Glyma06g22160 - SoyBase

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Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g22160

Feature Type:	gene_model
Chromosome:	Gm06
Start:	18912836
stop:	18915769
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g22160

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61010	AT	Annotation by Michelle Graham. TAIR10: exocyst subunit exo70 family protein E2 \| chr5:24554612-24556531 FORWARD LENGTH=639	SoyBase	E_val: 4.00E-172	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006887	GO-bp	Annotation by Michelle Graham. GO Biological Process: exocytosis	SoyBase	N/A	ISS
GO:0006904	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle docking involved in exocytosis	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009697	GO-bp	Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process	SoyBase	N/A	ISS
GO:0000145	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: exocyst	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0070062	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular vesicular exosome	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG2344	KOG	Exocyst component protein and related proteins	JGI		ISS
PTHR12542	Panther	EXOCYST COMPLEX PROTEIN EXO70-RELATED	JGI		ISS
PTHR12542:SF7	Panther	EXOCYST COMPLEX PROTEIN EXO70	JGI		ISS
PF03081	PFAM	Exo70 exocyst complex subunit	JGI		ISS
UniRef100_G7IZB2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Exocyst complex component n=1 Tax=Medicago truncatula RepID=G7IZB2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KD17	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KD17_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g22160

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g22160

Paralog	Evidence	Comments
Glyma04g32420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g22160 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g203900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g22160

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g22160

Limit To All Plant Sequences

>Glyma06g22160.3   sequence type=transcript   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTCGTTAAATACTAGTGGCATGTCCGTCAAAAGTCAAAAGCCACATATTGATGAAATTGTGTTGTTAGAATAATTAATTAATTACTTGCAGAGCAAATCTCCTCCACAATTTTTCTTTTTTTCTCTACCCAGGAGACTTCCTTTCAACTCAGATACTCTTTGATTCTCTTCAGGAAAACATCAACTAATTAAAATCTAATTTTGTCTTTGATACTCTTTGTCCGCGGAATTCACCACCCCCACCTTCTCAATTTGTTTGCTTTCTGCTTTCTTACCTCTTTTTTCTCAGATTTCATTTGGTTGATCCTTTCTTCAATTCTTCTTCTGGTTTTGTAGTTGTTTTTTTATCTGACTTGTGTTTCTAAAATCCATGAACCGTATGTGATTTCCAGTGTCTTTTTCTTTTTCCAGATTCCAGAAGAGAAAAAAGAAAAAAAATCCTTTTGTTTGTGTGAGACTGTAAGGATCAATTGGTTGAGTTCGCCATTTCTTGTGGCAGTTTTGTTTGAGTTTTTTGAGTTTGGAGGTTGTGTTTGGTGTTGGTGGATTACGTATTTGATTTTCATCCCTTTTTCTTCCATTAGTTGGGACTTGTTCTGGCTACTTTGTATTTCAGGGTTCAAACTTTAAGGTTTAAATCCACTTATTGTTCCTTTGAGGACCAAAAAGCATATTCTTCATTCTTACAAGCTACAACTTTTTTAACCTTTTCTTGTTTAAAGCAGTTCTGTGTGGATTTCTTCTTGCTCTTTACATTCTTTGCTGAGATGGAAGAAAATAAATCTGTGATTTCCACCTGTGAGCAAGATCAACATGTGGTTGCTGCTGCTCAGCACATTTTGAAGGCACTAGCAGCAAGTAAGACTGTATCTGAAGACTTGAGAAAAACCCTATTGGATCTTGAGACACAATTGTCTTCAATTTCCATAGTCAATGAGAGAAAACGAACAGGAATCAAGCAATTTGAGAGGCAGCTTAAGTGTGTTGAAGACAAGGTAATGAAATGGGAGACAAACCCTTCTTCCAATGAGTCTTGTGAGTATTTGAAAGTTGTTGGTGAAATCCAAACACTGATCCAGAGTTTGGAAAACTTTTCTGTGAATGAAAAGGGGAAGCCTAAGGAACTTCTAAGGAGGGCCAATGAAATTCTGCAGGTTGCTATGCCAAGCCTTGAGAAAGAACTAGTCCACATTCTTGTCCAACATAAGCAATACTTTGAGCCTGAATACATGTCTTTCCATTCTAATAGAATGGATATTGTTTATGATGAATCGTTTCGTTTGGTCGAGGAAGAACAAATCAACGAGGCCTCCCGAAGTAGTAGCGGTGCTAGCCGCCAATCTGAGGCCAGCACTATTGATTTGGTGAATCCAACAGTGCTTCAACATCTCAAGAGCATTGCTAGTTTCATGTTTGGTTCAAAATACCATCAGGAGTTCTGTCAGGTCTTTGTTACATCGAGGAGGGATGCTTTAGCTGAGTATCTTGTCATTCTTGAGATGGAAAAGTTAAGAATTGAGGATGTGATAAAACTGGAGTGGCATTGCTTGAACAACGAGATAAAGAAATGGATTCGAGCCATGAAGATCATTGTTCGGGTGTACCTCGTCAGTGAGAAACGATTGTGTGAGCAAATCCTTGGTGATTTTGGATCCTTTTATCAATGCTGCTTTTCTGAAATTTCTCAGAGTTTCATGCTGCATCTCTTGAATTTTGGTGAGGCCGTGGCAATGGGAACACACACACCAGAAAAAATTTTTCGGTTACTTGACATGTATGAGGTTTTGGAGCATCTTGCTGTGGATGTAGATATTTTGTTCTTTGAAGAAGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCGAAGGAGCTTTGGTGAATCTGTTAAGTCTACATTTGTAGCATTCAGAAATGCTATTGCATCCAACCACTCAAAGACACCTTTTCCTCAAGGGGGTGTTCACCATGTTACCAAATATGTCATGAATTACATCATGACACTAGGTGAATATGGTGACACCCTTAATCTCCTTCTTGTTGATGAAAGTTCAATTGATCCTGCAGGCAACAACAACAACAAACCTGACTTACCATGTCTCTCATTGTGTCCAACGGCTTGTCAATTTCGCTCAATCACCGCAACTCTAGAATCCAACTTGAGCAACAAGTCCAAGTTATACAAAGACAAGGCCTTGCAACATGTTTTCATGATGAACAACATTCATTACATGGTGCAAAAAGTTAAGTGTTCTGGCCTAAGTCATTTCTTTGGCGATCGCTGGCTTCGCCAGCACACTGCGATGTACCAGCGCGATGCACGGTGTTATGAGATGGTCTCTTGGGGATCATTGCTATCCATGCTCAAGGAAGATAGTGTGTCAAATTGTGTCTCACGGAGAACTCTTGAGAAAAAGTGCAAAGAGTTCTGCACTGCTTTTGGTGAAGTTTACAGGGTTCAGACAGAGTGGTTCATCTCAGATCTTCTACTTCGCGAGGATCTACAAATTTCAGTGTCTCAGAAAGTTGTTCCTGCATACCGCACATACACTGGGAAAAACTCATATAACATTGCTGAGAAGTATATCAAGTACAGTGTAGATGATCTACAAAGTTATATTTTGGACCTTTTTCAAGGGTCACCAAAATCTTTGCACAAGTGAAAGGGTCTTGAATTCTTGAGTTTCATTCTTTACTTAGATCATTGTATATATTGCTTGTAATTTGGCATAGTGACACCATGGTCTTAGTTTATTAGCTTAGGGAGACTGTTATGTACTTGTTCTCCTTTGTCATCAAGTTAATAAATGAATATGATCTTAC

Coding sequences of Glyma06g22160

Limit To All Plant Sequences

>Glyma06g22160.2   sequence type=CDS   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAATAAATCTGTGATTTCCACCTGTGAGCAAGATCAACATGTGGTTGCTGCTGCTCAGCACATTTTGAAGGCACTAGCAGCAAGTAAGACTGTATCTGAAGACTTGAGAAAAACCCTATTGGATCTTGAGACACAATTGTCTTCAATTTCCATAGTCAATGAGAGAAAACGAACAGGAATCAAGCAATTTGAGAGGCAGCTTAAGTGTGTTGAAGACAAGGTAATGAAATGGGAGACAAACCCTTCTTCCAATGAGTCTTGTGAGTATTTGAAAGTTGTTGGTGAAATCCAAACACTGATCCAGAGTTTGGAAAACTTTTCTGTGAATGAAAAGGGGAAGCCTAAGGAACTTCTAAGGAGGGCCAATGAAATTCTGCAGGTTGCTATGCCAAGCCTTGAGAAAGAACTAGTCCACATTCTTGTCCAACATAAGCAATACTTTGAGCCTGAATACATGTCTTTCCATTCTAATAGAATGGATATTGTTTATGATGAATCGTTTCGTTTGGTCGAGGAAGAACAAATCAACGAGGCCTCCCGAAGTAGTAGCGGTGCTAGCCGCCAATCTGAGGCCAGCACTATTGATTTGGTGAATCCAACAGTGCTTCAACATCTCAAGAGCATTGCTAGTTTCATGTTTGGTTCAAAATACCATCAGGAGTTCTGTCAGGTCTTTGTTACATCGAGGAGGGATGCTTTAGCTGAGTATCTTGTCATTCTTGAGATGGAAAAGTTAAGAATTGAGGATGTGATAAAACTGGAGTGGCATTGCTTGAACAACGAGATAAAGAAATGGATTCGAGCCATGAAGATCATTGTTCGGGTGTACCTCGTCAGTGAGAAACGATTGTGTGAGCAAATCCTTGGTGATTTTGGATCCTTTTATCAATGCTGCTTTTCTGAAATTTCTCAGAGTTTCATGCTGCATCTCTTGAATTTTGGTGAGGCCGTGGCAATGGGAACACACACACCAGAAAAAATTTTTCGGTTACTTGACATGTATGAGGTTTTGGAGCATCTTGCTGTGGATGTAGATATTTTGTTCTTTGAAGAAGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCGAAGGAGCTTTGGTGAATCTGTTAAGTCTACATTTGTAGCATTCAGAAATGCTATTGCATCCAACCACTCAAAGACACCTTTTCCTCAAGGGGGTGTTCACCATGTTACCAAATATGTCATGAATTACATCATGACACTAGGTGAATATGGTGACACCCTTAATCTCCTTCTTGTTGATGAAAGTTCAATTGATCCTGCAGGCAACAACAACAACAAACCTGACTTACCATGTCTCTCATTGTGTCCAACGGCTTGTCAATTTCGCTCAATCACCGCAACTCTAGAATCCAACTTGAGCAACAAGTCCAAGTTATACAAAGACAAGGCCTTGCAACATGTTTTCATGATGAACAACATTCATTACATGGTGCAAAAAGTTAAGTGTTCTGGCCTAAGTCATTTCTTTGGCGATCGCTGGCTTCGCCAGCACACTGCGATGTACCAGCGCGATGCACGGTGTTATGAGATGGTCTCTTGGGGATCATTGCTATCCATGCTCAAGGAAGATAGTGTGTCAAATTGTGTCTCACGGAGAACTCTTGAGAAAAAGTGCAAAGAGTTCTGCACTGCTTTTGGTGAAGTTTACAGGGTTCAGACAGAGTGGTTCATCTCAGATCTTCTACTTCGCGAGGATCTACAAATTTCAGTGTCTCAGAAAGTTGTTCCTGCATACCGCACATACACTGGGAAAAACTCATATAACATTGCTGAGAAGTATATCAAGTACAGTGTAGATGATCTACAAAGTTATATTTTGGACCTTTTTCAAGGGTCACCAAAATCTTTGCACAAGTGA

>Glyma06g22160.3   sequence type=CDS   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAAATAAATCTGTGATTTCCACCTGTGAGCAAGATCAACATGTGGTTGCTGCTGCTCAGCACATTTTGAAGGCACTAGCAGCAAGTAAGACTGTATCTGAAGACTTGAGAAAAACCCTATTGGATCTTGAGACACAATTGTCTTCAATTTCCATAGTCAATGAGAGAAAACGAACAGGAATCAAGCAATTTGAGAGGCAGCTTAAGTGTGTTGAAGACAAGGTAATGAAATGGGAGACAAACCCTTCTTCCAATGAGTCTTGTGAGTATTTGAAAGTTGTTGGTGAAATCCAAACACTGATCCAGAGTTTGGAAAACTTTTCTGTGAATGAAAAGGGGAAGCCTAAGGAACTTCTAAGGAGGGCCAATGAAATTCTGCAGGTTGCTATGCCAAGCCTTGAGAAAGAACTAGTCCACATTCTTGTCCAACATAAGCAATACTTTGAGCCTGAATACATGTCTTTCCATTCTAATAGAATGGATATTGTTTATGATGAATCGTTTCGTTTGGTCGAGGAAGAACAAATCAACGAGGCCTCCCGAAGTAGTAGCGGTGCTAGCCGCCAATCTGAGGCCAGCACTATTGATTTGGTGAATCCAACAGTGCTTCAACATCTCAAGAGCATTGCTAGTTTCATGTTTGGTTCAAAATACCATCAGGAGTTCTGTCAGGTCTTTGTTACATCGAGGAGGGATGCTTTAGCTGAGTATCTTGTCATTCTTGAGATGGAAAAGTTAAGAATTGAGGATGTGATAAAACTGGAGTGGCATTGCTTGAACAACGAGATAAAGAAATGGATTCGAGCCATGAAGATCATTGTTCGGGTGTACCTCGTCAGTGAGAAACGATTGTGTGAGCAAATCCTTGGTGATTTTGGATCCTTTTATCAATGCTGCTTTTCTGAAATTTCTCAGAGTTTCATGCTGCATCTCTTGAATTTTGGTGAGGCCGTGGCAATGGGAACACACACACCAGAAAAAATTTTTCGGTTACTTGACATGTATGAGGTTTTGGAGCATCTTGCTGTGGATGTAGATATTTTGTTCTTTGAAGAAGTTGGTTCTTTTGTTAGGGGAGAGTTTCACAAGCTTCGAAGGAGCTTTGGTGAATCTGTTAAGTCTACATTTGTAGCATTCAGAAATGCTATTGCATCCAACCACTCAAAGACACCTTTTCCTCAAGGGGGTGTTCACCATGTTACCAAATATGTCATGAATTACATCATGACACTAGGTGAATATGGTGACACCCTTAATCTCCTTCTTGTTGATGAAAGTTCAATTGATCCTGCAGGCAACAACAACAACAAACCTGACTTACCATGTCTCTCATTGTGTCCAACGGCTTGTCAATTTCGCTCAATCACCGCAACTCTAGAATCCAACTTGAGCAACAAGTCCAAGTTATACAAAGACAAGGCCTTGCAACATGTTTTCATGATGAACAACATTCATTACATGGTGCAAAAAGTTAAGTGTTCTGGCCTAAGTCATTTCTTTGGCGATCGCTGGCTTCGCCAGCACACTGCGATGTACCAGCGCGATGCACGGTGTTATGAGATGGTCTCTTGGGGATCATTGCTATCCATGCTCAAGGAAGATAGTGTGTCAAATTGTGTCTCACGGAGAACTCTTGAGAAAAAGTGCAAAGAGTTCTGCACTGCTTTTGGTGAAGTTTACAGGGTTCAGACAGAGTGGTTCATCTCAGATCTTCTACTTCGCGAGGATCTACAAATTTCAGTGTCTCAGAAAGTTGTTCCTGCATACCGCACATACACTGGGAAAAACTCATATAACATTGCTGAGAAGTATATCAAGTACAGTGTAGATGATCTACAAAGTTATATTTTGGACCTTTTTCAAGGGTCACCAAAATCTTTGCACAAGTGA

Predicted protein sequences of Glyma06g22160

Limit To All Plant Sequences

>Glyma06g22160.2   sequence type=predicted peptide   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEENKSVISTCEQDQHVVAAAQHILKALAASKTVSEDLRKTLLDLETQLSSISIVNERKRTGIKQFERQLKCVEDKVMKWETNPSSNESCEYLKVVGEIQTLIQSLENFSVNEKGKPKELLRRANEILQVAMPSLEKELVHILVQHKQYFEPEYMSFHSNRMDIVYDESFRLVEEEQINEASRSSSGASRQSEASTIDLVNPTVLQHLKSIASFMFGSKYHQEFCQVFVTSRRDALAEYLVILEMEKLRIEDVIKLEWHCLNNEIKKWIRAMKIIVRVYLVSEKRLCEQILGDFGSFYQCCFSEISQSFMLHLLNFGEAVAMGTHTPEKIFRLLDMYEVLEHLAVDVDILFFEEVGSFVRGEFHKLRRSFGESVKSTFVAFRNAIASNHSKTPFPQGGVHHVTKYVMNYIMTLGEYGDTLNLLLVDESSIDPAGNNNNKPDLPCLSLCPTACQFRSITATLESNLSNKSKLYKDKALQHVFMMNNIHYMVQKVKCSGLSHFFGDRWLRQHTAMYQRDARCYEMVSWGSLLSMLKEDSVSNCVSRRTLEKKCKEFCTAFGEVYRVQTEWFISDLLLREDLQISVSQKVVPAYRTYTGKNSYNIAEKYIKYSVDDLQSYILDLFQGSPKSLHK*

>Glyma06g22160.3   sequence type=predicted peptide   gene model=Glyma06g22160   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEENKSVISTCEQDQHVVAAAQHILKALAASKTVSEDLRKTLLDLETQLSSISIVNERKRTGIKQFERQLKCVEDKVMKWETNPSSNESCEYLKVVGEIQTLIQSLENFSVNEKGKPKELLRRANEILQVAMPSLEKELVHILVQHKQYFEPEYMSFHSNRMDIVYDESFRLVEEEQINEASRSSSGASRQSEASTIDLVNPTVLQHLKSIASFMFGSKYHQEFCQVFVTSRRDALAEYLVILEMEKLRIEDVIKLEWHCLNNEIKKWIRAMKIIVRVYLVSEKRLCEQILGDFGSFYQCCFSEISQSFMLHLLNFGEAVAMGTHTPEKIFRLLDMYEVLEHLAVDVDILFFEEVGSFVRGEFHKLRRSFGESVKSTFVAFRNAIASNHSKTPFPQGGVHHVTKYVMNYIMTLGEYGDTLNLLLVDESSIDPAGNNNNKPDLPCLSLCPTACQFRSITATLESNLSNKSKLYKDKALQHVFMMNNIHYMVQKVKCSGLSHFFGDRWLRQHTAMYQRDARCYEMVSWGSLLSMLKEDSVSNCVSRRTLEKKCKEFCTAFGEVYRVQTEWFISDLLLREDLQISVSQKVVPAYRTYTGKNSYNIAEKYIKYSVDDLQSYILDLFQGSPKSLHK*

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