Glyma06g22900 - SoyBase

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Report for Sequence Feature Glyma06g22900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	19815198
stop:	19816118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g22900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09690	AT	Annotation by Michelle Graham. TAIR10: Translation protein SH3-like family protein \| chr1:3136407-3137430 REVERSE LENGTH=164	SoyBase	E_val: 1.00E-85	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0022625	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
KOG1732	KOG	60S ribosomal protein L21	JGI		ISS
PTHR20981	Panther	60S RIBOSOMAL PROTEIN L21	JGI		ISS
PF01157	PFAM	Ribosomal protein L21e	JGI		ISS
UniRef100_G8A186	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L21 n=1 Tax=Medicago truncatula RepID=G8A186_MEDTR	SoyBase	E_val: 2.00E-92	ISS
UniRef100_UPI000233975E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233975E related cluster n=1 Tax=unknown RepID=UPI000233975E	SoyBase	E_val: 3.00E-107	ISS

Expression Patterns of Glyma06g22900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g22900 not represented in the dataset	Glyma06g22900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g22900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g207400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g22900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g22900

Limit To All Plant Sequences

>Glyma06g22900.1   sequence type=CDS   gene model=Glyma06g22900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGGCTGGTCACGGTTTGAGATCCCGCACTAGAGATTCCTTCTCTCGTCCCTTCAGGAAGAAGGGTACCATCACCCTCACCACATACCTCAGAACCTACCACGTTGACGATTATGTCAACGGAATTGCACACAAGTTATACCATGGCTGCACCGGTCGCGTTTGGAATGCCACCAAACATGCTGTTGGGGTCGAAGTCAATAAGCAGGTCGGCAACAGAATCATAAGGAAGAGGATTCACGTGCGTGTGGAGCATGTTATGCCATCGAGGTGCACTGAGGAGTTCCGCCTTAGGAAAATCAAGAATGATCAGCTCAAGGCTGAGGTCAAGGCCAAGGGTGAGAAGATCAGCACCAAGAGACAGCCTCAGGGTCCCAAACCTGGTTTCATGGTCGAGGGGGCAACGTTGGAGACAGTTACCCCTATTCCCTATGATGTCGTCAATGACCTCAAGGGAGGTTATTAG

Predicted protein sequences of Glyma06g22900

Limit To All Plant Sequences

>Glyma06g22900.1   sequence type=predicted peptide   gene model=Glyma06g22900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSAGHGLRSRTRDSFSRPFRKKGTITLTTYLRTYHVDDYVNGIAHKLYHGCTGRVWNATKHAVGVEVNKQVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEVKAKGEKISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGY*

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