SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G61140 | AT | Annotation by Michelle Graham. TAIR10: U5 small nuclear ribonucleoprotein helicase | chr5:24589999-24603311 FORWARD LENGTH=2157 | SoyBase | E_val: 0 | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0004386 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: helicase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008026 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent helicase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0952 | KOG | DNA/RNA helicase MER3/SLH1, DEAD-box superfamily | JGI | ISS | |
| PTHR11752 | Panther | HELICASE SKI2W | JGI | ISS | |
| PTHR11752:SF8 | Panther | U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASE | JGI | ISS | |
| PF00270 | PFAM | DEAD/DEAH box helicase | JGI | ISS | |
| PF00271 | PFAM | Helicase conserved C-terminal domain | JGI | ISS | |
| PF02889 | PFAM | Sec63 Brl domain | JGI | ISS | |
| UniRef100_B9RLP5 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Activating signal cointegrator 1 complex subunit 3, helc1, putative n=1 Tax=Ricinus communis RepID=B9RLP5_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_B9RLP5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Activating signal cointegrator 1 complex subunit 3, helc1, putative n=1 Tax=Ricinus communis RepID=B9RLP5_RICCO | SoyBase | E_val: 0 | ISS |
|
Glyma06g21945 not represented in the dataset |
Glyma06g21945 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g202500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g21945.1 sequence type=CDS gene model=Glyma06g21945 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTTGTTTCAGATTCCTCGCCTCACCAACTCTCTCAGAGATCCCTTCGACGTGGACCAGTACTATCTTCATCGCAAAACCATTCTCCACAACCAAAAACCTAGCAATTCCGCAAGTTCACTCGATGAATCGGAACTGGCGCGGAAGATTGTGCACGGGTGGGAAAAAGCTTCGTCGGACGTGCGGCAGGCCTACAAGCAGTTTATAGGAGCGGTGGTGGACTTGGTTGACGGAGAAACGCGCTCCGAGGAGTTCCACGAGGTGGCGCTGACTATGTACCGGCTATTTGGCAGGCCAATGGAGGAGGAGGATCACATTGATAAAATTATTTCAGATAAAAAGTTAGAATTACAAAAACTTGTTGGACGCACAGTTACTGATGCCAAGTTGAGGCAAGTTGCATCTCTAGCACAGCGACTTTTAAATTTGCAGCCGAGCAATAAAAACTCTGCCATTTCTTTTGAAAGAAATCTAGATGCTAACGAGGATTTAGAATTTGGAGCTGATTTGTTTTTTCAAGCACCAGCTCGTTTCTTGGTTGATGTATCCTTAGATGATGGGGATATGATGGATTTTGAAAGCACTGTTTCATTAGAATTTCACAAAGAACAGTATGGCCATAATGTCCCAACAGATCATTCTGTTGTTAACAGGGAAAAGTTCAACCTGACTTGGTTACGAGATGCATGTGATAAAATAGTTAAGAATTGTAATTCACAATTATCCCAAGATGAATTGGCAATGGCCATTTGTCGGGTTCTTTATTCCGAAAAGCCTGGTGAAGAGATAGCTGGAGATCTGTTGGATCTTGTTGGCGATAGTGCATTTGAAACTGTGCAAATTTTTTTATTGCATCGAAAGGAGATTGTTGATTCTATTCATCATGGCTTATTGGTATTGAAGTCTGATAAAAATGCTTCAAATGCTCAGTCTCGCATGCCTAGTTATGGAACACAGGTGACTGTTCAAACAGAATCAGAAAAGCAAATTGACAAGCTTCGACGCAAGGAGGAAAAACGAAATAGACGGGGAGTAGAACATGCTGGTGATGGTGAATTGTCTGCACTGGATTTCTCATCTTTACATCAAGCAAGTGAGAGGAAAAAAATGTTTGATGAGATGATTGGTTCTGGAGATAAGTTCGAGTCAATAGCTGTTACTGCTCTTCCTGAAGGAACTGTAAGGAAGCATTTTAAGGGGTATGAAGAGGTTAATATTCCCCCAAAACCAACTGCACCATTGAAACCTGGAGAAAAGCTGATTGAAATCAGGGAGTTAGATGACTTTGCACAAGCTGCGTTCCGTGGGTACAAATCACTTAATCGCATTCAGAGCAGGATTTTTCCAACTGTTTATGGAACTAATGAGAATATTTTAGTGTGTGCTCCCACAGGAGCGGGCAAAACTAACATAGCTATGGTTTCCATTTTACACGAGATTGGACAACACTTTAGGGATGGCTACTTGCATAAAGAAGAATTTAAGATAGTTTATGTTGCTCCAATGAAGGCTTTGGCTGCAGAAGTTACATCAACATTCAGCCAACGTTTATCTCCTTTGAATATGATTGTCCGAGAGCTTACTGGAGATATGCAGCTCTCTAAAAATGAACTTGAAGAAACTCAGATGATAGTGACAACACCTGAGAAATGGGATGTCATTACACGCAAGAGCAGTGACATGTCACTGTCAATGCTGGTAAAGCTCTTAATTATTGATGAAGTCCATCTACTCAATGATGATAGAGGTCCTGTGATAGAGGCTCTAGTTGCCAGGACCCTACGGCAGGTGGAATCTACTCAGACAATGATACGCATTGTGGGCCTTTCTGCCACTCTTCCCAATTACTTGGAGGTTGCACAATTTCTCAGGGTAAATCCAGACACGGGTCTGTTCTTCTTTGATTCTAGTTATCGTCCTGTGCCTCTTGCACAACAGTATATTGGAATTAGTGAGCCAAACTTTGCAGCTCGTAATGAATTGTTGAATGATATATGCTATACAAAGATTGCTGATTCTCTTAGGCAAGGCCATCAGGCAATGGTGTTTGTCCATTCACGAAAGGACACTGCAAAGACAGCTGATAAACTGGTTGAACTAGCACGAAGGAATGAGGATTTTGAACTTTTTAGTAATAATACACATCCACAATATACCTTCATGAAGAAAGAAGTCATTAAATCCAGAAACAAAGATCTTGTGCAACTTTTTGAATATGGTGTGGGTGTACATCATGCTGGGATGCTACGTGCAGATAGAGGACTTACTGAGCGACTTTTCTCCGATGGACTTCTGAAGGTTCTTGTCTGTACAGCAACTTTGGCATGGGGTGTCAATCTACCTGCACACACAGTTGTCATTAAGGGTACCCAATTATATGATCCAAAAGCTGGTGGGTGGCGAGACCTGGGTATGCTTGACGTTATGCAGATATTTGGGCGAGCTGGAAGACCTCAGTTTGACAAAAGCGGTGAAGGTATCATAATTACATCTCATGACAAACTAGCATATTATCTGCGACTGCTGACAAGCCAACTCCCTATAGAAAGCCAGTTTATTAGCTCCTTGAAAGATAATTTAAATGCAGAGGTGGCATTGGGTACTGTAACTAATGTTAAGGAAGCCTGTGCATGGCTTGGCTATACATATCTTTTCATAAGGATGAGGATGAATCCTTTAGCATACGGTATTGGGTGGGATGAGGTGATGGTGGATCCTGCTTTGAGTTCTAAGCAAAGATCTCTTGTAATTGATGCTGCACGTGCACTTGATAAAGCAAAAATGATGCGGTTTGATGAGAAAAGTGGCAATTTTTATTGTACTGAGCTTGGTCGCATTGCGAGCCATTTTTACATTCAATATTCCAGTGTTGAAACGTACAATGAAATGTTGAGACGCCACATGAATGACAGTGAGGTGATTAACATGATTGCACATTCATCTGAATTTGAGAATATTGCTGTTCGGGAAGAAGAACAGAATGAGCTAGAGATGTTGGCACGCACATCATGTCCATTAGAAATTAAGGGTGGTCCTTCCAATAAACATGGAAAGATTTCCATTTTGATTCAGTTGTACATATCTCGAGGTTCTATAGATTCTTTTTCTTTAGTATCTGATGCTTCATATATAAGTGCAAGCTTGGCTAGAATAACACGGGCTTTATTTGAGATTTGCTTACGAAGAGGCTGGTGTGAGATGTCTTTGTTCATGTTGGAATATTGCAAAGCTGTGGATCGCCAAGTTTGGCCGCATCAACATCCTCTTAGACAATTTGACAAGGACCTTTCTGCAGAAATATTGCGGAAGCTTGAAGAACGTGGGGCTGACCTAGACCGCTTGTATGAGATGGAGGAAAAAGACATTGGGGCATTAATTCGTTATGCGCCTGGAGGAAGGTTGGTCAAGCAACACCTAGGGTATTTTCCATCACTTCAGTTATCAGCAACTGTGAGTCCAATTACCAGAACTGTGTTGAAGGTTGATCTGGTCATTACGCCTGTTTTCATTTGGAAAGATCGTTTTCATGGTACTGCTCAACGTTGGTGGATTTTGGTAGAGGATTCTGAGAATGACCACATCTACCACTCTGAACTCTTTACGCTGACAAAGCGAATGGCTAGGGGTGAACCTTACAAGCTTTCCTTCACCGTACCAATATTTGAACCACATCCACCACAATATTACATTCATGCTATTTCTGATTCTTGGCTTCATGCCGAGGCATTCTACACTATTACTTTTCACAATTTACCATTGCCAGAGGCTCGTACTGCTCACACAGAACTCCTTGATTTAAAACCGCTTCCCATGTCTTCCCTTGGCAACAGTACTTATGAAGCATTATATAAATTTTCACATTTTAATCCTATACAAACACAGACTTTTCATGTCCTGTATCACACGGACAATAATGTTCTGTTAGGAGCTCCAACTGGAAGTGGAAAAACTATATCTGCTGAGCTTGCCATGCTTCGTCTTTTTAATACTCAGCCTGATATGAAGGTTATTTATATAGCTCCTTTGAAAGCTATTGTCAGGGAAAGAATGAGTGATTGGCAAAAGCGTCTTGTCTCTCAGCTAGGGAAAAAGATGGTTGAAATGACTGGAGACTATACTCCTGATTTGACGGCTCTCTTGTCGGCCAATATCATCATATCTACTCCTGAAAAGTGGGATGGAATAAGTCGTAATTGGCATAGCCGTAGCTATGTCACAAAGGTTGGACTTATGATATTGGATGAGATTCACTTATTGGGGGCTGATCGTGGACCCATTCTTGAGGTTATTGTTTCTAGGATGAGATACATATCATCCCAAACAGAACGTGCAGTACGGTTTGTAGGTCTTTCTACAGCTCTGGCTAATGCTGGTGATCTAGCTGATTGGTTAGGCGTTGAGGAAATTGGACTCTTCAATTTCAAGCCAAGTGTGAGGCCTGTACCCCTGGAAGTTCATATTCAGGGTTATCCTGGAAAATATTACTGCCCAAGGATGAATAGCATGAATAAACCAGCATATGCTGCAATATGCACACATTCACCTGCAAAACCAGTTCTTATATTTGTCTCATCACGACGCCAGACAAGACTTACTGCACTTGACCTAATTCAGTTTGCTGCATCAGATGAACAATCCAGACAATTCCTTAATTTGCCAGAAGAAACCCTACAGATGGTTCTGTCTCAAGTCTCTGACCTAAACCTAAGGCATACTTTACAATTTGGCATTGGATTACATCATGCAGGCCTGAATGACAAAGACAGATCTCTGGTTGAGGAACTTTTTGCAAACAACAAAATTCAGATATTGGTTTGTACCAGCACATTGGCTTGGGGTGTGAATCTTCCAGCTCATCTAGTGATTATCAAGGGGACAGAATACTATGATGGAAAAGCAAAGAGGTATGTTGATTTTCCAATCACTGATATTTTGCAAATGATGGGTCGTGCTGGACGGCCTCAATTTGATCAACATGGGAAAGCTGTGATTCTTGTTCATGAACCCAAGAAGAGCTTCTATAAAAAGTTCTTGTATGAACCCTTCCCGGTTGAGAGTAGTTTGAGAGAGCAGTTGCATGATCACATTAATGCCGAAATTATTTCTGGAACCATTTGCCATAAACAAGATGCAGTCCATTATCTTACATGGACTTACTTATTTCGTAGACTGATGGTTAATCCTGCTTACTATGGATTGGAGGATGCTGAATCTGAATTTCTAAATACATATTTGTCCAGCCTAGTACAGACCACATTTGAGGATTTGGAAGACAGTGGATGCATAAAGATGGATGAAGACAAGGTGGAGCCCATGATGTTGGGTACAATTGCATCTCAGTATTACCTCAGCTACATGACTGTATCAATGTTTGGTTCAAACATAGGTCCAGATACATCACTTGAAGTCTTTTTGCATATTTTATCTGCTGCTTCTGAATTTGATGAACTACCTGTGCGTCATAATGAGGAAAAATACAATGAAGCACTGTCTGAGAAAGTTAAATATCCAGTGGATAAGAACCGTCTAGATGACCCTCACATCAAAGCACTTCTTCTATTTCAGGCTCATTTTTCTCAATTGGAGTTACCAATTAGTGACTATGTCACAGACTTGAAATCAGTATTAGATCAGAGTATACGCGTAATTCAGGCCATGATTGATATTTGTGCAAACAGTGGGTGGCTTTCAAGCTCAATTACTTGCATGCATCTTCTGCAAATGGTCATGCAGGGTTTGTGGTTTGACAAGGAATCTTCCTTATGGATGCTGCCATGCATGAATACAGATCTGATAAGTTCACTAAGCAGAAGAGGAATTTCTAGTGTACAGGAATTACTAGACATTCCAAAAGCAGCATTGCAGACTGTAACTGCAAATTTCCCAGCTTCAAGATTGTACCAGGATCTTCAGCATTTCCCTCATGTTAAAATGAAATTAAAAGTTCAGAGGAAGGACACTGATGGTGACAGGTCTCGCATATTATCTGTTAGATTAGAGAAGACCAATTCTAGACGACACTCTTCTAGAGCATTTGTACCTCGATTTCCAAAGATAAAAGAGGAACAATGGTGGTTGGTTCTTGGTAATACCTCTACGTCTGAGCTATATGCTTTGAAAAGAGTTTCTGTTTCAGATCACTTAGTTACCTCAATGAAGTTGCCTCTGACTCCAGCTAATCTTCAGGGCGTAAAACTGATTTTAGTCTCCGATTGTTACATTGGATTTGAACAAGAACACTCCATTGAAGAACTTGATGTATGTTAA
>Glyma06g21945.1 sequence type=predicted peptide gene model=Glyma06g21945 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLFQIPRLTNSLRDPFDVDQYYLHRKTILHNQKPSNSASSLDESELARKIVHGWEKASSDVRQAYKQFIGAVVDLVDGETRSEEFHEVALTMYRLFGRPMEEEDHIDKIISDKKLELQKLVGRTVTDAKLRQVASLAQRLLNLQPSNKNSAISFERNLDANEDLEFGADLFFQAPARFLVDVSLDDGDMMDFESTVSLEFHKEQYGHNVPTDHSVVNREKFNLTWLRDACDKIVKNCNSQLSQDELAMAICRVLYSEKPGEEIAGDLLDLVGDSAFETVQIFLLHRKEIVDSIHHGLLVLKSDKNASNAQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRGVEHAGDGELSALDFSSLHQASERKKMFDEMIGSGDKFESIAVTALPEGTVRKHFKGYEEVNIPPKPTAPLKPGEKLIEIRELDDFAQAAFRGYKSLNRIQSRIFPTVYGTNENILVCAPTGAGKTNIAMVSILHEIGQHFRDGYLHKEEFKIVYVAPMKALAAEVTSTFSQRLSPLNMIVRELTGDMQLSKNELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVESTQTMIRIVGLSATLPNYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISEPNFAARNELLNDICYTKIADSLRQGHQAMVFVHSRKDTAKTADKLVELARRNEDFELFSNNTHPQYTFMKKEVIKSRNKDLVQLFEYGVGVHHAGMLRADRGLTERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRMNPLAYGIGWDEVMVDPALSSKQRSLVIDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVINMIAHSSEFENIAVREEEQNELEMLARTSCPLEIKGGPSNKHGKISILIQLYISRGSIDSFSLVSDASYISASLARITRALFEICLRRGWCEMSLFMLEYCKAVDRQVWPHQHPLRQFDKDLSAEILRKLEERGADLDRLYEMEEKDIGALIRYAPGGRLVKQHLGYFPSLQLSATVSPITRTVLKVDLVITPVFIWKDRFHGTAQRWWILVEDSENDHIYHSELFTLTKRMARGEPYKLSFTVPIFEPHPPQYYIHAISDSWLHAEAFYTITFHNLPLPEARTAHTELLDLKPLPMSSLGNSTYEALYKFSHFNPIQTQTFHVLYHTDNNVLLGAPTGSGKTISAELAMLRLFNTQPDMKVIYIAPLKAIVRERMSDWQKRLVSQLGKKMVEMTGDYTPDLTALLSANIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERAVRFVGLSTALANAGDLADWLGVEEIGLFNFKPSVRPVPLEVHIQGYPGKYYCPRMNSMNKPAYAAICTHSPAKPVLIFVSSRRQTRLTALDLIQFAASDEQSRQFLNLPEETLQMVLSQVSDLNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQILVCTSTLAWGVNLPAHLVIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQFDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLREQLHDHINAEIISGTICHKQDAVHYLTWTYLFRRLMVNPAYYGLEDAESEFLNTYLSSLVQTTFEDLEDSGCIKMDEDKVEPMMLGTIASQYYLSYMTVSMFGSNIGPDTSLEVFLHILSAASEFDELPVRHNEEKYNEALSEKVKYPVDKNRLDDPHIKALLLFQAHFSQLELPISDYVTDLKSVLDQSIRVIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFDKESSLWMLPCMNTDLISSLSRRGISSVQELLDIPKAALQTVTANFPASRLYQDLQHFPHVKMKLKVQRKDTDGDRSRILSVRLEKTNSRRHSSRAFVPRFPKIKEEQWWLVLGNTSTSELYALKRVSVSDHLVTSMKLPLTPANLQGVKLILVSDCYIGFEQEHSIEELDVC*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
