Glyma06g22320 - SoyBase

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Report for Sequence Feature Glyma06g22320

Feature Type:	gene_model
Chromosome:	Gm06
Start:	19120391
stop:	19130172
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g22320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18610	AT	Annotation by Michelle Graham. TAIR10: Galactose oxidase/kelch repeat superfamily protein \| chr1:6405779-6408831 FORWARD LENGTH=556	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG0379	KOG	Kelch repeat-containing proteins	JGI		ISS
PTHR23244	Panther	KELCH REPEAT DOMAIN	JGI		ISS
PTHR23244:SF103	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
PF07646	PFAM	Kelch motif	JGI		ISS
UniRef100_B9RLL7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kelch repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RLL7_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KD29	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD29_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g22320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g22320

Paralog	Evidence	Comments
Glyma04g32230	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g22320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g204800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g22320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g22320

Limit To All Plant Sequences

>Glyma06g22320.2   sequence type=transcript   gene model=Glyma06g22320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAATCAGAATCAGATTCAGGAGGACTCACTCTTCAGTCTCTTCTCCTTGGATTAAAACTTGAAGAAAGAGAGGGAAAAGTTTGGTTCATTTTTTTTGTTTTGTTTAAAGATTTTGAAGACAAGAGAGAATGAGGTGGGAAAAGGTGGAGGGAATAGGAAGAGAAGAAGGACCAGGGAAGAGGTGGGGCCACACGTGTAACGCCGTTAAAGATGGCAGACTTCTTTATCTCTTCGGCGGTTACGGCAAATTTAACTGTCAGACCAACCAAGTTCACGTCTTCGATACTCTGAAGCAGAGTTGGAGTGAACCAGCAATTAAGGGGCCCCCACCTACTCCTAGAGACAGCCATAGTTGCACCGTTATTGGTGATAATCTGTTTGTGTTTGGGGGTACTGATGGGACCAAGCTACTGAATGATTTGCAGATACTAGATACTTCTTCAAATACATGGGTTTTTCCAACTGTGAGAGGGGAGGCACCGGATGCACGAGAGGGTCATGATGCAGCACTTGTTGGCAAACGACTATTTGTGTTTGGTGGTTGTGGGAAATCTGCTGATAATATTAATGAGGTGTACTACAATGACCTTTACATATTGAATACAGAATTGTTCGTTTGGAACCGTGCTACAACATCAGGCACTCCTCCATCTCCTCGTGATGGCCATACTTGCTCATCTTGGAGAAACAAAATTATTGTGATAGGTGGTGAAGATGAAAATGATTCTTATCTGTCTGATGTCCACATCCTAGATACTGATACTCTAATCTGGAGTAAACTGTGTACGTCAGGCCAATTGTTGCCACCTCGAGCTGGTCATTCTACAGTTTCTTTTGGCATGAACTTGTTTGTTTTTGGGGGCTTTACGGATGCTCACAACCTATACAACGACCTGTATATGCTCAACATTGAGACTTGTGTGTGGACGAAGGTGGCAACTACACCTAATGGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATATATGAGTGGTGTTCTTGTGTTTGTTGGTGGTTGTAATAGAAATCTGGAGGCCCTGGATGATATGTATTACCTATACACAGGGATTGCACGGGAAAATGAACAGCGACCAGAGAAGTTATCCTTAAAGAAGCAATTGAAGCGGAAATGTCTAGAACAAAATCCCAATCTTGTCCGAAACCCAGTTATGTGTGGATATGGAGTGGGTGCTGCCAGTAACCAGCCTATGGAAATCTTGAACTGTAGCCAACCAAGCAGACTAAATATCCCAGTAAATCAGTCCCTGCTTCCTGGAAAGAAAATGTTTCAAGCCCAAGTTAAGGAAAAAAACTCAGCAGGATATACTATTGAAACCGTTATTGATGGAAAGCCTCTTCATGGAGTTCTGTTTAAAAACCAGCCTAACACTCTTATTCCAGTTCCTAATACTTCCAGAAAAGGCCTGTCAGTGAAATTTTAAGTCCTGCTTCAAATGGTATACATTCACAAAATGTAACGGCTTATAAAGTGCTCGGGCAGGACAGAATGCAAGATAAACGGGAATTACGGGGAGAGAGTTCAGAATCTCATGAATGCCATAAGGATGCTGATACTATTGTTGTATCAAGTAACCCGACAACTGTTGCTGAGTCCTTTAAGGTTTCTGTCAACCCAGAACCAGAAGCTGTTTCTTTGAATCGAAATGGTGATGAAAAAAATGACACACCAAAATCCTTAATTGAGAGCTTGAAAAACGATGGATCCAATGATGTGACAAGTTCCAAAGGTGAAATTCAAATTGGTGTTCAAATAAATGTGCCAGTTTCCAACTATGAAATTCCAACTCAAATGAGTGATGCACCAAACTGTAATGCTGATGTCCTGAAACCTGCAGCAGCTGAGATTATTGTGTGTCTGCCAAATGAAGGTGTAACAGGGGATTGCACAACTCCAAGGACAGAAGGACACAATGAACAAGCAAAATTAACTTGAATTCAAGCGGTTGTGCATTCCTCTTCTGAAGGTGACAACAGATGCTCGTAAACAGTTTACTACAAACAAAAGTGCTAACTGGTGGGATATACGTATATTGTTACCTAGACAGGCATTGATCTTAAATTTGTTGAGAAAAACCATTATTACCTTAGGTGTAGGGGTAGTATTAGAATTTTTTGTCTGAAAGACTGAAACTAATGAGTTTTTCCGACATTAAACTTGTCTTTGCAAGGAAAAAAAAGATTTTGTTAAGAGGTTGACTGTAGTTGCCAACTTTTTATTTATTTTTTCCTTGTTTTGTGGGCATCACTACCTAGTGAGGTGGGAGATGATGATGTGAACATGTCTGTGTTGTGGTGTGAAGACGAAGCTGTGAGTGGTATGAACGATTTGGTTGGAAGGAAAAT

Coding sequences of Glyma06g22320

Limit To All Plant Sequences

>Glyma06g22320.1   sequence type=CDS   gene model=Glyma06g22320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTGGGAAAAGGTGGAGGGAATAGGAAGAGAAGAAGGACCAGGGAAGAGGTGGGGCCACACGTGTAACGCCGTTAAAGATGGCAGACTTCTTTATCTCTTCGGCGGTTACGGCAAATTTAACTGTCAGACCAACCAAGTTCACGTCTTCGATACTCTGAAGCAGAGTTGGAGTGAACCAGCAATTAAGGGGCCCCCACCTACTCCTAGAGACAGCCATAGTTGCACCGTTATTGGTGATAATCTGTTTGTGTTTGGGGGTACTGATGGGACCAAGCTACTGAATGATTTGCAGATACTAGATACTTCTTCAAATACATGGGTTTTTCCAACTGTGAGAGGGGAGGCACCGGATGCACGAGAGGGTCATGATGCAGCACTTGTTGGCAAACGACTATTTGTGTTTGGTGGTTGTGGGAAATCTGCTGATAATATTAATGAGGTGTACTACAATGACCTTTACATATTGAATACAGAATTGTTCGTTTGGAACCGTGCTACAACATCAGGCACTCCTCCATCTCCTCGTGATGGCCATACTTGCTCATCTTGGAGAAACAAAATTATTGTGATAGGTGGTGAAGATGAAAATGATTCTTATCTGTCTGATGTCCACATCCTAGATACTGATACTCTAATCTGGAGTAAACTGTGTACGTCAGGCCAATTGTTGCCACCTCGAGCTGGTCATTCTACAGTTTCTTTTGGCATGAACTTGTTTGTTTTTGGGGGCTTTACGGATGCTCACAACCTATACAACGACCTGTATATGCTCAACATTGAGACTTGTGTGTGGACGAAGGTGGCAACTACACCTAATGGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATATATGAGTGGTGTTCTTGTGTTTGTTGGTGGTTGTAATAGAAATCTGGAGGCCCTGGATGATATGTATTACCTATACACAGGGATTGCACGGGAAAATGAACAGCGACCAGAGAAGTTATCCTTAAAGAAGCAATTGAAGCGGAAATGTCTAGAACAAAATCCCAATCTTGTCCGAAACCCAGTTATGTGTGGATATGGAGTGGGTGCTGCCAGTAACCAGCCTATGGAAATCTTGAACTGTAGCCAACCAAGCAGACTAAATATCCCAGTAAATCAGTCCCTGCTTCCTGGAAAGAAAATGTTTCAAGCCCAAGTTAAGGAAAAAAACTCAGCAGGATATACTATTGAAACCGTTATTGATGGAAAGCCTCTTCATGGAGTTCTGTTTAAAAACCAGCCTAACACTCTTATTCCAGTTCCTAATACTTCCAGTAGGAAAAGGCCTGTCAGTGAAATTTTAAGTCCTGCTTCAAATGGTATACATTCACAAAATGTAACGGCTTATAAAGTGCTCGGGCAGGACAGAATGCAAGATAAACGGGAATTACGGGGAGAGAGTTCAGAATCTCATGAATGCCATAAGGATGCTGATACTATTGTTGTATCAAGTAACCCGACAACTGTTGCTGAGTCCTTTAAGGTTTCTGTCAACCCAGAACCAGAAGCTGTTTCTTTGAATCGAAATGGTGATGAAAAAAATGACACACCAAAATCCTTAATTGAGAGCTTGAAAAACGATGGATCCAATGATGTGACAAGTTCCAAAGGTGAAATTCAAATTGGTGTTCAAATAAATGTGCCAGTTTCCAACTATGAAATTCCAACTCAAATGAGTGATGCACCAAACTGTAATGCTGATGTCCTGAAACCTGCAGCAGCTGAGATTATTGTGTGTCTGCCAAATGAAGGTGTAACAGGGGATTGCACAACTCCAAGGACAGAAGGACACAATGAACAAGCAAAATTAACTTGA

>Glyma06g22320.2   sequence type=CDS   gene model=Glyma06g22320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGTGGGAAAAGGTGGAGGGAATAGGAAGAGAAGAAGGACCAGGGAAGAGGTGGGGCCACACGTGTAACGCCGTTAAAGATGGCAGACTTCTTTATCTCTTCGGCGGTTACGGCAAATTTAACTGTCAGACCAACCAAGTTCACGTCTTCGATACTCTGAAGCAGAGTTGGAGTGAACCAGCAATTAAGGGGCCCCCACCTACTCCTAGAGACAGCCATAGTTGCACCGTTATTGGTGATAATCTGTTTGTGTTTGGGGGTACTGATGGGACCAAGCTACTGAATGATTTGCAGATACTAGATACTTCTTCAAATACATGGGTTTTTCCAACTGTGAGAGGGGAGGCACCGGATGCACGAGAGGGTCATGATGCAGCACTTGTTGGCAAACGACTATTTGTGTTTGGTGGTTGTGGGAAATCTGCTGATAATATTAATGAGGTGTACTACAATGACCTTTACATATTGAATACAGAATTGTTCGTTTGGAACCGTGCTACAACATCAGGCACTCCTCCATCTCCTCGTGATGGCCATACTTGCTCATCTTGGAGAAACAAAATTATTGTGATAGGTGGTGAAGATGAAAATGATTCTTATCTGTCTGATGTCCACATCCTAGATACTGATACTCTAATCTGGAGTAAACTGTGTACGTCAGGCCAATTGTTGCCACCTCGAGCTGGTCATTCTACAGTTTCTTTTGGCATGAACTTGTTTGTTTTTGGGGGCTTTACGGATGCTCACAACCTATACAACGACCTGTATATGCTCAACATTGAGACTTGTGTGTGGACGAAGGTGGCAACTACACCTAATGGTCCTTCTGCTAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATATATGAGTGGTGTTCTTGTGTTTGTTGGTGGTTGTAATAGAAATCTGGAGGCCCTGGATGATATGTATTACCTATACACAGGGATTGCACGGGAAAATGAACAGCGACCAGAGAAGTTATCCTTAAAGAAGCAATTGAAGCGGAAATGTCTAGAACAAAATCCCAATCTTGTCCGAAACCCAGTTATGTGTGGATATGGAGTGGGTGCTGCCAGTAACCAGCCTATGGAAATCTTGAACTGTAGCCAACCAAGCAGACTAAATATCCCAGTAAATCAGTCCCTGCTTCCTGGAAAGAAAATGTTTCAAGCCCAAGTTAAGGAAAAAAACTCAGCAGGATATACTATTGAAACCGTTATTGATGGAAAGCCTCTTCATGGAGTTCTGTTTAAAAACCAGCCTAACACTCTTATTCCAGTTCCTAATACTTCCAGAAAAGGCCTGTCAGTGAAATTTTAA

Predicted protein sequences of Glyma06g22320

Limit To All Plant Sequences

>Glyma06g22320.1   sequence type=predicted peptide   gene model=Glyma06g22320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRWEKVEGIGREEGPGKRWGHTCNAVKDGRLLYLFGGYGKFNCQTNQVHVFDTLKQSWSEPAIKGPPPTPRDSHSCTVIGDNLFVFGGTDGTKLLNDLQILDTSSNTWVFPTVRGEAPDAREGHDAALVGKRLFVFGGCGKSADNINEVYYNDLYILNTELFVWNRATTSGTPPSPRDGHTCSSWRNKIIVIGGEDENDSYLSDVHILDTDTLIWSKLCTSGQLLPPRAGHSTVSFGMNLFVFGGFTDAHNLYNDLYMLNIETCVWTKVATTPNGPSARFSVAGDCLDPYMSGVLVFVGGCNRNLEALDDMYYLYTGIARENEQRPEKLSLKKQLKRKCLEQNPNLVRNPVMCGYGVGAASNQPMEILNCSQPSRLNIPVNQSLLPGKKMFQAQVKEKNSAGYTIETVIDGKPLHGVLFKNQPNTLIPVPNTSSRKRPVSEILSPASNGIHSQNVTAYKVLGQDRMQDKRELRGESSESHECHKDADTIVVSSNPTTVAESFKVSVNPEPEAVSLNRNGDEKNDTPKSLIESLKNDGSNDVTSSKGEIQIGVQINVPVSNYEIPTQMSDAPNCNADVLKPAAAEIIVCLPNEGVTGDCTTPRTEGHNEQAKLT*

>Glyma06g22320.2   sequence type=predicted peptide   gene model=Glyma06g22320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRWEKVEGIGREEGPGKRWGHTCNAVKDGRLLYLFGGYGKFNCQTNQVHVFDTLKQSWSEPAIKGPPPTPRDSHSCTVIGDNLFVFGGTDGTKLLNDLQILDTSSNTWVFPTVRGEAPDAREGHDAALVGKRLFVFGGCGKSADNINEVYYNDLYILNTELFVWNRATTSGTPPSPRDGHTCSSWRNKIIVIGGEDENDSYLSDVHILDTDTLIWSKLCTSGQLLPPRAGHSTVSFGMNLFVFGGFTDAHNLYNDLYMLNIETCVWTKVATTPNGPSARFSVAGDCLDPYMSGVLVFVGGCNRNLEALDDMYYLYTGIARENEQRPEKLSLKKQLKRKCLEQNPNLVRNPVMCGYGVGAASNQPMEILNCSQPSRLNIPVNQSLLPGKKMFQAQVKEKNSAGYTIETVIDGKPLHGVLFKNQPNTLIPVPNTSRKGLSVKF*

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