Glyma06g21440 - SoyBase

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Report for Sequence Feature Glyma06g21440

Feature Type:	gene_model
Chromosome:	Gm06
Start:	17988169
stop:	17992626
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g21440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52090	AT	Annotation by Michelle Graham. TAIR10: DNA-directed RNA polymerase, RBP11-like \| chr3:19318069-19318998 REVERSE LENGTH=116	SoyBase	E_val: 7.00E-38	ISS
GO:0000394	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation	SoyBase	N/A	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006366	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription from RNA polymerase II promoter	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0009086	GO-bp	Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process	SoyBase	N/A	ISS
GO:0009616	GO-bp	Annotation by Michelle Graham. GO Biological Process: virus induced gene silencing	SoyBase	N/A	ISS
GO:0009853	GO-bp	Annotation by Michelle Graham. GO Biological Process: photorespiration	SoyBase	N/A	ISS
GO:0010050	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative phase change	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0000418	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase IV complex	SoyBase	N/A	ISS
GO:0000419	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase V complex	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005665	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, core complex	SoyBase	N/A	ISS
GO:0016591	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: DNA-directed RNA polymerase II, holoenzyme	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003899	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR13946	Panther	DNA-DIRECTED RNA POLYMERASE I,II,III	JGI		ISS
UniRef100_B4FJS1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase II subunit J n=1 Tax=Zea mays RepID=B4FJS1_MAIZE	SoyBase	E_val: 6.00E-39	ISS
UniRef100_I1KCX1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KCX1_SOYBN	SoyBase	E_val: 5.00E-70	ISS

Expression Patterns of Glyma06g21440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g21440 not represented in the dataset	Glyma06g21440 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g21440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g198400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g21440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g21440

Limit To All Plant Sequences

>Glyma06g21440.2   sequence type=transcript   gene model=Glyma06g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCCCTAGATCGTTACGAGCGTTTCGTCGTCCCTGAAGGCACCAAAAATAACTATCTATTCTCTCAATCTTCAATTCTTCTCTTCTCTTTGGTTTCTTATGAGAGGGACACGAAGATCATCAATGCGGCGTCCTTCACCATTGAGAGAGAGGAGCACACCATCGACAACATCCTACGCATGCAGCTTCACAGAGACCCCAATGTCTTGTTTGTCGGATACAAGCTTCCTCATCCTCTTCAATACAAAATTATTGTCAGGTGATATTCTTGGTCGCACAGTTCATAAATTTCACCAATATGGAACATAGAAAATAGCCAAGGGCCATAGAGCACCAAAGGAAGCATGTTGATGTTGATGGTTTCTTGGTAAGAGTGATAACTTGCAACCATACGGGCAAGACAGGTTCCATGATAAGATCTTTGACTGCACATGGTTCTAGAATTGTTGTTTTATGTTCAGATCATTTAGGAGACAATGCGAGTCCAAATTTCAACTTGAGACCAACATGTGCTTATTTCATCACTGAGGTAGCAAAATGAGCATCCGGAAGGGCTCACATAGTACAGGCTTCCATAGCTGATGGTGTTTTGTCAGGTAATACTGACCCCAAGAAAAATATTGAGTTGCTACAAGATGCTATTGCTTCTATTACTCTCTTAGGAAGCATAATCACGTCCATCCCTTTATCGAGGTACCAATTAATTATGGCAACAAATCTATAAACATGAAGATGAATAATTTTTGTGGACAGTTTAAAATTGTGTAATTTGAAGGAATTTGCAATACTTAAGAGACTAGTATTTATACAATTACTTTGTTATCTTAAAATTTCTAATACTTAGGAACT

Coding sequences of Glyma06g21440

Limit To All Plant Sequences

>Glyma06g21440.1   sequence type=CDS   gene model=Glyma06g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCCCTAGATCGTTACGAGCGTTTCGTCGTCCCTGAAGGCACCAAAAATAACTATCTATTCTCTCAATCTTCAATTCTTCTCTTCTCTTTGGTTTCTTATGAGAGGGACACGAAGATCATCAATGCGGCGTCCTTCACCATTGAGAGAGAGGAGCACACCATCGACAACATCCTACGCATGCAGCTTCACAGAGACCCCAATGTCTTGTTTGTCGGATACAAGCTTCCTCATCCTCTTCAATACAAAATTATTGTCAGGGAACAAGTAGAACAGGTTCAGATGGTTTATGTTAATATTGTTCCTTGCTAA

>Glyma06g21440.2   sequence type=CDS   gene model=Glyma06g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATGCCCTAGATCGTTACGAGCGTTTCGTCGTCCCTGAAGGCACCAAAAATAACTATCTATTCTCTCAATCTTCAATTCTTCTCTTCTCTTTGGTTTCTTATGAGAGGGACACGAAGATCATCAATGCGGCGTCCTTCACCATTGAGAGAGAGGAGCACACCATCGACAACATCCTACGCATGCAGCTTCACAGAGACCCCAATGTCTTGTTTGTCGGATACAAGCTTCCTCATCCTCTTCAATACAAAATTATTGTCAGGTGA

Predicted protein sequences of Glyma06g21440

Limit To All Plant Sequences

>Glyma06g21440.1   sequence type=predicted peptide   gene model=Glyma06g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALDRYERFVVPEGTKNNYLFSQSSILLFSLVSYERDTKIINAASFTIEREEHTIDNILRMQLHRDPNVLFVGYKLPHPLQYKIIVREQVEQVQMVYVNIVPC*

>Glyma06g21440.2   sequence type=predicted peptide   gene model=Glyma06g21440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNALDRYERFVVPEGTKNNYLFSQSSILLFSLVSYERDTKIINAASFTIEREEHTIDNILRMQLHRDPNVLFVGYKLPHPLQYKIIVR*

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