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Report for Sequence Feature Glyma06g21130

Feature Type:gene_model
Chromosome:Gm06
Start:17564999
stop:17567918
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g21130
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26670AT Annotation by Michelle Graham. TAIR10: Vesicle transport v-SNARE family protein | chr1:9216103-9217793 FORWARD LENGTH=222 SoyBaseE_val: 8.00E-104ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0006886GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular protein transport SoyBaseN/AISS
GO:0006891GO-bp Annotation by Michelle Graham. GO Biological Process: intra-Golgi vesicle-mediated transport SoyBaseN/AISS
GO:0010351GO-bp Annotation by Michelle Graham. GO Biological Process: lithium ion transport SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0016192GO-bp Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport SoyBaseN/AISS
GO:0016197GO-bp Annotation by Michelle Graham. GO Biological Process: endosomal transport SoyBaseN/AISS
GO:0016558GO-bp Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix SoyBaseN/AISS
GO:0046907GO-bp Annotation by Michelle Graham. GO Biological Process: intracellular transport SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005768GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endosome SoyBaseN/AISS
GO:0005770GO-cc Annotation by Michelle Graham. GO Cellular Compartment: late endosome SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005802GO-cc Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000149GO-mf Annotation by Michelle Graham. GO Molecular Function: SNARE binding SoyBaseN/AISS
GO:0005483GO-mf Annotation by Michelle Graham. GO Molecular Function: soluble NSF attachment protein activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG1666 KOG V-SNARE JGI ISS
PTHR21230Panther VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED JGI ISS
PTHR21230:SF16Panther SUBFAMILY NOT NAMED JGI ISS
PF05008PFAM Vesicle transport v-SNARE protein N-terminus JGI ISS
PF12352PFAM Snare region anchored in the vesicle membrane C-terminus JGI ISS
UniRef100_B9RLV4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Vesicle transport V-snare protein vti1a, putative n=1 Tax=Ricinus communis RepID=B9RLV4_RICCO SoyBaseE_val: 1.00E-115ISS
UniRef100_I1KCV4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCV4_SOYBN SoyBaseE_val: 8.00E-157ISS

Expression Patterns of Glyma06g21130
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g21130 not represented in the dataset
Glyma06g21130 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g21130
ParalogEvidenceComments
Glyma04g33095 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g21130 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g196300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g21130
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g21130
>Glyma06g21130.2   sequence type=transcript   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAGTTCGGTGTAAACTAACGCAACGAATTCTCGTTGTTCTTTCTTCTTCCATTGATTCGTTGCAATATTTGTGCAAGCTCCGTTGCTTTCTCCGCCACCACTCCTCCGATCATTCTCCGGCACGCTTTTTCTTCAATCCCTCTCGCCACTTCATCTCCATCCACAAATTTTATTCGCCAAATTGCTCGTTGTTTTCTGAGATTCAGTTTATCTGCAAAATTTAAAATTCGTAACTAATATTTATAGGAATTGTGGACGTAAATATGTGCGTGTGTGTGTGAAATTAGCGTGTAAGTAATTGTGGTTGTTGTTGTTGTTGTTGTTTAGAATTGTTGTATTGGATCTGATTGATTGGAATTGGGAAGGTGTAGGGTAGAGAAATTGGGAACAATGAGTGAGGTGTTTGAAGGGTACGAGCGTCAATACTGTGAGCAATCGGCGAATCTTTCGCGGCAATGCACTGCGGCTTCTGCTCTTGATGGAGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGCGTGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAGCAATTTGAAAAGTGAAGTTAAAAGAGTCACGTCAGCTAGCGTCAATCTCACTGCTCGAGATGACTTGTTGGAGTCAGGAAGGGCTGATACACTGGCGGCATCAAATGATCAAAAAGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCCTCTGACAGAATAAAGGAGAGCAGAAAAACAATGCTGGAGACAGAGGATCTTGGTGAATTTATCCTCAGAGATTTGCATCAACAACGTGAATCCCTACTCCACGCCCATAAGACGATCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTAGCTCCTTAATGACAGCTCTGGTCCTTGCAATATTAATCATTTTATATTTCAAGCTGACTCATTAGTTGGCTATCTTTGCTTCTTATATGGCTAGCTATGTCTCATATTGGAGTGTATGTTGCCCAACAATGTGACGATGTTTGAAGAGTTGTGTGAACAATAGTTCTCACTAATTTCTATTATTACATGTAAAATTCTTTCGTTTGAGCAAGTGAGAATATTTTACCATTACAATGCATCATTGTTCAATTCATTCTATTATACTTTGTACTGGCGTGTACAAAGAAAATCAGAAATATCGTCGTGCCTAAAGAAGAACGGAGAAAGTGGACAGTGGAACAGTTAATTATTGTTGTTAATCAATATTTATCAATATTTACATTCATTGTAATTGTTTTTAAGTTCCAAACATGTACTGATTTTTCTTT

>Glyma06g21130.3   sequence type=transcript   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAGTTCGGTGTAAACTAACGCAACGAATTCTCGTTGTTCTTTCTTCTTCCATTGATTCGTTGCAATATTTGTGCAAGCTCCGTTGCTTTCTCCGCCACCACTCCTCCGATCATTCTCCGGCACGCTTTTTCTTCAATCCCTCTCGCCACTTCATCTCCATCCACAAATTTTATTCGCCAAATTGCTCGTTGTTTTCTGAGATTCAGTTTATCTGCAAAATTTAAAATTCGTAACTAATATTTATAGGAATTGTGGACGTAAATATGTGCGTGTGTGTGTGAAATTAGCGTGGTAGAGAAATTGGGAACAATGAGTGAGGTGTTTGAAGGGTACGAGCGTCAATACTGTGAGCAATCGGCGAATCTTTCGCGGCAATGCACTGCGGCTTCTGCTCTTGATGGAGAACAAAAGAAGCAAAAACTTTCTGATATAAAAGCTGGATTAGATGATGCTGACACATTGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGCGTGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAGCAATTTGAAAAGTGAAGTTAAAAGAGTCACGTCAGCTAGCGTCAATCTCACTGCTCGAGATGACTTGTTGGAGTCAGGAAGGGCTGATACACTGGCGGCATCAAATGATCAAAAAGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCCTCTGACAGAATAAAGGAGAGCAGAAAAACAATGCTGGAGACAGAGGATCTTGGTGAATTTATCCTCAGAGATTTGCATCAACAACGTGAATCCCTACTCCACGCCCATAAGACGATCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTAGCTCCTTAATGACAGCTCTGGTCCTTGCAATATTAATCATTTTATATTTCAAGCTGACTCATTAGTTGGCTATCTTTGCTTCTTATATGGCTAGCTATGTCTCATATTGGAGTGTATGTTGCCCAACAATGTGACGATGTTTGAAGAGTTGTGTGAACAATAGTTCTCACTAATTTCTATTATTACATGTAAAATTCTTTCGTTTGAGCAAGTGAGAATATTTTACCATTACAATGCATCATTGTTCAATTCATTCTATTATACTTTGTACTGGCGTGTACAAAGAAAATCAGAAATATCGTCGTGCCTAAAGAAGAACGGAGAAAGTGGACAGTGGAACAGTTAATTATTGTTGTTAATCAATATTTATCAATATTTACATTCATTGTAATTGTTTTTAAGTTCCAAACATGTACTGATTTTTCTTT

>Glyma06g21130.4   sequence type=transcript   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCAAGTTCGGTGTAAACTAACGCAACGAATTCTCGTTGTTCTTTCTTCTTCCATTGATTCGTTGCAATATTTGTGCAAGCTCCGTTGCTTTCTCCGCCACCACTCCTCCGATCATTCTCCGGCACGCTTTTTCTTCAATCCCTCTCGCCACTTCATCTCCATCCACAAATTTTATTCGCCAAATTGCTCGTTGTTTTCTGAGATTCAGTTTATCTGCAAAATTTAAAATTCGTAACTAATATTTATAGGAATTGTGGACGTAAATATGTGCGTGTGTGTGTGAAATTAGCGTGGTAGAGAAATTGGGAACAATGAGTGAGGTGTTTGAAGGGTACGAGCGTCAATACTGTGAGCAATCGGCGAATCTTTCGCGGCAATGCACTGCGGCTTCTGCTCTTGATGGAGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGCGTGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAGCAATTTGAAAAGTGAAGTTAAAAGAGTCACGTCAGCTAGCGTCAATCTCACTGCTCGAGATGACTTGTTGGAGTCAGGAAGGGCTGATACACTGGCGGCATCAAATGATCAAAAAGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCCTCTGACAGAATAAAGGAGAGCAGAAAAACAATGCTGGAGACAGAGGATCTTGGTGAATTTATCCTCAGAGATTTGCATCAACAACGTGAATCCCTACTCCACGCCCATAAGACGATCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTAGCTCCTTAATGACAGCTCTGGTCCTTGCAATATTAATCATTTTATATTTCAAGCTGACTCATTAGTTGGCTATCTTTGCTTCTTATATGGCTAGCTATGTCTCATATTGGAGTGTATGTTGCCCAACAATGTGACGATGTTTGAAGAGTTGTGTGAACAATAGTTCTCACTAATTTCTATTATTACATGTAAAATTCTTTCGTTTGAGCAAGTGAGAATATTTTACCATTACAATGCATCATTGTTCAATTCATTCTATTATACTTTGTACTGGCGTGTACAAAGAAAATCAGAAATATCGTCGTGCCTAAAGAAGAACGGAGAAAGTGGACAGTGGAACAGTTAATTATTGTTGTTAATCAATATTTATCAATATTTACATTCATTGTAATTGTTTTTAAGTTCCAAACATGTACTGATTTTTCTTT
Coding sequences of Glyma06g21130
>Glyma06g21130.1   sequence type=CDS   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAGGTGTTTGAAGGGTACGAGCGTCAATACTGTGAGCAATCGGCGAATCTTTCGCGGCAATGCACTGCGGCTTCTGCTCTTGATGGAGAACAAAAGAAGCAAAAACTTTCTGATATAAAAGCTGGATTAGATGATGCTGACACATTGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGCGTGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAGCAATTTGAAAAGTGAAGTTAAAAGAGTCACGTCAGCTAGCGTCAATCTCACTGCTCGAGATGACTTGTTGGAGTCAGGAAGGGCTGATACACTGGCGGCATCAAATGATCAAAAAGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCCTCTGACAGAATAAAGGAGAGCAGAAAAACAATGCTGGAGACAGAGGATCTTGGTGAATTTATCCTCAGAGATTTGCATCAACAACGTGAATCCCTACTCCACGCCCATAAGACGATCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTAGCTCCTTAATGACAGCTCTGGTCCTTGCAATATTAATCATTTTATATTTCAAGCTGACTCATTAG

>Glyma06g21130.2   sequence type=CDS   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGCGTGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAGCAATTTGAAAAGTGAAGTTAAAAGAGTCACGTCAGCTAGCGTCAATCTCACTGCTCGAGATGACTTGTTGGAGTCAGGAAGGGCTGATACACTGGCGGCATCAAATGATCAAAAAGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCCTCTGACAGAATAAAGGAGAGCAGAAAAACAATGCTGGAGACAGAGGATCTTGGTGAATTTATCCTCAGAGATTTGCATCAACAACGTGAATCCCTACTCCACGCCCATAAGACGATCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTAGCTCCTTAATGACAGCTCTGGTCCTTGCAATATTAATCATTTTATATTTCAAGCTGACTCATTAG

>Glyma06g21130.3   sequence type=CDS   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAGGTGTTTGAAGGGTACGAGCGTCAATACTGTGAGCAATCGGCGAATCTTTCGCGGCAATGCACTGCGGCTTCTGCTCTTGATGGAGAACAAAAGAAGCAAAAACTTTCTGATATAAAAGCTGGATTAGATGATGCTGACACATTGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGCGTGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAGCAATTTGAAAAGTGAAGTTAAAAGAGTCACGTCAGCTAGCGTCAATCTCACTGCTCGAGATGACTTGTTGGAGTCAGGAAGGGCTGATACACTGGCGGCATCAAATGATCAAAAAGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCCTCTGACAGAATAAAGGAGAGCAGAAAAACAATGCTGGAGACAGAGGATCTTGGTGAATTTATCCTCAGAGATTTGCATCAACAACGTGAATCCCTACTCCACGCCCATAAGACGATCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTAGCTCCTTAATGACAGCTCTGGTCCTTGCAATATTAATCATTTTATATTTCAAGCTGACTCATTAG

>Glyma06g21130.4   sequence type=CDS   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCGAAAAATGGACCTTGAGGCTAGGAGTTTGCAGCCAAGCGTGAAGGCAGCTCTTCTTGCCAAGTTAAGGGAATATAAAACTGATTTGAGCAATTTGAAAAGTGAAGTTAAAAGAGTCACGTCAGCTAGCGTCAATCTCACTGCTCGAGATGACTTGTTGGAGTCAGGAAGGGCTGATACACTGGCGGCATCAAATGATCAAAAAGGAAGACTTCTGATGTCTACTGAAAGACTTAATCAGTCCTCTGACAGAATAAAGGAGAGCAGAAAAACAATGCTGGAGACAGAGGATCTTGGTGAATTTATCCTCAGAGATTTGCATCAACAACGTGAATCCCTACTCCACGCCCATAAGACGATCCATGGAGTGGATGATAACATTAGCAAGAGCAAGAAAATTTTGTCGGCTATGTCAAGAAGGATGAGCAGGAACAAATGGATTGTTAGCTCCTTAATGACAGCTCTGGTCCTTGCAATATTAATCATTTTATATTTCAAGCTGACTCATTAG
Predicted protein sequences of Glyma06g21130
>Glyma06g21130.1   sequence type=predicted peptide   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEVFEGYERQYCEQSANLSRQCTAASALDGEQKKQKLSDIKAGLDDADTLIRKMDLEARSLQPSVKAALLAKLREYKTDLSNLKSEVKRVTSASVNLTARDDLLESGRADTLAASNDQKGRLLMSTERLNQSSDRIKESRKTMLETEDLGEFILRDLHQQRESLLHAHKTIHGVDDNISKSKKILSAMSRRMSRNKWIVSSLMTALVLAILIILYFKLTH*

>Glyma06g21130.2   sequence type=predicted peptide   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIRKMDLEARSLQPSVKAALLAKLREYKTDLSNLKSEVKRVTSASVNLTARDDLLESGRADTLAASNDQKGRLLMSTERLNQSSDRIKESRKTMLETEDLGEFILRDLHQQRESLLHAHKTIHGVDDNISKSKKILSAMSRRMSRNKWIVSSLMTALVLAILIILYFKLTH*

>Glyma06g21130.3   sequence type=predicted peptide   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEVFEGYERQYCEQSANLSRQCTAASALDGEQKKQKLSDIKAGLDDADTLIRKMDLEARSLQPSVKAALLAKLREYKTDLSNLKSEVKRVTSASVNLTARDDLLESGRADTLAASNDQKGRLLMSTERLNQSSDRIKESRKTMLETEDLGEFILRDLHQQRESLLHAHKTIHGVDDNISKSKKILSAMSRRMSRNKWIVSSLMTALVLAILIILYFKLTH*

>Glyma06g21130.4   sequence type=predicted peptide   gene model=Glyma06g21130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIRKMDLEARSLQPSVKAALLAKLREYKTDLSNLKSEVKRVTSASVNLTARDDLLESGRADTLAASNDQKGRLLMSTERLNQSSDRIKESRKTMLETEDLGEFILRDLHQQRESLLHAHKTIHGVDDNISKSKKILSAMSRRMSRNKWIVSSLMTALVLAILIILYFKLTH*






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