SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G08130 | AT | Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:2606655-2608652 REVERSE LENGTH=409 | SoyBase | E_val: 1.00E-24 | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009855 | GO-bp | Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry | SoyBase | N/A | ISS |
| GO:0009944 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis | SoyBase | N/A | ISS |
| GO:0010072 | GO-bp | Annotation by Michelle Graham. GO Biological Process: primary shoot apical meristem specification | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| PTHR12565 | Panther | STEROL REGULATORY ELEMENT-BINDING PROTEIN | JGI | ISS | |
| PTHR12565:SF27 | Panther | CENTROMERE-BINDING PROTEIN 1 | JGI | ISS | |
| PF00010 | PFAM | Helix-loop-helix DNA-binding domain | JGI | ISS | |
| UniRef100_B9RLH8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor BIM1, putative n=1 Tax=Ricinus communis RepID=B9RLH8_RICCO | SoyBase | E_val: 4.00E-35 | ISS |
| UniRef100_I1MT98 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1MT98_SOYBN | SoyBase | E_val: 4.00E-59 | ISS |
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Glyma06g22790 not represented in the dataset |
Glyma06g22790 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g206300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g22790.1 sequence type=CDS gene model=Glyma06g22790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTCCAAATGCTAAGAGAGCTAATTCCGCACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTATTGGAGGTCATTGAGTATATTCATTTTTTACAAGAGAAGGTGCACAAGTATGAAGGTTCATTTCAAGGGTGGAGAAACGAGCAAGAAAAATTGATGCCATGGAAGAAAAATAATGACAAGCCAGCAGAAAGTTTTCAACCTTGTGGCACCGATAATGGGTCAAGCTCATCTTCAGCACTATTGTTTGCTTCAATGGTTGACGAGAAAAATATCACCATCTCCCGAACAATTCCTCCGAGTACCCAAAATGTAGAATCTGGCTTGGGCACAATTTAA
>Glyma06g22790.1 sequence type=predicted peptide gene model=Glyma06g22790 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high FQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWRNEQEKLMPWKKNNDKPAESFQPCGTDNGSSSSSALLFASMVDEKNITISRTIPPSTQNVESGLGTI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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