Glyma06g22771 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma06g22771): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma06g22771): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma06g22771

Feature Type:	gene_model
Chromosome:	Gm06
Start:	19553135
stop:	19558213
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g22771

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI000233A94B	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A94B related cluster n=1 Tax=unknown RepID=UPI000233A94B	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g22771

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g22771 not represented in the dataset	Glyma06g22771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g22771

Paralog	Evidence	Comments
Glyma04g31711	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g22771 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g206200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g22771

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g22771

Limit To All Plant Sequences

>Glyma06g22771.2   sequence type=transcript   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAGAAGAGAGTGATGACACAGAAAAGAAGAGAGGGCAGAGGGGTAAACTCATTGAACGAAACCTTCCTCCTTGGGCAACAATCTCTTATGGAAAGTTAATTAATGGCTATAAAAATATCAAAATTACAAAATTTTCTAATACATGTACCTACACATTTACTCACTGAAATGAATCACCATCATTATTCAGTTTAAAGCATCACGTTCAAGAAAAATACACACCCTTTTACCAAGAAAAATACACACCCCACAAAAAAAAAAATCATATATTTAAAACTCATAAAAGTTTCATTTTACTTTTTGTTGTTATCATGCGAATTTCTTGGTCACCAAACAGCAAGAGCGTGTCTCAGAGGAATGGACAGAAGAACCATAAGAAACCACGAAACGCATGACATGTATGAAGCATGCTAGAGGATATACAAGCAATATCTATGTTGTTGGAAAATCTGGCTGTTTGGTGTTTGTTTTAAGGATATTAATTATTTTGAACCGTCCATTTAATGTTTTCCACTTTTTTTAATTTCTGTTTTTTTTTTCTACTAATTACCGTTTCTATTGAAACTAGTGAGGCCATAACTCTGCGTTTTCTTTCTAGCGGCTAGTAACTGGAGTTGCAAATGATCCATAAGGCATAAACCAAGCATGTGACTGATGATGCTGTGGAGAAAGTTTTGACTTTTGAGTTGTTTCGGAGACATCACATATTGTAGTGACAAGGTGATAATTTTGGCAAGATGAAAAATTCAAGAGGACGCAGCATGAAACATGCACATTTATTTCATTGTGAAGATCAAAGAAGTCAAGAACACAATAAAATTATAAGGGACAGACTGGAGAGTAATACTAATAATAGTTTTAGGACAAGGGAGATTCCAATAAAGAGGTTGTTCAACGTAGGGCATTTTACTAATGCTTCAGGAGACTTGTCAAGGTATAGCAAGGGAAAGAACTTTTCTGCAGGAATAAATGTCATGGACTATGATATACCTGAGCTTGTTGTTTTTATTCAAGAGGAACATCAGCAATTTGTCAAGGATACTTGCATTGGTAAGGGAGTGTCACCAGAAGGCAAGTGTATGTCAGAAGATTGTGCAGTAAATCATGATCCAATGTCATGTCACTTTGAGAATGACTTGAACACCAGAAGAGATTCAAATCTAAGAACTATGGAAGCAATGTCAATCAATTCAAATGGGCCAGAGTATGAATCTAAACCTCTTACCCTTAAGGATGCCATGGAATTTTATGATTCAAGAGGTTTAGTGATGGATGGTGAAGAGGATTCAGGATACAATATTTCAATTGACCACCTCACAAAGAAGACAATACCAGAGACCATTAGAGAGGCATTAACAAAGGAAGCAGAATTTTCAAGATCTTTCAAGAATTGGCAAATAAATTCATTTTTGGGTACAATTGGCAGCAGAGTGGAGTTTCCAAGTTGTTCAGATTGTGTACAAGTTGCTGACACAATCATGTGTAGATCTGAGATTGCTAACTCACACAGTCCATCAGGTTCAGGCAAAAGACAAGAAAATGATCCTCAAGAGACTACTTGTTCCTGTGATGTAGGCCCATCACCATATGCTGCTCCTGCAACAACATCTAGCAGTGCCTCTCATCACTCTAATGATAGCATAAGCAGTACTCATTCATTTGCTTTTCCCATATTACCTGCAGAATGGAATGGAAGTCCAGAGAGAATGTTGGAAGCTAATAAAAGTCAATTCAGAAAAGACAGATGGCAGAAGATAAGGGTTTTGTTTTCCTGCTGCAAAGTTGATTGCTAATATTTTGCAGTTTAGCTGGCATTGAGGATTATTCAGAAAAAAGCTACTATATGCCGTTTACTTACTTTCATGGTGTTATAAATATAGAATATATGTGACCATATCAAATTATTTTTGGCATCTACATTTTGATGACTCATTAGTTAAAGACTCTATATGTGTTTGTTTTTATTATTTATTTATTTATACCCCCTTCTTTTATATTGTAATATAATACAACCAAGTGTGAAAATTTCTCTCCAAAATGTGATTATAGTTAAGATAT

>Glyma06g22771.3   sequence type=transcript   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCATTATTCAGTTTAAAGCATCACGTTCAAGAAAAATACACACCCTTTTACCAAGAAAAATACACACCCCACAAAAAAAAAAATCATATATTTAAAACTCATAAAAGTTTCATTTTACTTTTTGTTGTTATCATGCGAATTTCTTGGTCACCAAACAGCAAGAGCGTGTCTCAGAGGAATGGACAGAAGAACCATAAGAAACCACGAAACGCATGACATTGAGGCCATAACTCTGCGTTTTCTTTCTAGCGGCTAGTAACTGGAGTTGCAAATGATCCATAAGGCATAAACCAAGCATGTGACTGATGATGCTGTGGAGAAAGTTTTGACTTTTGAGTTGTTTCGGAGACATCACATATTGTAGTGACAAGGTGATAATTTTGGCAAGATGAAAAATTCAAGAGGACGCAGCATGAAACATGCACATTTATTTCATTGTGAAGATCAAAGAAGTCAAGAACACAATAAAATTATAAGGGACAGACTGGAGAGTAATACTAATAATAGTTTTAGGACAAGGGAGATTCCAATAAAGAGGTTGTTCAACGTAGGGCATTTTACTAATGCTTCAGGAGACTTGTCAAGGTATAGCAAGGGAAAGAACTTTTCTGCAGGAATAAATGTCATGGACTATGATATACCTGAGCTTGTTGTTTTTATTCAAGAGGAACATCAGCAATTTGTCAAGGATACTTGCATTGGTAAGGGAGTGTCACCAGAAGGCAAGTGTATGTCAGAAGATTGTGCAGTAAATCATGATCCAATGTCATGTCACTTTGAGAATGACTTGAACACCAGAAGAGATTCAAATCTAAGAACTATGGAAGCAATGTCAATCAATTCAAATGGGCCAGAGTATGAATCTAAACCTCTTACCCTTAAGGATGCCATGGAATTTTATGATTCAAGAGGTTTAGTGATGGATGGTGAAGAGGATTCAGGATACAATATTTCAATTGACCACCTCACAAAGAAGACAATACCAGAGACCATTAGAGAGGCATTAACAAAGGAAGCAGAATTTTCAAGATCTTTCAAGAATTGGCAAATAAATTCATTTTTGGGTACAATTGGCAGCAGAGTGGAGTTTCCAAGTTGTTCAGATTGTGTACAAGTTGCTGACACAATCATGTGTAGATCTGAGATTGCTAACTCACACAGTCCATCAGGTTCAGGCAAAAGACAAGAAAATGATCCTCAAGAGACTACTTGTTCCTGTGATGTAGGCCCATCACCATATGCTGCTCCTGCAACAACATCTAGCAGTGCCTCTCATCACTCTAATGATAGCATAAGCAGTACTCATTCATTTGCTTTTCCCATATTACCTGCAGAATGGAATGGAAGTCCAGAGAGAATGTTGGAAGCTAATAAAAGTCAATTCAGAAAAGACAGATGGCAGAAGATAAGGGTTTTGTTTTCCTGCTGCAAAGTTGATTGCTAATATTTTGCAGTTTAGCTGGCATTGAGGATTATTCAGAAAAAAGCTACTATATGCCGTTTACTTACTTTCATGGTGTTATAAATATAGAATATATGTGACCATATCAAATTATTTTTGGCATCTACATTTTGATGACTCATTAGTTAAAGACTCTATATGTGTTTGTTTTTATTATTTATTTATTTATACCCCCTTCTTTTATATTGTAATATAATACAACCAAGTGTGAAAATTTCTCTCCAAAATGTGATTATAGTTAAGATAT

Coding sequences of Glyma06g22771

Limit To All Plant Sequences

>Glyma06g22771.1   sequence type=CDS   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAATTCAAGAGGACGCAGCATGAAACATGCACATTTATTTCATTGTGAAGATCAAAGAAGTCAAGAACACAATAAAATTATAAGGGACAGACTGGAGAGTAATACTAATAATAGTTTTAGGACAAGGGAGATTCCAATAAAGAGGTTGTTCAACGTAGGGCATTTTACTAATGCTTCAGGAGACTTGTCAAGGTATAGCAAGGGAAAGAACTTTTCTGCAGGAATAAATGTCATGGACTATGATATACCTGAGCTTGTTGTTTTTATTCAAGAGGAACATCAGCAATTTGTCAAGGATACTTGCATTGGTAAGGGAGTGTCACCAGAAGGCAAGTGTATGTCAGAAGATTGTGCAGTAAATCATGATCCAATGTCATGTCACTTTGAGAATGACTTGAACACCAGAAGAGATTCAAATCTAAGAACTATGGAAGCAATGTCAATCAATTCAAATGGGCCAGAGTATGAATCTAAACCTCTTACCCTTAAGGATGCCATGGAATTTTATGATTCAAGAGGTTTAGTGATGGATGGTGAAGAGGATTCAGGATACAATATTTCAATTGACCACCTCACAAAGAAGACAATACCAGAGACCATTAGAGAGGCATTAACAAAGGAAGCAGAATTTTCAAGATCTTTCAAGAATTGGCAAATAAATTCATTTTTGGGTACAATTGGCAGCAGAGTGGAGTTTCCAAGTTGTTCAGATTGTGTACAAGTTGCTGACACAATCATGTGTAGATCTGAGATTGCTAACTCACACAGTCCATCAGGTTCAGGCAAAAGACAAGAAAATGATCCTCAAGAGACTACTTGTTCCTGTGATGTAGGCCCATCACCATATGCTGCTCCTGCAACAACATCTAGCAGTGCCTCTCATCACTCTAATGATAGCATAAGCAGTACTCATTCATTTGCTTTTCCCATATTACCTGCAGAATGGAATGGAAGTCCAGAGAGAATGTTGGAAGCTAATAAAAGTCAATTCAGAAAAGACAGATGGCAGAAGATAAGGGTTTTGTTTTCCTGCTGCAAAGTTGATTGCTAA

>Glyma06g22771.2   sequence type=CDS   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAATTCAAGAGGACGCAGCATGAAACATGCACATTTATTTCATTGTGAAGATCAAAGAAGTCAAGAACACAATAAAATTATAAGGGACAGACTGGAGAGTAATACTAATAATAGTTTTAGGACAAGGGAGATTCCAATAAAGAGGTTGTTCAACGTAGGGCATTTTACTAATGCTTCAGGAGACTTGTCAAGGTATAGCAAGGGAAAGAACTTTTCTGCAGGAATAAATGTCATGGACTATGATATACCTGAGCTTGTTGTTTTTATTCAAGAGGAACATCAGCAATTTGTCAAGGATACTTGCATTGGTAAGGGAGTGTCACCAGAAGGCAAGTGTATGTCAGAAGATTGTGCAGTAAATCATGATCCAATGTCATGTCACTTTGAGAATGACTTGAACACCAGAAGAGATTCAAATCTAAGAACTATGGAAGCAATGTCAATCAATTCAAATGGGCCAGAGTATGAATCTAAACCTCTTACCCTTAAGGATGCCATGGAATTTTATGATTCAAGAGGTTTAGTGATGGATGGTGAAGAGGATTCAGGATACAATATTTCAATTGACCACCTCACAAAGAAGACAATACCAGAGACCATTAGAGAGGCATTAACAAAGGAAGCAGAATTTTCAAGATCTTTCAAGAATTGGCAAATAAATTCATTTTTGGGTACAATTGGCAGCAGAGTGGAGTTTCCAAGTTGTTCAGATTGTGTACAAGTTGCTGACACAATCATGTGTAGATCTGAGATTGCTAACTCACACAGTCCATCAGGTTCAGGCAAAAGACAAGAAAATGATCCTCAAGAGACTACTTGTTCCTGTGATGTAGGCCCATCACCATATGCTGCTCCTGCAACAACATCTAGCAGTGCCTCTCATCACTCTAATGATAGCATAAGCAGTACTCATTCATTTGCTTTTCCCATATTACCTGCAGAATGGAATGGAAGTCCAGAGAGAATGTTGGAAGCTAATAAAAGTCAATTCAGAAAAGACAGATGGCAGAAGATAAGGGTTTTGTTTTCCTGCTGCAAAGTTGATTGCTAA

>Glyma06g22771.3   sequence type=CDS   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAATTCAAGAGGACGCAGCATGAAACATGCACATTTATTTCATTGTGAAGATCAAAGAAGTCAAGAACACAATAAAATTATAAGGGACAGACTGGAGAGTAATACTAATAATAGTTTTAGGACAAGGGAGATTCCAATAAAGAGGTTGTTCAACGTAGGGCATTTTACTAATGCTTCAGGAGACTTGTCAAGGTATAGCAAGGGAAAGAACTTTTCTGCAGGAATAAATGTCATGGACTATGATATACCTGAGCTTGTTGTTTTTATTCAAGAGGAACATCAGCAATTTGTCAAGGATACTTGCATTGGTAAGGGAGTGTCACCAGAAGGCAAGTGTATGTCAGAAGATTGTGCAGTAAATCATGATCCAATGTCATGTCACTTTGAGAATGACTTGAACACCAGAAGAGATTCAAATCTAAGAACTATGGAAGCAATGTCAATCAATTCAAATGGGCCAGAGTATGAATCTAAACCTCTTACCCTTAAGGATGCCATGGAATTTTATGATTCAAGAGGTTTAGTGATGGATGGTGAAGAGGATTCAGGATACAATATTTCAATTGACCACCTCACAAAGAAGACAATACCAGAGACCATTAGAGAGGCATTAACAAAGGAAGCAGAATTTTCAAGATCTTTCAAGAATTGGCAAATAAATTCATTTTTGGGTACAATTGGCAGCAGAGTGGAGTTTCCAAGTTGTTCAGATTGTGTACAAGTTGCTGACACAATCATGTGTAGATCTGAGATTGCTAACTCACACAGTCCATCAGGTTCAGGCAAAAGACAAGAAAATGATCCTCAAGAGACTACTTGTTCCTGTGATGTAGGCCCATCACCATATGCTGCTCCTGCAACAACATCTAGCAGTGCCTCTCATCACTCTAATGATAGCATAAGCAGTACTCATTCATTTGCTTTTCCCATATTACCTGCAGAATGGAATGGAAGTCCAGAGAGAATGTTGGAAGCTAATAAAAGTCAATTCAGAAAAGACAGATGGCAGAAGATAAGGGTTTTGTTTTCCTGCTGCAAAGTTGATTGCTAA

Predicted protein sequences of Glyma06g22771

Limit To All Plant Sequences

>Glyma06g22771.1   sequence type=predicted peptide   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNSRGRSMKHAHLFHCEDQRSQEHNKIIRDRLESNTNNSFRTREIPIKRLFNVGHFTNASGDLSRYSKGKNFSAGINVMDYDIPELVVFIQEEHQQFVKDTCIGKGVSPEGKCMSEDCAVNHDPMSCHFENDLNTRRDSNLRTMEAMSINSNGPEYESKPLTLKDAMEFYDSRGLVMDGEEDSGYNISIDHLTKKTIPETIREALTKEAEFSRSFKNWQINSFLGTIGSRVEFPSCSDCVQVADTIMCRSEIANSHSPSGSGKRQENDPQETTCSCDVGPSPYAAPATTSSSASHHSNDSISSTHSFAFPILPAEWNGSPERMLEANKSQFRKDRWQKIRVLFSCCKVDC*

>Glyma06g22771.2   sequence type=predicted peptide   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNSRGRSMKHAHLFHCEDQRSQEHNKIIRDRLESNTNNSFRTREIPIKRLFNVGHFTNASGDLSRYSKGKNFSAGINVMDYDIPELVVFIQEEHQQFVKDTCIGKGVSPEGKCMSEDCAVNHDPMSCHFENDLNTRRDSNLRTMEAMSINSNGPEYESKPLTLKDAMEFYDSRGLVMDGEEDSGYNISIDHLTKKTIPETIREALTKEAEFSRSFKNWQINSFLGTIGSRVEFPSCSDCVQVADTIMCRSEIANSHSPSGSGKRQENDPQETTCSCDVGPSPYAAPATTSSSASHHSNDSISSTHSFAFPILPAEWNGSPERMLEANKSQFRKDRWQKIRVLFSCCKVDC*

>Glyma06g22771.3   sequence type=predicted peptide   gene model=Glyma06g22771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNSRGRSMKHAHLFHCEDQRSQEHNKIIRDRLESNTNNSFRTREIPIKRLFNVGHFTNASGDLSRYSKGKNFSAGINVMDYDIPELVVFIQEEHQQFVKDTCIGKGVSPEGKCMSEDCAVNHDPMSCHFENDLNTRRDSNLRTMEAMSINSNGPEYESKPLTLKDAMEFYDSRGLVMDGEEDSGYNISIDHLTKKTIPETIREALTKEAEFSRSFKNWQINSFLGTIGSRVEFPSCSDCVQVADTIMCRSEIANSHSPSGSGKRQENDPQETTCSCDVGPSPYAAPATTSSSASHHSNDSISSTHSFAFPILPAEWNGSPERMLEANKSQFRKDRWQKIRVLFSCCKVDC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain