Glyma06g21866 - SoyBase

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Report for Sequence Feature Glyma06g21866

Feature Type:	gene_model
Chromosome:	Gm06
Start:	18453832
stop:	18476841
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g21866

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G07980	AT	Annotation by Michelle Graham. TAIR10: dentin sialophosphoprotein-related \| chr5:2549432-2554669 REVERSE LENGTH=1501	SoyBase	E_val: 6.00E-96	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_Q9SD86	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dentin sialophosphoprotein-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9SD86_ARATH	SoyBase	E_val: 3.00E-93	ISS
UniRef100_UPI0002339351	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339351 related cluster n=1 Tax=unknown RepID=UPI0002339351	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g21866

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g21866 not represented in the dataset	Glyma06g21866 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g21866

Paralog	Evidence	Comments
Glyma04g32581	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g21866 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g202000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g21866

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g21866

Limit To All Plant Sequences

>Glyma06g21866.1   sequence type=CDS   gene model=Glyma06g21866   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGGAAACGAAGTAGGAGACAGGGTCCATAATTTTTTTGGTCAAGAGAACTTGTCCCAGGGACAATATCATTCTCAGGCGGTTGATGGGAACTGGCCAGGACTAAGCAACAATCTGTGGGCTGGTAGCCAGCGATCGACTGGTGTGCCTTTTATTTCCAATTTGAAGAATTTTAATCAACAACAATCAGATCCTGAGCAGGGACATGCAAGCTCTCCACGTCTGCGACATGGTTTGAACCTATCTCAGCCTAGTTTTAGGCCTGAGTCTGGCAGAAATCTGCTGCCAAACCAGCAATCAGCTGTGAATGGCTATATACAGGGACAACAGGTTTTTCAGACCAGGCAGAATGAAGCTAACATTTTGGGAGTGGACACAGAGTCTGATTGGAATAGTCTGTCAAGAGGAATACCAGTGCTGGAGTCACAAGGGAGTGGTCTTGAACTCTACAAGAAAAACTTGGCTAGGAATGATGCTGCTGAATCTCCAGTCAATTTTGATTTTTTTGGTGGTCAACAGCAAATAGGTGGACGGCATGGTGGAATGCTTCAACCTTTACCTAGACAGCAGTCAGGCATAAATGAAATGCATCTATTAAAGCAGCAAGCAGTACTTAACCAGATGCAAGAACTTCAGAGGCAGCAACAATTTCATCACTTAGAAGCGAAGCAACAGAATTCTATTGCTCCGACTTCCTCCATTTCAAAACAGGCAGTTGCAAGCCATTCTGCATCTCTCATCAGTGGCATTCCCATTAATGAGGTATCTAACATTATATGGCAGCCTGAAGTTATGCCAACTAATGCTAATTGGCTTCAGCATGGTGCCTCTCCAGTTCTGCATGGGTCCTCTAATGGACTTGTGTTATCCCCTGAACAAGGACAGGCATTGCGTCTTATGGGTTTGGTTCCTAATCAGGGTGATCAGTCTCTTTATGGGGTTCCAATTTCTGGTTCAAGAGGCACACCTAATCTGTATAATGTTCAAGCAGATAAGCCTGCAGTGCCTCAGGTTTCTATCCCACACCAGTATTCTCATGTTCATGGGAACAAACCTGCACTGCAGCACATATCAGCTGGTGATAATTCATTTTCTCCTCATCAATATACTGCATTTCCAGACCAACTTAACACAAATGATGGGACTTCAGTTTCAAGGCAGAATGTTCAAGGGAAAAATATGTTTGGTTCTACTGCTCACAGTATAAATAATGGACTGAATATGGAGAACTTGCAGCAAATGAATTCTGAGCAAAGAATTGCACCAATGCAAGATTTTCACGGGAGGCAAGAACTAGCTGGATCTTTAGAGATGTCGCAGGACAAGATGCTTGTGCAGGCTCCTCCTTCACAGAACATGGCTACCTTAGATCCTACTGAAGAGAAGATTTTGTTTGGTTCAGATGACAGCTTGTGGGATGGGTTTGGCAGTAATATGGGTGGTTTCAGTATGCTGGATGGTACAGATAGTTTTAGTGGGATTCCATCTATTCAAAGTGGGAGTTGGAGTGCACTTATGCAGTCTGCTGTAGCAGAAACTTCTAGTAGTGACATAGGCAAACAAGAGGAGTTGAGTGGTCTAAGTTTCCGGAATTTGGGACAGTCGTCTGGAAATGAACAGCCTTCAACTATTGATAGCAGCAAACAACAATCTATTTGGACTGACAGTAACTTGCAATCAGCATCCAATATAAATTCAAGACTTTTTCTTTGGCCTGATGGTGTTAGTAGGCCAAATGCCTCTGAAAATTATTCTGGTGTTTCTGGGTTTCATCAGTCAGGTCCTGATACTTTGCATGAACAGCATAACAGGTTACAGAACAATTCTCAGAGATCAATTCCACAGTTTTTAGAAAGAGGCAAATGGTTAGATTGCAGTCCTCAGCAAAAACAACTTGCCGAAGGGGGTCACATATTTGGAAATGCTGCTAACTCTTCAGGTATAGAAAAAAACCAGCAGACCATATTGTCATGTAATAGTAGTGGTGATCCTTTCAATAAATCTAATGGATGGGATATTATGAAATTGCCATTTGATAGAAGTTCAAATTTCAAAACCCATGAAAGTGAAAACTTATCGCAGCCCCATCACGAGAAAGCTATGTGTGAGGAGATGGGCCAGATTCCTGCTATGTGGGAACCTGATTCTGATACTAATTCATCTGTTGGAATGGAACATGTGAAGTCTGCAGGTAATATGCAGGTTTGTGGGGAAGATTCTGGTACAAATGGTATTGCTACATTGCCAAATTCAGGCACTGCATGGTTCAGCCAGCAAAGCAGCAAGCAGCTCCCTAATTTTGATGTATGGAGGGATGCAGAGTCAGCAGGAAGCTATAGAAGAAATGAAGTTCCAGGAAAGTATAAGCATCATATGGAGAAGAATCCCTTAGTTTTGGAATCATCAAAGGATGGAAATGTAGAAGGTGCGGCACATGATTTGGAGAATTCTAACAAAAAGGAAAAATCTGCAGATAGTCTTGGCTCTAATCCTTCCAATCCTAGAGCTGGTGGTATGAGAGAAAATAGTAGTTTTGATGGCAATGATTTGCATAGTCCAAAGTTATCTGGTCAGGGAAATCGAAGACCTCCTGTTTCTCGTAAATTTCAGTATCACCCAATGGGGGATCTGGGTGTTGAAGTGGAACCTTATGGAATTGGAAACAAACATGTCAAAAATTCACAGCCTATGCCCCATCAACCCTTGGGAGGACAGTCAAAGTATGGTCATTCTGACAGGAAATATAATGAAATGAATAAGGGTGACTCAAAAAGCTTAGAAAACAATGCTTTGAAAAGCATACACCCTGGTCAAATGTCAAAAAAATTAACCTCATTTGACAGAAGTGTTGGGAATTATGCCTCACAGAAGACTGCATCATCCAGGGTGCCTGAAACTGACTCTTCTGATGGATCTGGTGCACATCCTCCGGAAAATCAAAGTTTTTTCTCTCAGGGCATTGGTTTACAATTGGCTCCCCCTACTCAAAGGCTTCCTGTGGTATCTTCTTATGGCTCATCAGAGACAGATCATACTACACCGCATGTGTCTGAGACAAGGGATAAGGACCATACATGGTTGGGTACTAATCAGACGTTTCCATCTCTAGATCCATCCCATGGGGAGCTTAGGAGTAATATTTCTAGCACAGCAGGACAAATTTTTGATAAGGCATCACAATACGGTATGCTGGGAAACATTCCACAGGCTTTTACATCTGGTTTTCCTTTCTCCAGGATCCATACTCAGAATCAGAATTTGGCAAGTCTTGGTGGACAAGTAGCAAATACTCAATCTGCTAATGTAACTTTCACTGCTTCCATGAATCAGACTGATGAATACTGTGAAAAAGCTCAAACTAGTCAATCTGAATTGGCTTCTGCTCAGGACATGTCCCAGCTGAGTGCTATAGACGAAGATCGTCTGAGAGATCCGGCCATCCAAATTTTGACAGCAGAGACTGGCACTCAGCCTTCTGTTACTTTTAGTGCATCTCTACATGGCACCCCTTCAAAAGTTACGCACAATGTATGGACCAGTTTTTCTAGCAAGCAACATCCTAATGCTTCAAGGTTTCTATCCCAGCCCCAACAAATTAATGATTGTGAAATGATCTCCAGCTCACAGAAGCCAGGTGATGAGGGTTTGGAGAAAGATGGCAATGACCATTCTGGTACTGGCCCTTGTTCTGCTTACTCCAATAATTCTGTGGGAAACTCGCTTAAAGAAATCTCTGTGCTGCAGACATTGCCTGAGAGTGTTGTTGCTTCTGAACAGGCTGCATGTTCATCACATTTGAAAGAAACTGTTGGAAAACCTACTCTTGATGCATCTCAACCCAGCCCAACTGCTACTCCCAGAGATATTGAGGCTTTTGGCCGATCTCTAAGACCAAACATTGTTTTGAATCATAATTTCTCCTTGTTGGATCAAGTTCAATCTGCAAGAAACATGGAGACTGATCCTAGTAATCGGGATGTCAAGAGATTGAAAGTTTCTGATAATATAGTGGTGGAAAAACAGCTGGTAGATTCCAACCATGGGCAACAGTTGTCATATGGGTATGATAATGTGATCAAAGATGGGTGGTCAGGTAATAATTCCATGCCATCATCAGATCCTAATATGCTAAGCTTTTCAACAAAGCCACTTGATGGACAGTACACAAATGCATCTTCTCAAGAGGAGGTTGGTTATGGTCAAAAAATTGCTCTTAATGTTGCTGACAGTAACAAAGCAGCCTCTGTTAAAAGTGATTATTCTCTGGTAAATCCTCAAATGGCACCATCATGGTTTGAGCGATATGGAACTTTTAAAAATGGTAAGATGTTGCCAATGTACAATGCACAGAAGATGACTGCTGCTAAGATAATGGACCAGCCTTTCATTGTAGCAAACCAATCAGATAGTTTGCGCTTTCATAATTCAGTAGAGCAAATTCAGAGTGTCAGTGATGCCCAGCTAAGTAATGCTAGTGAAAGTCCAATGCCTGCTTTAGCTGCAAGTAAGCATGCAGACTCTCAGTTATCGACACCTGCTGTTGAACCCGACTTACTTATTATGAGACCGAAGAAGCGAAAAAGTGCCACATCTGAACTCATACCATGGCATAAAGAACTGTTAGAGGGTTCTGAAAGGCTTCGAGATATCAGTGCGGCAGAATTAGACTGGGCTCAAAGTGCAAGCAGATTGATTGAAAAGGTTGAAGACAGTGTGGAGGTAGTTGAAGATTTGCCAGCAGTGGTGAAGTCAAAAAGAAGACTTGTCTTGACTACACAGCTTATGCAGCAACTACTTAGCCCTCCTCCAGCTGCAGTTCTTGTAGCAGATGTGCAGTTGCATCATGAGAGTGTGGTCTACTCAGTTGCCAGATTAGCATTAGGAGAAGCATGCAGTTCAATCTCATGGTCCAGATGTGATACACTTTTGCCTCCTGGCAACAAGAACCTGCTGCCAGAGAAGTGCAAATCATCCGATAAAATTGATCATTACATTTTGAAAGTTACGGACTTTGTTGATAGAGCAAGGAAATTGGAAGATGATATATTGAGATTAAATAGCAAAGCCTCAATTTTGGACTTGAGAGTGGAATGTCAGGATTTGGAAAGATATTCTGTCATCAATCGATTTGCCAAGTTCCATGGACGGGGACAAAATGATGGGGCAGAGACCTCATCATCTTCTGATGCAAATAATAATGCTCAAAAATCGTTCCCCCTAAAATATGTTACTGCAGTTCCATTGCCTAGGAATCTCCCAGACAGGGTACAATGTCTTTCACTTGGATAA

Predicted protein sequences of Glyma06g21866

Limit To All Plant Sequences

>Glyma06g21866.1   sequence type=predicted peptide   gene model=Glyma06g21866   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPGNEVGDRVHNFFGQENLSQGQYHSQAVDGNWPGLSNNLWAGSQRSTGVPFISNLKNFNQQQSDPEQGHASSPRLRHGLNLSQPSFRPESGRNLLPNQQSAVNGYIQGQQVFQTRQNEANILGVDTESDWNSLSRGIPVLESQGSGLELYKKNLARNDAAESPVNFDFFGGQQQIGGRHGGMLQPLPRQQSGINEMHLLKQQAVLNQMQELQRQQQFHHLEAKQQNSIAPTSSISKQAVASHSASLISGIPINEVSNIIWQPEVMPTNANWLQHGASPVLHGSSNGLVLSPEQGQALRLMGLVPNQGDQSLYGVPISGSRGTPNLYNVQADKPAVPQVSIPHQYSHVHGNKPALQHISAGDNSFSPHQYTAFPDQLNTNDGTSVSRQNVQGKNMFGSTAHSINNGLNMENLQQMNSEQRIAPMQDFHGRQELAGSLEMSQDKMLVQAPPSQNMATLDPTEEKILFGSDDSLWDGFGSNMGGFSMLDGTDSFSGIPSIQSGSWSALMQSAVAETSSSDIGKQEELSGLSFRNLGQSSGNEQPSTIDSSKQQSIWTDSNLQSASNINSRLFLWPDGVSRPNASENYSGVSGFHQSGPDTLHEQHNRLQNNSQRSIPQFLERGKWLDCSPQQKQLAEGGHIFGNAANSSGIEKNQQTILSCNSSGDPFNKSNGWDIMKLPFDRSSNFKTHESENLSQPHHEKAMCEEMGQIPAMWEPDSDTNSSVGMEHVKSAGNMQVCGEDSGTNGIATLPNSGTAWFSQQSSKQLPNFDVWRDAESAGSYRRNEVPGKYKHHMEKNPLVLESSKDGNVEGAAHDLENSNKKEKSADSLGSNPSNPRAGGMRENSSFDGNDLHSPKLSGQGNRRPPVSRKFQYHPMGDLGVEVEPYGIGNKHVKNSQPMPHQPLGGQSKYGHSDRKYNEMNKGDSKSLENNALKSIHPGQMSKKLTSFDRSVGNYASQKTASSRVPETDSSDGSGAHPPENQSFFSQGIGLQLAPPTQRLPVVSSYGSSETDHTTPHVSETRDKDHTWLGTNQTFPSLDPSHGELRSNISSTAGQIFDKASQYGMLGNIPQAFTSGFPFSRIHTQNQNLASLGGQVANTQSANVTFTASMNQTDEYCEKAQTSQSELASAQDMSQLSAIDEDRLRDPAIQILTAETGTQPSVTFSASLHGTPSKVTHNVWTSFSSKQHPNASRFLSQPQQINDCEMISSSQKPGDEGLEKDGNDHSGTGPCSAYSNNSVGNSLKEISVLQTLPESVVASEQAACSSHLKETVGKPTLDASQPSPTATPRDIEAFGRSLRPNIVLNHNFSLLDQVQSARNMETDPSNRDVKRLKVSDNIVVEKQLVDSNHGQQLSYGYDNVIKDGWSGNNSMPSSDPNMLSFSTKPLDGQYTNASSQEEVGYGQKIALNVADSNKAASVKSDYSLVNPQMAPSWFERYGTFKNGKMLPMYNAQKMTAAKIMDQPFIVANQSDSLRFHNSVEQIQSVSDAQLSNASESPMPALAASKHADSQLSTPAVEPDLLIMRPKKRKSATSELIPWHKELLEGSERLRDISAAELDWAQSASRLIEKVEDSVEVVEDLPAVVKSKRRLVLTTQLMQQLLSPPPAAVLVADVQLHHESVVYSVARLALGEACSSISWSRCDTLLPPGNKNLLPEKCKSSDKIDHYILKVTDFVDRARKLEDDILRLNSKASILDLRVECQDLERYSVINRFAKFHGRGQNDGAETSSSSDANNNAQKSFPLKYVTAVPLPRNLPDRVQCLSLG*

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