Glyma06g22193 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g22193

Feature Type:	gene_model
Chromosome:	Gm06
Start:	18946310
stop:	18950487
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g22193

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G74220	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G03630.1); Has 383 Blast hits to 347 proteins in 86 species: Archae - 0; Bacteria - 17; Metazoa - 87; Fungi - 65; Plants - 76; Viruses - 2; Other Eukaryotes - 136 (source: N	SoyBase	E_val: 2.00E-16	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1KD18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD18_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g22193

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g22193 not represented in the dataset	Glyma06g22193 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g22193

Paralog	Evidence	Comments
Glyma04g32401	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g22193 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g204000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g22193

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g22193

Limit To All Plant Sequences

>Glyma06g22193.1   sequence type=CDS   gene model=Glyma06g22193   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCCATAAGTAACAGTGGATCTAGTGTTGATATGAGAACTGGTCCTACTACAAAGTCAGGTGAAGGAGAACAATTTAACAAAGAAAAGAAACAAGTACCCTCCTCTTCACCCTTTTCATCAGAGTTGAAATCACAAGATCACTTTGACCTTATGCCAAATGCAACAACCACTACAACTCATCCTAGACCTCTAGGTGCAACCTCTCCTACACATGACAAAACTTACTCACAGTCTGAATTGCATAACACACATTTAGTGGCAGAAAATGGTGATGGAAGGCCAGTTAACAGCCATGTGGAAGCACATTCTTCTAACCCTTTTGGCGAAGCTAATCCTTCTCCCTTAGAAAACAACACAGCCCCCTCTACATCGTCACAAAACCCCTTCATAGAGATGAGTGATGCCACCACCAACACTAAACATGTTGGTGCATCTGAATCTGAAAAGGAGCATGACCATCTACATTCATTGCCTTCCATGCAACAAGAAAAAGGTGGCATGCCTAACAATAGTGTAAGTGCATTTCCCACTGATGGTATGCTAGGCCCCCATTCATCATTGGCACCATCCACAAATGAATCATCACAAGGGAATCCCTTCAAAGCGCCACCAACAAGTGAAACCAATAAGAACACTTTTGTTGGTTCAGCTGACTCGGTGAAAGTTGATGAACATCATGATCATGGCAATGAATCACATCATAGACTACCATCACCGGAGCAAGGTCATTGGAGCGTGCCTAGTAGCGAAGCAAGGACACATCCTGCTAACACACATGGTGAAACTCATGTTCCCTCTTCGAGCCAACAATTAGACCCCTTGTTGGAATCAGCACAAAACAAACACCAAGCTGATGCAACTTCTAAGGACCATGCAGGTTCTACTACTATCCCAACAAGTGTTGAACCCCATCATACCTTTTCAGTTACAGAGCAAGGACATCACAACAAGGACAGTAGCAATTCAGAAATAGATAACAAGTCAGACTCATCAGTTTCATCATTTTCCCCAGCTTCTGAATCTTCAACTCAAGACCACATGCATAATTCTGCAAATGCAGTCACTAAAGCACCTCAAAAAAGGGGAAAGGATGTTAGGTTTGCTTCAGAATCTTGTAATGATGATATCCCAATTAGCTCTTTCCAAAAACATGGACAACAAACTAGTGATGGTGAAGGACAAAACTCATCAACAGGTGTTGCTCTTGGCACAAGCAATGGCTCAGAAAAGCAAAATCCTCCACTACAGATAATGGAGCGACCAGAAAATCCTACAACTTCTTCGAACTATAGGTTTCCATCACATGTGTTTGATAGACACAAATCAAAATCAAACACCCAATGGAGCACTGCCTCTAATGAATCATTGTTCAGCATTCAAATGGGAAATACAAGTTTCTCGAATGACATGGGTTGGAGTTGGATGAGCAAATCTGGTGAAATGGATAGACCTGGTGACGCGATCTCGCCTGGCGTATTTCCTCCAAGCAATCAGCCCCCACTCCCACCTCAATCCCCACCCCAACCTCAACCTCAACCTCCAGCTACAAAATTCAGTGATATCAGCCAAAGCACTGCAAAACAACATAAAGGTTCAAGAGTGACTGAACTAAAAGCTGCTGAGACAATGAGAGAGGTTATAATGGAAAACAGTATAAGTAAAGGGGATTTGATACCTGCTGGAGGGGCAACACCTTCCAATATGCGTTCTACTTCTAATGCCCATTCTCACAAATCAGATGGGAGCACCAAATCCTTTGCGTTTAATGTATTGGCAGATGGAGAAAAACCTCTTTCGGCAAAGCATGGTGAAGAGAAGAGAAAGCAGCAGAAACAGCCAGAGCAGCAGGATATTAGACCAGCACCAGATGCAGCACCTCAGAACCCCAAGCCAATCCCAAATGCTCCTCAGAACAAATCATGGTTTTCTTGCTTCTCATGTTGTTAA

Predicted protein sequences of Glyma06g22193

Limit To All Plant Sequences

>Glyma06g22193.1   sequence type=predicted peptide   gene model=Glyma06g22193   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESISNSGSSVDMRTGPTTKSGEGEQFNKEKKQVPSSSPFSSELKSQDHFDLMPNATTTTTHPRPLGATSPTHDKTYSQSELHNTHLVAENGDGRPVNSHVEAHSSNPFGEANPSPLENNTAPSTSSQNPFIEMSDATTNTKHVGASESEKEHDHLHSLPSMQQEKGGMPNNSVSAFPTDGMLGPHSSLAPSTNESSQGNPFKAPPTSETNKNTFVGSADSVKVDEHHDHGNESHHRLPSPEQGHWSVPSSEARTHPANTHGETHVPSSSQQLDPLLESAQNKHQADATSKDHAGSTTIPTSVEPHHTFSVTEQGHHNKDSSNSEIDNKSDSSVSSFSPASESSTQDHMHNSANAVTKAPQKRGKDVRFASESCNDDIPISSFQKHGQQTSDGEGQNSSTGVALGTSNGSEKQNPPLQIMERPENPTTSSNYRFPSHVFDRHKSKSNTQWSTASNESLFSIQMGNTSFSNDMGWSWMSKSGEMDRPGDAISPGVFPPSNQPPLPPQSPPQPQPQPPATKFSDISQSTAKQHKGSRVTELKAAETMREVIMENSISKGDLIPAGGATPSNMRSTSNAHSHKSDGSTKSFAFNVLADGEKPLSAKHGEEKRKQQKQPEQQDIRPAPDAAPQNPKPIPNAPQNKSWFSCFSCC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain