SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16820 | AT | Annotation by Michelle Graham. TAIR10: vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related | chr1:5757199-5758464 REVERSE LENGTH=93 | SoyBase | E_val: 4.00E-12 | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| UniRef100_G7IDF4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Protein kinase-like protein n=1 Tax=Medicago truncatula RepID=G7IDF4_MEDTR | SoyBase | E_val: 4.00E-18 | ISS |
| UniRef100_G7IDF4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein kinase-like protein n=1 Tax=Medicago truncatula RepID=G7IDF4_MEDTR | SoyBase | E_val: 4.00E-18 | ISS |
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Glyma06g22095 not represented in the dataset |
Glyma06g22095 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g203600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g22095.1 sequence type=CDS gene model=Glyma06g22095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGGCTTTTTAGAATGAACAATCATGTCTTCAGAAGTGAAAATCTTGAGCACAAAACACAAGCTACTGTAATAGACCCTCTCCCTCAAAAAATAAATTTAATATCGTGTGAACCAATGGTCCACATATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGCTTTGTACAATGTAA
>Glyma06g22095.1 sequence type=predicted peptide gene model=Glyma06g22095 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MRLFRMNNHVFRSENLEHKTQATVIDPLPQKINLISCEPMVHISDIKLIRTDTTLDLSQKAEKGMLCTM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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