTGAACTTCAAGAAACAACCAAATGATGGAGCTCATGTTCACTCTGCCCAGAGTCTTGGTCAACTATATAAAGATTTTGTGAAAGAATTTCCCATTGTGTCAATTGAGGATCCATTTGATCAAGATGATTGGGGTTCATGGGCTTCACTTCTCTCTTCAGTTGATATTCAACTTGTAGGAGATGATTTGTTAGTTACAAATCCCAAGAGAATAGCTGAGGCCATCCAAAAGAAGGCTTGCAATGGTTTGCTTCTAAAGGTTAACCAAATTGGTACAGTGACTGAATCTATTCAGGCTGCACTTGACTCAAAGGCTGCAGGTTGGGGTGTCATGGTTAGTCATCGGAGTGGTGAAACTGAGGATAACTTCATTGCTGATCTCTCTGTTGGCTTGGCCAGTGGACAGATAAAGACTGGTGCTCCTTGCCGAAGTGAGCGATTGGCAAAGTATAATCAGTTATATTCATTATTTGGGCTTGAAATGGACTTGTCAAGATAA
>Glyma06g23081.1 sequence type=predicted peptide gene model=Glyma06g23081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALNLTHQPAIKAPSSSSFAASRPLRAPQSVPLRSPQRSLAVRAAATESPAPAVTAVRECKVKSVKARQIVDSRGNPTVEVDLVANGLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVRNINEVLAPKLVGVDVRNQADVDAIMLEIDGTPNKSKLGANAILGVSLSVCRAGAGAKGVPLYKHIQEISGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAFRMGSEVYHVLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYTGKIKIGMDVAASEFYTKDGKYDLNFKKQPNDGAHVHSAQSLGQLYKDFVKEFPIVSIEDPFDQDDWGSWASLLSSVDIQLVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGSVQYAGEAFRSP* >Glyma06g23081.2 sequence type=predicted peptide gene model=Glyma06g23081 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALNLTHQPAIKAPSSSSFAASRPLRAPQSVPLRSPQRSLAVRAAATESPAPAVTAVRECKVKSVKARQIVDSRGNPTVEVDLVANGLFRSAVPSGASTGIYEALELRDGDKSVYGGKGVLNAVRNINEVLAPKLVGVDVRNQADVDAIMLEIDGTPNKSKLGANAILGVSLSVCRAGAGAKGVPLYKHIQEISGTKELVMPVPAFNVINGGSHAGNNLAMQEFMILPVGATSFAEAFRMGSEVYHVLKGIIKAKYGQDACNVGDEGGFAPNVQDNREGLVLLMDAIEKAGYTGKIKIGMDVAASEFYTKDGKYDLNFKKQPNDGAHVHSAQSLGQLYKDFVKEFPIVSIEDPFDQDDWGSWASLLSSVDIQLVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLYSLFGLEMDLSR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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