Glyma06g21900 - SoyBase

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Report for Sequence Feature Glyma06g21900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	18503528
stop:	18508964
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g21900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61150	AT	Annotation by Michelle Graham. TAIR10: leo1-like family protein \| chr5:24603846-24607528 REVERSE LENGTH=623	SoyBase	E_val: 1.00E-171	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0008284	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of cell proliferation	SoyBase	N/A	ISS
GO:0009910	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
KOG2428	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR23146	Panther	LEO1 PROTEIN	JGI		ISS
PF04004	PFAM	Leo1-like protein	JGI		ISS
UniRef100_B9I2V4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PAF1 complex component n=1 Tax=Populus trichocarpa RepID=B9I2V4_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1KCZ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCZ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g21900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g21900

Paralog	Evidence	Comments
Glyma04g32540	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g21900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g202100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g21900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g21900

Limit To All Plant Sequences

>Glyma06g21900.2   sequence type=transcript   gene model=Glyma06g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTAACGAGCCACTACCCAACCCATGTAAGAGGTAAAGTTTTCTAATCAGCCACGCCAATTTACAATAAGGGGCGTGAAAATAATCATCATAATCATATTTCACTGATTTTAAAAACGCGACCCATCACTGTGTGTTTAACACACAGCAGAAAAGAACAAACCGCAGGTTCTTCCTAATCGAAACGGTTCCAAAGTAGTGAATAAACAAATTCTCGTGCCTAGGGTTTTCCCTTTTCTTCGATTCACACTCCCAGAGCGAAGCAACCGTCATGGGAGGAGGCGAGGAGAAGCGGCACCAGATGATGCAGAACCTCTTCGGAGATCAATCCGAGGAGGAGGAAGAGCTCGACGTCGATTCCGAGCACGAATCGAACCCGCAACAAAATTACCCCTCCGACGAGGGGGAGGGGGAGGGTGTGGGGGAGCAGGAGGGAGAGGGCGAGGTGGAGGGCCAGGGGGAGGTTGAAATCGAGAGCGATGGCGACGGAGATGGGGAGCCCGACCGCGAGAGCGAGGGCGAGAGGGAGCAGAGCTCGCAGGAGGTGGAGGTCGTGGAGAGGGAAGAGGAGAGCGAGGGGAGAGACTCAGATAGTGACGTCAAGGACGGCGGGTACAGCCAGCGCGGCGTCACGAGCAAGCGGAGGGACGACTTCGTCGAGAGCGGATCCGAGGAGAATCAGTATGCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGTGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCCAGAAATTCGTGATGTGTTTGGTGATTTTGATGATGATGAAGAGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATAGATACCCTATGGAGGAGGAAGGGAGTTACGGAAAGAATCTGAGACCTGAAGATATACTTGCTGATGAAGATCATCAGTATGAATCGGAGGAGGAAAACATTGAGATAAAAACTAAGGAGAAGCCACTTGGCCCCCCTTTAGAGTTAGAGGTTCCGTTACGACCACCTCCAGCTCTTCCAGAAAAGATGAACATGATTAAAGTTTCCAATATTATGGGTGTTGATCCAAAACCATTTGATCCTAAAACATATGTGGAAGAGGATACTTTTGTAACCGATGAATCTGGAACCAGAAAACGCATACGTTTGGAGAACAATATTGTACGCTGGAGGACTACTAAAAATCCTGATGGCACAACATCATGTGAAAGCAATGCTCGCTTTGTGAGATGGTCCGATGGCAGCCTGCAGTTGTTAATTGGGAATGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCACATCTTTTCCTTAGACATGGAAAGGGTATCCTCCAATCACAAGGAAGGTTGTTAAGGAAAATGAGGTTTATGCCATCTTCCTTGTCATCAAATTCTCATCGGCTGTTGACTGCCCTTGTTGACTCAAGGCATAAGAAGGTTTTTAAGGTGAAAAACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGGAGGATGAAGCGGATTATTATGATAATCGTCGTTCTCAGCATCGCTTTGAGGATGATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAATCCTCTCGGAACCCAATGGGTTACCCAGATGATGAGAGAGAGGAGTCTGAGTATGAAACTGAGGAGGAAGATGAGAGGCCTCCTTCACGTAAGAGGGATGAGGATACTGAGCCAGAGTATGAGGATGAGGAAGAAGAGGAAGAACACTATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGATTTGAATCTGATGAGGACTCTCCTCCAAGGAAAACAACCACCCATCGGCGGATGGCGGTTGTGTACGATAGTGATGAGGACTAAACTTGAGCTAGATTTTCATGGGAAGTGCAGCTATCTGATGCAGCAAAGGCAGAGATGGCTCTTAGTTCCCCCCATATATAGCTACATTTTTAATATTTCATCCTTATATACATAAAGCAGAGCCTGGGACACTAAAGTAGTGTTTATTCTCAGGTCACAATATATGTTTTTTTGACTGTCTTGTTAATGGTGATAAAAGAAATTCAGTGTAAATAAGTTTGTTTTTCTGTATTTTCCGATCACAAATTTTCGTCCAAGGGGCAGGTAATGGTTGACAAGTGCCGGACCTAAGGAACTTGTTCAAGGTCCTTCCCTTTTTTACTTTATCAAATGAATGATGTCATTACTTTGCAACTTTATATGATAGTAACATTTTAGATTTTCTTTA

Coding sequences of Glyma06g21900

Limit To All Plant Sequences

>Glyma06g21900.1   sequence type=CDS   gene model=Glyma06g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAGGCGAGGAGAAGCGGCACCAGATGATGCAGAACCTCTTCGGAGATCAATCCGAGGAGGAGGAAGAGCTCGACGTCGATTCCGAGCACGAATCGAACCCGCAACAAAATTACCCCTCCGACGAGGGGGAGGGGGAGGGTGTGGGGGAGCAGGAGGGAGAGGGCGAGGTGGAGGGCCAGGGGGAGGTTGAAATCGAGAGCGATGGCGACGGAGATGGGGAGCCCGACCGCGAGAGCGAGGGCGAGAGGGAGCAGAGCTCGCAGGAGGTGGAGGTCGTGGAGAGGGAAGAGGAGAGCGAGGGGAGAGACTCAGATAGTGACGTCAAGGACGGCGGGTACAGCCAGCGCGGCGTCACGAGCAAGCGGAGGGACGACTTCGTCGAGAGCGGATCCGAGGAGAATCAGTATGCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGTGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCCAGAAATTCGTGATGTGTTTGGTGATTTTGATGATGATGAAGAGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATAGATACCCTATGGAGGAGGAAGGGAGTTACGGAAAGAATCTGAGACCTGAAGATATACTTGCTGATGAAGATCATCAGTATGAATCGGAGGAGGAAAACATTGAGATAAAAACTAAGGAGAAGCCACTTGGCCCCCCTTTAGAGTTAGAGGTTCCGTTACGACCACCTCCAGCTCTTCCAGAAAAGATGAACATGATTAAAGTTTCCAATATTATGGGTGTTGATCCAAAACCATTTGATCCTAAAACATATGTGGAAGAGGATACTTTTGTAACCGATGAATCTGGAACCAGAAAACGCATACGTTTGGAGAACAATATTGTACGCTGGAGGACTACTAAAAATCCTGATGGCACAACATCATGTGAAAGCAATGCTCGCTTTGTGAGATGGTCCGATGGCAGCCTGCAGTTGTTAATTGGGAATGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCACATCTTTTCCTTAGACATGGAAAGGGTATCCTCCAATCACAAGGAAGGTTGTTAAGGAAAATGAGGTTTATGCCATCTTCCTTGTCATCAAATTCTCATCGGCTGTTGACTGCCCTTGTTGACTCAAGGCATAAGAAGGTTTTTAAGGTGAAAAACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGGAGGATGAAGCGGATTATTATGATAATCGTCGTTCTCAGCATCGCTTTGAGGATGATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAATCCTCTCGGAACCCAATGGGTTACCCAGATGATGAGAGAGAGGAGTCTGAGTATGAAACTGAGGAGGAAGATGAGAGGCCTCCTTCACGTAAGAGGGATGAGGATACTGAGCCAGAGTATGAGGATGAGGAAGAAGAGGAAGAACACTATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGGTACTGCTTATTTTATTAAAAAAATTAGTCAGCTTTAACTTTGGCAGTAGGCCCATGGAGTTATTTCTGATTAGTTTCAGATTGCTTCTTAGCAGTGCCTCCTTATTGTTAAGTGTTAATAAGGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGATTTGAATCTGATGAGGACTCTCCTCCAAGGAAAACAACCACCCATCGGCGGATGGCGGTTGTGTACGATAGTGATGAGGACTAA

>Glyma06g21900.2   sequence type=CDS   gene model=Glyma06g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGAGGCGAGGAGAAGCGGCACCAGATGATGCAGAACCTCTTCGGAGATCAATCCGAGGAGGAGGAAGAGCTCGACGTCGATTCCGAGCACGAATCGAACCCGCAACAAAATTACCCCTCCGACGAGGGGGAGGGGGAGGGTGTGGGGGAGCAGGAGGGAGAGGGCGAGGTGGAGGGCCAGGGGGAGGTTGAAATCGAGAGCGATGGCGACGGAGATGGGGAGCCCGACCGCGAGAGCGAGGGCGAGAGGGAGCAGAGCTCGCAGGAGGTGGAGGTCGTGGAGAGGGAAGAGGAGAGCGAGGGGAGAGACTCAGATAGTGACGTCAAGGACGGCGGGTACAGCCAGCGCGGCGTCACGAGCAAGCGGAGGGACGACTTCGTCGAGAGCGGATCCGAGGAGAATCAGTATGCTCACCATGATGACGGGGAAGAAGAGGTCGACGAAGCCAGAAGCCCTAGTGGGTCACCCAGGGATGAAAAAGATGAGACTCGGGACTTGCATTCAGCCCCAGAAATTCGTGATGTGTTTGGTGATTTTGATGATGATGAAGAGGAGGAAATGGGGTATGCAATCCAGCAGGACATTGAACAAGATTCGAATAGATACCCTATGGAGGAGGAAGGGAGTTACGGAAAGAATCTGAGACCTGAAGATATACTTGCTGATGAAGATCATCAGTATGAATCGGAGGAGGAAAACATTGAGATAAAAACTAAGGAGAAGCCACTTGGCCCCCCTTTAGAGTTAGAGGTTCCGTTACGACCACCTCCAGCTCTTCCAGAAAAGATGAACATGATTAAAGTTTCCAATATTATGGGTGTTGATCCAAAACCATTTGATCCTAAAACATATGTGGAAGAGGATACTTTTGTAACCGATGAATCTGGAACCAGAAAACGCATACGTTTGGAGAACAATATTGTACGCTGGAGGACTACTAAAAATCCTGATGGCACAACATCATGTGAAAGCAATGCTCGCTTTGTGAGATGGTCCGATGGCAGCCTGCAGTTGTTAATTGGGAATGAAGTTCTTGACATATCAGTGCAAGATGCACAGCATGATCAAGCACATCTTTTCCTTAGACATGGAAAGGGTATCCTCCAATCACAAGGAAGGTTGTTAAGGAAAATGAGGTTTATGCCATCTTCCTTGTCATCAAATTCTCATCGGCTGTTGACTGCCCTTGTTGACTCAAGGCATAAGAAGGTTTTTAAGGTGAAAAACTGCATAACTGACATTGATCCTGAGAGGGAAAAAGAGGAAAAAGAGAAGGCTGAAAGCCAAAATATCCGCGCAAATGTGCTTCTTAACCGAAAGCGTGAGAAGGTGAATCGGAAGTATACTCCAGCTGTGGAGAGGAGGCGTCAACTTTCTCCTGGGTTTTTAGAGGATGCTTTGGATGAGGAGGATGAAGCGGATTATTATGATAATCGTCGTTCTCAGCATCGCTTTGAGGATGATTTGGAAGCGGAAGCCCGAGCAGAGAAACGAATTATGAATGCTAAAAAGTCGCAGGGACCTAAAGATATCCCTCGTAAGTCTTCCTTCCCACCTGCTAAATCCTCTCGGAACCCAATGGGTTACCCAGATGATGAGAGAGAGGAGTCTGAGTATGAAACTGAGGAGGAAGATGAGAGGCCTCCTTCACGTAAGAGGGATGAGGATACTGAGCCAGAGTATGAGGATGAGGAAGAAGAGGAAGAACACTATGAAGAAGCTGAACAAGTTAATGATGCATCAGATGAGGAGGAAGAGGAGGAACCAAAGCAGAAGAACAAGGAGTTTAGAGGCAGTGCCAAAAGGAAGGGATTTGAATCTGATGAGGACTCTCCTCCAAGGAAAACAACCACCCATCGGCGGATGGCGGTTGTGTACGATAGTGATGAGGACTAA

Predicted protein sequences of Glyma06g21900

Limit To All Plant Sequences

>Glyma06g21900.1   sequence type=predicted peptide   gene model=Glyma06g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGGEEKRHQMMQNLFGDQSEEEEELDVDSEHESNPQQNYPSDEGEGEGVGEQEGEGEVEGQGEVEIESDGDGDGEPDRESEGEREQSSQEVEVVEREEESEGRDSDSDVKDGGYSQRGVTSKRRDDFVESGSEENQYAHHDDGEEEVDEARSPSGSPRDEKDETRDLHSAPEIRDVFGDFDDDEEEEMGYAIQQDIEQDSNRYPMEEEGSYGKNLRPEDILADEDHQYESEEENIEIKTKEKPLGPPLELEVPLRPPPALPEKMNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGTRKRIRLENNIVRWRTTKNPDGTTSCESNARFVRWSDGSLQLLIGNEVLDISVQDAQHDQAHLFLRHGKGILQSQGRLLRKMRFMPSSLSSNSHRLLTALVDSRHKKVFKVKNCITDIDPEREKEEKEKAESQNIRANVLLNRKREKVNRKYTPAVERRRQLSPGFLEDALDEEDEADYYDNRRSQHRFEDDLEAEARAEKRIMNAKKSQGPKDIPRKSSFPPAKSSRNPMGYPDDEREESEYETEEEDERPPSRKRDEDTEPEYEDEEEEEEHYEEAEQVNDASDEEEEEVLLILLKKLVSFNFGSRPMELFLISFRLLLSSASLLLSVNKEPKQKNKEFRGSAKRKGFESDEDSPPRKTTTHRRMAVVYDSDED*

>Glyma06g21900.2   sequence type=predicted peptide   gene model=Glyma06g21900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGGEEKRHQMMQNLFGDQSEEEEELDVDSEHESNPQQNYPSDEGEGEGVGEQEGEGEVEGQGEVEIESDGDGDGEPDRESEGEREQSSQEVEVVEREEESEGRDSDSDVKDGGYSQRGVTSKRRDDFVESGSEENQYAHHDDGEEEVDEARSPSGSPRDEKDETRDLHSAPEIRDVFGDFDDDEEEEMGYAIQQDIEQDSNRYPMEEEGSYGKNLRPEDILADEDHQYESEEENIEIKTKEKPLGPPLELEVPLRPPPALPEKMNMIKVSNIMGVDPKPFDPKTYVEEDTFVTDESGTRKRIRLENNIVRWRTTKNPDGTTSCESNARFVRWSDGSLQLLIGNEVLDISVQDAQHDQAHLFLRHGKGILQSQGRLLRKMRFMPSSLSSNSHRLLTALVDSRHKKVFKVKNCITDIDPEREKEEKEKAESQNIRANVLLNRKREKVNRKYTPAVERRRQLSPGFLEDALDEEDEADYYDNRRSQHRFEDDLEAEARAEKRIMNAKKSQGPKDIPRKSSFPPAKSSRNPMGYPDDEREESEYETEEEDERPPSRKRDEDTEPEYEDEEEEEEHYEEAEQVNDASDEEEEEEPKQKNKEFRGSAKRKGFESDEDSPPRKTTTHRRMAVVYDSDED*

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