Glyma06g22850 - SoyBase

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Report for Sequence Feature Glyma06g22850

Feature Type:	gene_model
Chromosome:	Gm06
Start:	19733320
stop:	19736247
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g22850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18485	AT	Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein \| chr1:6363172-6366084 FORWARD LENGTH=970	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
PTHR24015	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24015:SF133	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01535	PFAM	PPR repeat	JGI		ISS
UniRef100_G7ISZ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7ISZ5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338EC2	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338EC2 related cluster n=1 Tax=unknown RepID=UPI0002338EC2	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g22850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g22850

Paralog	Evidence	Comments
Glyma04g31201	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g22850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g206900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g22850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g22850

Limit To All Plant Sequences

>Glyma06g22850.1   sequence type=CDS   gene model=Glyma06g22850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCTGTGGCGGCACCACCTGTCTCATGCCAGCACTATCACAAACTCACCTTTCATAACAGAAACACTTGGACACGTAACCACAACAACAGCAACAACCTTTTTCCTCCATTTACGGTTCCAAAATCTTCCCTAACTTCTCACACAAAAACACACTCACCCATTCTCCAACGCCTTCACAATCTCTGCGACTCCGGAAACCTCAACGATGCCCTCAACTTGCTCCACTCACACGCCCAAAACGGCACCGTTTCCTCTTCCGACATTTCAAAAGAAGCTATTGGCATCTTACTAAGAGCATGCGGACACCACAAAAACATCCATGTTGGGCGAAAAGTGCACGCTCTTGTCTCCGCGTCGCATAAACTCCGCAACGACGTCGTTCTCAGCACCCGCATTATCGCCATGTACTCCGCGTGTGGGTCCCCTTCGGACTCTCGCGGCGTCTTCGACGCCGCGAAGGAAAAGGACCTGTTCCTCTACAACGCGCTCCTCAGCGGCTACTCCCGCAACGCGCTTTTCCGCGACGCGATTTCACTGTTCCTCGAGCTGCTCTCGGCGACGGACCTCGCGCCGGACAACTTCACGCTCCCCTGCGTGGCGAAGGCCTGCGCGGGTGTCGCGGACGTGGAGCTCGGGGAGGCGGTCCACGCGCTCGCGTTGAAGGCTGGTGGTTTCTCCGACGCGTTTGTGGGGAACGCGCTGATCGCCATGTATGGGAAATGTGGGTTCGTGGAAAGTGCTGTCAAGGTGTTTGAAACAATGCGGAATAGAAACTTGGTTTCGTGGAACTCGGTGATGTATGCGTGTTCGGAGAATGGGGGTTTTGGAGAGTGTTGTGGTGTTTTTAAGAGACTGTTGATCAGTGAGGAAGAAGGTTTGGTGCCTGATGTTGCGACGATGGTGACGGTGATTCCTGCGTGTGCTGCAGTTGGGGAAGTGAGAATGGGAATGGTTGTTCATGGTTTGGCTTTTAAATTGGGGATTACTGAGGAAGTGACGGTGAATAATTCGCTCGTGGACATGTATTCGAAATGCGGTTACTTGGGGGAGGCACGAGCTTTGTTTGATATGAATGGTGGGAAGAATGTTGTTTCTTGGAATACTATAATTTGGGGATACTCGAAGGAAGGAGATTTTCGTGGAGTGTTTGAGTTGCTGCAAGAGATGCAGAGGGAAGAGAAGGTGAGAGTGAATGAGGTGACGGTGTTGAACGTTCTGCCAGCTTGTTCAGGAGAGCATCAGCTGCTGAGTTTGAAGGAAATTCATGGTTATGCTTTTAGGCATGGATTTCTGAAGGATGAATTGGTGGCCAATGCTTTTGTTGCTGCCTACGCAAAATGCAGTTCCCTGGATTGCGCTGAGCGTGTCTTCTGTGGTATGGAAGGAAAAACAGTGAGCTCTTGGAATGCACTGATCGGCGCCCATGCACAAAATGGTTTTCCTGGGAAGTCTTTGGATCTGTTCCTTGTGATGATGGATTCTGGGATGGATCCTGATCGGTTTACTATTGGTAGCCTTCTTTTAGCTTGTGCGCGTTTGAAATTCCTACGTTGTGGCAAAGAGATTCATGGTTTTATGTTGCGTAATGGTTTAGAATTGGATGAATTTATTGGGATATCGTTGATGTCACTTTATATTCAGTGCAGCAGTATGTTACTAGGGAAGTTAATTTTTGATAAGATGGAAAACAAAAGTTTAGTATGCTGGAATGTGATGATTACTGGCTTTTCACAGAATGAACTTCCTTGTGAGGCCCTTGATACATTTCGTCAAATGCTATCGGGTGGAATTAAGCCTCAAGAGATTGCTGTAACAGGTGTTCTGGGGGCTTGTTCGCAGGTGTCGGCATTGCGGCTGGGGAAAGAAGTTCACTCCTTTGCACTTAAAGCTCATCTCTCTGAGGATGCCTTTGTTACTTGTGCATTAATAGACATGTATGCTAAATGTGGATGCATGGAACAATCTCAGAACATTTTTGACAGGGTAAACGAGAAGGATGAAGCAGTATGGAATGTTATAATTGCAGGATATGGGATTCATGGGCATGGGCTGAAGGCTATTGAGCTGTTTGAATTGATGCAAAATAAAGGCGGCAGACCAGATTCTTTTACATTTCTGGGAGTGCTAATTGCCTGTAACCATGCTGGCTTAGTAACGGAAGGATTAAAATATCTTGGTCAGATGCAGAATTTGTATGGCGTAAAGCCAAAGTTAGAGCATTATGCATGTGTGGTGGATATGCTTGGCCGAGCAGGGCAACTGACTGAAGCTTTAAAGCTTGTAAATGAGATGCCAGACGAACCAGATTCAGGGATATGGAGTTCATTGCTCAGTTCTTGTAGGAATTATGGGGATTTGGAAATTGGAGAGGAAGTTTCCAAAAAGTTATTAGAGTTGGAACCAAATAAAGCAGAGAATTATGTATTGCTGTCAAACTTGTATGCTGGATTAGGAAAATGGGATGAGGTGAGAAAGGTACGGCAGAGAATGAAGGAGAATGGCCTTCATAAAGATGCAGGCTGCAGTTGGATTGAAATAGGAGGAATGGTTTATAGATTTCTTGTTAGTGATGGATCACTTTCAGAATCAAAAAAGATTCAGCAGACCTGGATTAAATTGGAGAAAAAAATAAGCAAAATTGGATATAAACCTGACACAAGTTGTGTGCTTCATGAACTGGAAGAAGAGGGAAAGATTAAGATACTTAAGAGCCACAGCGAGAAGCTTGCAATTTCTTTTGGTCTGTTAAATACGGCTAAAGGTACAACGTTGAGGGTTTGCAAAAATCTACGCATATGTGTAGACTGTCACAATGCAATTAAATTAGTCTCAAAGGTTGTTAAAAGGGATATTATTGTAAGGGACAACAAGCGCTTTCATCATTTCAAAAACGGATTGTGTACCTGTGGAGATTTCTGGTAG

Predicted protein sequences of Glyma06g22850

Limit To All Plant Sequences

>Glyma06g22850.1   sequence type=predicted peptide   gene model=Glyma06g22850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVAAPPVSCQHYHKLTFHNRNTWTRNHNNSNNLFPPFTVPKSSLTSHTKTHSPILQRLHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW*

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