Glyma06g21120 - SoyBase

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Report for Sequence Feature Glyma06g21120

Feature Type:	gene_model
Chromosome:	Gm06
Start:	17553663
stop:	17559828
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g21120

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G61380	AT	Annotation by Michelle Graham. TAIR10: CCT motif -containing response regulator protein \| chr5:24675540-24678176 FORWARD LENGTH=618	SoyBase	E_val: 0	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0006351	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0010031	GO-bp	Annotation by Michelle Graham. GO Biological Process: circumnutation	SoyBase	N/A	ISS
GO:0010629	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of gene expression	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_C0SNP3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Timing of CAB expression 1 n=1 Tax=Glycine max RepID=C0SNP3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C0SNP3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Timing of CAB expression 1 n=1 Tax=Glycine max RepID=C0SNP3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g21120

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g21120

Paralog	Evidence	Comments
Glyma04g33110	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g21120 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g196200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g21120

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g21120

Limit To All Plant Sequences

>Glyma06g21120.1   sequence type=CDS   gene model=Glyma06g21120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGTCTGGTGAGGAGATTAATTTGAACATAGAGAGTGGTGGGAAGAGTGGTGGTGATGGGTTCATTGATAGGAGTAAGGTGCGGATTTTGTTGTGCGATAACGATTCCAAGAGTTCTCAAGAGGTTTTCACGCTTCTTTTGAGGTGTTCTTATCAGGTTACCTTGGTAAAGTCGGCAAGACAGGTAATTGATGCACTGAATGCAGAAGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCGATGAAGAAGGGTATGAAGATGTTGAAGTACATAGCACGTGATAAAGAGTTTCGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTACGCACTAATGAACTATTAAATTTGTGGACGCACATGTGGAGACGGAGGCGCATGCTTGGACTTGTAGAGAAGAACATCTTGAATTACGATTTTGATCTGGTAGTATCTGACCCTAGTGATGCCAACACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACTAATCCAGAGGCAGGAATATCAGTCCAACAAGAACAAGAGTCTACTATTGCAAATGCTGCTGCTGTTGAGGGACCTCCAGATGCTCATGCATCAGAATGTGGGCCTGATGTGGATGGAGTTAATGATCACCAAACAGCACATTTTTCATCTGGTCCGAAGAAGAGTGAACTAAGGATAGGGGAGTCATCAGCCTTCTTCACGTATGTTAAAGCATCAATACTTAAGAGCAACTTCGAAGGGGTTGTTAATGTAGACAACAATGGTGCTACGCATGTTGGGATGGAAGTTATGCATCAAGCATGTGCTCAACAAGGGGTGAATAGCCTTCAAATACTGGAAAATGGAGAGGCATGTGAAAGTCAATCGCAAGATGACTTACCCAGCAGCACTAGTATTCCTGATTCTTTGTCTATTGAGAGGTCTTGTACTCCACCTGCATCAATGGAAGTTTCACAGCAAAAGCACTACAGGGAAGAAAATTCACAACAGGGTGTGATGCATCCCAGAAATGGGACCCATTGTTCCGAGCATGAAGTATCTGGCATGGCTTCCCAACATGCTTATCCATATTATATTTCAGGGGTTGTTAATCATGTTATGATGCCTTCATCAGCACAAATGTATCATCAAAAGAATATCCAGGACCTACAGAATCATACTAGCACAGCTATGATTTCACAATACAATCATCTTCCCCAAGGCGGTCCTCATGGAACGGGGATGACATCCTTCCCATACTACCCAATGAGCATATGCTTACAACCTGGTCAGATTCCTAATCCTCATTCATGGCAATCATTTGGAAACTCAAGTCCATCAGAAGCCAAATTAATTAAAGTTGATAGGAGAGAAGCAGCATTGATGAAATTCAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTACATTAACAGGAAACGACTTGCTGAAAGGCGGCCTCGTGTAAGGGGACAGTTTGTCAGAAAGTTGAACGGTGCTAATGTGGATCTTAACGGGGAGCCTGCATCAATTGACTATGACGAAGATGACGAAGAGGATGAAGATGACCAGGGAGCAAGAGATTCTTCTCCTGAGGATGCTTGA

Predicted protein sequences of Glyma06g21120

Limit To All Plant Sequences

>Glyma06g21120.1   sequence type=predicted peptide   gene model=Glyma06g21120   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESGEEINLNIESGGKSGGDGFIDRSKVRILLCDNDSKSSQEVFTLLLRCSYQVTLVKSARQVIDALNAEGQHIDIILAELDLPMKKGMKMLKYIARDKEFRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILNYDFDLVVSDPSDANTNSTTLFSDDTDDKSKRSTNPEAGISVQQEQESTIANAAAVEGPPDAHASECGPDVDGVNDHQTAHFSSGPKKSELRIGESSAFFTYVKASILKSNFEGVVNVDNNGATHVGMEVMHQACAQQGVNSLQILENGEACESQSQDDLPSSTSIPDSLSIERSCTPPASMEVSQQKHYREENSQQGVMHPRNGTHCSEHEVSGMASQHAYPYYISGVVNHVMMPSSAQMYHQKNIQDLQNHTSTAMISQYNHLPQGGPHGTGMTSFPYYPMSICLQPGQIPNPHSWQSFGNSSPSEAKLIKVDRREAALMKFRQKRKERCFDKKIRYINRKRLAERRPRVRGQFVRKLNGANVDLNGEPASIDYDEDDEEDEDDQGARDSSPEDA*

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