Glyma06g22410 - SoyBase

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Report for Sequence Feature Glyma06g22410

Feature Type:	gene_model
Chromosome:	Gm06
Start:	19209095
stop:	19212936
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g22410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G60920	AT	Annotation by Michelle Graham. TAIR10: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family \| chr5:24511466-24513932 REVERSE LENGTH=456	SoyBase	E_val: 0	ISS
GO:0000271	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process	SoyBase	N/A	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006096	GO-bp	Annotation by Michelle Graham. GO Biological Process: glycolysis	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0006833	GO-bp	Annotation by Michelle Graham. GO Biological Process: water transport	SoyBase	N/A	ISS
GO:0006972	GO-bp	Annotation by Michelle Graham. GO Biological Process: hyperosmotic response	SoyBase	N/A	ISS
GO:0007030	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi organization	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0008361	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell size	SoyBase	N/A	ISS
GO:0009266	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0009825	GO-bp	Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0009932	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell tip growth	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0010215	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose microfibril organization	SoyBase	N/A	ISS
GO:0010817	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels	SoyBase	N/A	ISS
GO:0016049	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell growth	SoyBase	N/A	ISS
GO:0030243	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose metabolic process	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0043481	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0048767	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair elongation	SoyBase	N/A	ISS
GO:0071555	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall organization	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0009897	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: external side of plasma membrane	SoyBase	N/A	ISS
GO:0009930	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: longitudinal side of cell surface	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0046658	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04833	PFAM	COBRA-like protein	JGI		ISS
UniRef100_I1KD34	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD34_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q69F98	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phytochelatin synthetase-like protein n=1 Tax=Phaseolus vulgaris RepID=Q69F98_PHAVU	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g22410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g22410 not represented in the dataset	Glyma06g22410 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g22410

Paralog	Evidence	Comments
Glyma04g32130	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g22410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g205400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g22410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g22410

Limit To All Plant Sequences

>Glyma06g22410.2   sequence type=transcript   gene model=Glyma06g22410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTAATCACTAAATGATAGACACCAAACTCTAAAAATAAATTAACCTTATTGGACACAAAAAAACCAACTCTCAATAAAGGGCATTATTGATATTTGGTGTTGAACATCTCTAGCAGATCTTCCCACTGGTTTTGCTTACACAATAAAGTCACTGACTACATGGAAGTTTCATAACACTCAGTTCATTTCGAAACCAAAGCTTCTGCTTTTGTGATGGAACTAGAGAGCTGAGAGGCCTAAACCTCTGTTTGCTCTCTCACCCTTTTTGGTGCAGATCTTGAACTTGAGCTGCATTTTCATAGAAAACCAGCACCAAGAAATGGAACATACCATGTTACCTGCCATTGGATCTGTTTTCCCTCGTGGTGTCTTTGCCGCACTCTTGCTCATGTTACTGTTTTCTTTCTCCACATTCACTTCTATAGAAGCCTATGATCCACTTGATCCTACCGGAAATATAACAATCAAGTGGGATGTCATTAGCTGGACTCCAGATGGCTATGTTGCTGTTGTCACAATGTACAACTTTCAACAATATCGCCACATTCAGGCCCCCGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAGCCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGCATTCCACATTGTTGTAAGAAGGACCCTACAGTTGTGGATTTACTGCCAGGGACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCCTAAATTCATGGGGTCAGGACCCCAGCAATGCAGTAAGTTCTTTCCAGATTAGTGTTGGTTCTGCCGGAACAACAAACAAAACCGTCAAAATGCCTAAAAATTTTACCCTCAAAGCACCGGGACCTGGCTATACTTGTGGTCCTGCCAAAGTTGTGAAACCAACTGTATTTATTACCAATGACAAGAGGAGAACCACCCAAGCCATGATGACCTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGGCACCAAGTTGCTGTGTTTCCCTCTCATCCTTCTATAATGACACAGTAGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGATCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGCAAACACGCCACTAGTCCAGTGTACCAGCCATATGTGTCCTATTCGAGTGCATTGGCATGTGAAGCTCAATTACAAAGAGTACTGGAGGGTCAAGATCACAATCACAAATTTCAATTACAGAATGAACTACTCTCAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAAATCCCTATGAGGGCTTGAGTAAGTTCTATCTTTCATAGCCACAATCCTAGATGATCTTGTGAAGAAAATACCACAATTCTTATGTTATTGATTTGCAATATGGTTTTACAGATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGATCTCTTGGTAATGTTCAGTCAGAAATCTTACTTAGAAAAGACAAATCAACCTTCACATTTGATAAGGGATGGGCCTTCCCTAGAAGAATTTATTTCAATGGGGATAACTGTGTTATGCCTCCTCCAGATGCCTACCCCTGGCTTCCAAATGCAAGTTCTAAACTAGTTTTCTCTTTACTCAGTACAGTCATAGCCACTTTAGCTTCTTTGTTAATCTTATTGAATCAATCATAGAAAATATAAAGATGCCATCTACTCTTTCGGAGTATTGTACCTTTCTCTTCTGCACCAGCTTGTTAAAGCTGAAGTCAACCCCATTGTCAAGAATGCATAGAAGCTGCTACTGAAGCAATAAAAAGTGCCACAGATGCATGAATGCATGCCACAAGAATTCTGTCCTTATTCACCTTGGGGATAGAATTTTACCCCCCATATATGTAACACATCTTTTTAGCCTGAGTTGTATAATTATTTTAAATTACTCAATTGGATGATTATACTTTTAAGATTATAGAATATCCAATTTATTTTTTTACCGTTAAGATCATGAATCCAAGAAGAAATTCTAGGTAGCACTTCTGCTGCTTCTGAAGTCATTTGTTAATCAAATATATACCCATTTCCCATTTTGGCAATCCCA

Coding sequences of Glyma06g22410

Limit To All Plant Sequences

>Glyma06g22410.1   sequence type=CDS   gene model=Glyma06g22410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACATACCATGTTACCTGCCATTGGATCTGTTTTCCCTCGTGGTGTCTTTGCCGCACTCTTGCTCATGTTACTGTTTTCTTTCTCCACATTCACTTCTATAGAAGCCTATGATCCACTTGATCCTACCGGAAATATAACAATCAAGTGGGATGTCATTAGCTGGACTCCAGATGGCTATGTTGCTGTTGTCACAATGTACAACTTTCAACAATATCGCCACATTCAGGCCCCCGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAGCCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGCATTCCACATTGTTGTAAGAAGGACCCTACAGTTGTGGATTTACTGCCAGGGACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCCTAAATTCATGGGGTCAGGACCCCAGCAATGCAGTAAGTTCTTTCCAGATTAGTGTTGGTTCTGCCGGAACAACAAACAAAACCGTCAAAATGCCTAAAAATTTTACCCTCAAAGCACCGGGACCTGGCTATACTTGTGGTCCTGCCAAAGTTGTGAAACCAACTGTATTTATTACCAATGACAAGAGGAGAACCACCCAAGCCATGATGACCTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGGCACCAAGTTGCTGTGTTTCCCTCTCATCCTTCTATAATGACACAGTAGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGATCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGCAAACACGCCACTAGTCCAGTGTACCAGCCATATGTGTCCTATTCGAGTGCATTGGCATGTGAAGCTCAATTACAAAGAGTACTGGAGGGTCAAGATCACAATCACAAATTTCAATTACAGAATGAACTACTCTCAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAAATCCCTATGAGGGCTTGAATGATACAAGTATGCTGTGGGGAGTCAAGTTCTACAATGATTTTCTTTCTTCAGCTGGATCTCTTGGTAATGTTCAGTCAGAAATCTTACTTAGAAAAGACAAATCAACCTTCACATTTGATAAGGGATGGGCCTTCCCTAGAAGAATTTATTTCAATGGGGATAACTGTGTTATGCCTCCTCCAGATGCCTACCCCTGGCTTCCAAATGCAAGTTCTAAACTAGTTTTCTCTTTACTCAGTACAGTCATAGCCACTTTAGCTTCTTTGTTAATCTTATTGAATCAATCATAG

>Glyma06g22410.2   sequence type=CDS   gene model=Glyma06g22410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACATACCATGTTACCTGCCATTGGATCTGTTTTCCCTCGTGGTGTCTTTGCCGCACTCTTGCTCATGTTACTGTTTTCTTTCTCCACATTCACTTCTATAGAAGCCTATGATCCACTTGATCCTACCGGAAATATAACAATCAAGTGGGATGTCATTAGCTGGACTCCAGATGGCTATGTTGCTGTTGTCACAATGTACAACTTTCAACAATATCGCCACATTCAGGCCCCCGGATGGTCATTAGGGTGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAGCCCAAACCACAGAGCAAGGGGACTGTTCAAAGTTCAAAGCAGGCATTCCACATTGTTGTAAGAAGGACCCTACAGTTGTGGATTTACTGCCAGGGACTCCTTACAACCAGCAGATTGCAAATTGTTGCAAAGGGGGTGTCCTAAATTCATGGGGTCAGGACCCCAGCAATGCAGTAAGTTCTTTCCAGATTAGTGTTGGTTCTGCCGGAACAACAAACAAAACCGTCAAAATGCCTAAAAATTTTACCCTCAAAGCACCGGGACCTGGCTATACTTGTGGTCCTGCCAAAGTTGTGAAACCAACTGTATTTATTACCAATGACAAGAGGAGAACCACCCAAGCCATGATGACCTGGAATATTACCTGCACTTATTCTCAATTCCTGGCTCAAAAGGCACCAAGTTGCTGTGTTTCCCTCTCATCCTTCTATAATGACACAGTAGTAAACTGCCCAACCTGCACCTGTGGTTGCCGAAACAAAACAGAACCTGGCAGCTGTGTAGATCCAAATTCGCCACATTTAGCTTCAGTTGTATCAGCATCAGGCAAAACGGCAAACACGCCACTAGTCCAGTGTACCAGCCATATGTGTCCTATTCGAGTGCATTGGCATGTGAAGCTCAATTACAAAGAGTACTGGAGGGTCAAGATCACAATCACAAATTTCAATTACAGAATGAACTACTCTCAATGGAACCTTGTTGTGCAGCATCCTAATTTAGATAATATTACCCAGCTCTTCAGTTTTAATTACAAGTCACTAAATCCCTATGAGGGCTTGAGTAAGTTCTATCTTTCATAG

Predicted protein sequences of Glyma06g22410

Limit To All Plant Sequences

>Glyma06g22410.1   sequence type=predicted peptide   gene model=Glyma06g22410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHTMLPAIGSVFPRGVFAALLLMLLFSFSTFTSIEAYDPLDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWSLGWTWAKKEVIWNMMGAQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPSNAVSSFQISVGSAGTTNKTVKMPKNFTLKAPGPGYTCGPAKVVKPTVFITNDKRRTTQAMMTWNITCTYSQFLAQKAPSCCVSLSSFYNDTVVNCPTCTCGCRNKTEPGSCVDPNSPHLASVVSASGKTANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNLDNITQLFSFNYKSLNPYEGLNDTSMLWGVKFYNDFLSSAGSLGNVQSEILLRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWLPNASSKLVFSLLSTVIATLASLLILLNQS*

>Glyma06g22410.2   sequence type=predicted peptide   gene model=Glyma06g22410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHTMLPAIGSVFPRGVFAALLLMLLFSFSTFTSIEAYDPLDPTGNITIKWDVISWTPDGYVAVVTMYNFQQYRHIQAPGWSLGWTWAKKEVIWNMMGAQTTEQGDCSKFKAGIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWGQDPSNAVSSFQISVGSAGTTNKTVKMPKNFTLKAPGPGYTCGPAKVVKPTVFITNDKRRTTQAMMTWNITCTYSQFLAQKAPSCCVSLSSFYNDTVVNCPTCTCGCRNKTEPGSCVDPNSPHLASVVSASGKTANTPLVQCTSHMCPIRVHWHVKLNYKEYWRVKITITNFNYRMNYSQWNLVVQHPNLDNITQLFSFNYKSLNPYEGLSKFYLS*

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