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Report for Sequence Feature Glyma06g21920

Feature Type:gene_model
Chromosome:Gm06
Start:18534606
stop:18541507
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g21920
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G07990AT Annotation by Michelle Graham. TAIR10: Cytochrome P450 superfamily protein | chr5:2560437-2562859 FORWARD LENGTH=513 SoyBaseE_val: 0ISS
GO:0009411GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV SoyBaseN/AISS
GO:0009718GO-bp Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009813GO-bp Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process SoyBaseN/AISS
GO:0010224GO-bp Annotation by Michelle Graham. GO Biological Process: response to UV-B SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0016711GO-mf Annotation by Michelle Graham. GO Molecular Function: flavonoid 3'-monooxygenase activity SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PTHR24298:SF44Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_Q8W3Y5UniRef Annotation by Michelle Graham. Best UniRef hit: Flavonoid 3'-hydroxylase n=3 Tax=Glycine max RepID=Q8W3Y5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q8W3Y5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Flavonoid 3'-hydroxylase n=3 Tax=Glycine max RepID=Q8W3Y5_SOYBN SoyBaseE_val: 0ISS

Proteins Associated with Glyma06g21920
LocusGene SymbolProtein Name
T T Tawny

Expression Patterns of Glyma06g21920
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g21920 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g202300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g21920
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g21920
>Glyma06g21920.1   sequence type=CDS   gene model=Glyma06g21920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTCCATTGATTGTTGCCTTGGCTACAATCGCAGCAGCAATCCTCATATATCGTATAATAAAGTTCATAACACGCCCATCCCTCCCCCTCCCACCGGGCCCTAAACCATGGCCCATAGTGGGAAACTTGCCACACATGGGCCCGGTGCCGCACCACTCCCTCGCGGCGTTGGCCCGCATCCACGGCCCGTTGATGCACCTCCGCCTCGGCTTCGTCGATGTCGTGGTTGCCGCGTCGGCCTCGGTGGCGGAACAGTTCTTGAAGATTCATGACTCTAATTTCAGCAGCCGGCCACCGAACGCCGGCGCGAAATATATAGCTTATAACTACCAAGATCTGGTGTTTGCCCCCTACGGCCCACGCTGGCGATTGCTCCGGAAACTCACCTCCGTTCACCTCTTCTCCGGCAAGGCCATGAATGAATTTAGACACTTGCGTCAGGAAGAGGTAGCTAGATTGACATGCAACTTGGCAAGTTCAGACACAAAAGCAGTGAATTTGGGACAATTATTGAATGTATGCACCACCAACGCATTAGCGAGGGCAATGATTGGACGAAGAGTGTTTAACGATGGCAATGGAGGGTGTGATCCTAGGGCTGATGAGTTTAAGGCTATGGTGATGGAGGTGATGGTGTTGGCTGGAGTTTTCAACATTGGTGACTTTATTCCTTCCTTGGAGTGGCTAGACCTTCAAGGGGTGCAAGCTAAGATGAAAAAATTACACAAAAGATTTGATGCATTTTTAACCAGCATTATTGAGGAGCACAATAACAGTTCTTCCAAGAATGAGAATCATAAGAATTTCTTGAGTATCTTATTGTCACTTAAAGATGTGAGGGATGATCATGGAAACCATCTCACTGATACCGAGATTAAAGCACTACTTCTGAACATGTTTACGGCAGGAACTGACACATCATCAAGCACCACAGAATGGGCCATTGCGGAACTAATAAAAAACCCACAAATTTTGGCCAAACTCCAACAAGAGTTGGACACCGTTGTGGGTCGAGATAGGAGTGTCAAAGAAGAGGACTTGGCCCACCTCCCATACTTACAAGCTGTTATCAAGGAAACCTTCAGACTCCACCCATCAACCCCTCTTTCTGTGCCACGTGCTGCTGCCGAGAGTTGTGAGATATTTGGCTACCACATCCCCAAGGGTGCTACACTCTTGGTGAACATTTGGGCCATAGCCCGAGACCCAAAAGAGTGGAATGACCCATTGGAGTTTAGGCCCGAAAGGTTTCTTCTAGGTGGTGAGAAGGCCGATGTTGATGTTAGGGGCAATGACTTTGAGGTGATACCTTTTGGTGCTGGACGAAGAATTTGTGCTGGACTTAGTCTTGGGCTTCAAATGGTTCAACTTCTCACTGCAGCCTTGGCCCATTCATTTGATTGGGAACTAGAAGATTGCATGAACCCAGAAAAGTTGAACATGGATGAAGCGTATGGGCTAACCCTACAACGGGCCGTGCCTCTTTCAGTGCACCCTAGGCCCAGGCTCGCACCACATGTGTACTCAATGTCTTCCTAA
Predicted protein sequences of Glyma06g21920
>Glyma06g21920.1   sequence type=predicted peptide   gene model=Glyma06g21920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSPLIVALATIAAAILIYRIIKFITRPSLPLPPGPKPWPIVGNLPHMGPVPHHSLAALARIHGPLMHLRLGFVDVVVAASASVAEQFLKIHDSNFSSRPPNAGAKYIAYNYQDLVFAPYGPRWRLLRKLTSVHLFSGKAMNEFRHLRQEEVARLTCNLASSDTKAVNLGQLLNVCTTNALARAMIGRRVFNDGNGGCDPRADEFKAMVMEVMVLAGVFNIGDFIPSLEWLDLQGVQAKMKKLHKRFDAFLTSIIEEHNNSSSKNENHKNFLSILLSLKDVRDDHGNHLTDTEIKALLLNMFTAGTDTSSSTTEWAIAELIKNPQILAKLQQELDTVVGRDRSVKEEDLAHLPYLQAVIKETFRLHPSTPLSVPRAAAESCEIFGYHIPKGATLLVNIWAIARDPKEWNDPLEFRPERFLLGGEKADVDVRGNDFEVIPFGAGRRICAGLSLGLQMVQLLTAALAHSFDWELEDCMNPEKLNMDEAYGLTLQRAVPLSVHPRPRLAPHVYSMSS*






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