Glyma06g20950 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g20950

Feature Type:	gene_model
Chromosome:	Gm06
Start:	17335571
stop:	17338829
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g20950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G47500	AT	Annotation by Michelle Graham. TAIR10: cycling DOF factor 3 \| chr3:17504276-17505964 REVERSE LENGTH=448	SoyBase	E_val: 5.00E-119	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PF02701	PFAM	Dof domain, zinc finger	JGI		ISS
UniRef100_D8UXL3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Dof1 protein n=1 Tax=Jatropha curcas RepID=D8UXL3_9ROSI	SoyBase	E_val: 9.00E-170	ISS
UniRef100_I1KCU1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCU1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g20950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g20950

Paralog	Evidence	Comments
Glyma04g33410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g20950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g194800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g20950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g20950

Limit To All Plant Sequences

>Glyma06g20950.1   sequence type=CDS   gene model=Glyma06g20950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAGGAGAATAAGGATCCAGCAATTAAGCTCTTCGGCCAGAAGATTGCCTTCGCCGGAGAAGTCGACCCTCCGGCCATTTCCGCCGGCGAAATTGACTCGCCGCCGGCGATGGATGTCGACAAGGACGAAGAAGACGACTTTGGTGACTCAGAGACTGAAGATGAGAAAGACAAGGATCCCCGAGCTGAAAAAGTTAGTGAGAAAACGAAAGAAGCTGATCCTCCTCCAAATGCTGCAGACTCAAAGAAGACCCCAGAGGGTATTCAGAACCCAAACACACCTTCCATAGACGAAGAATCTGCAAAGTCAAAAACCAACAAGTCAGAGAACAACAACAACAACAAAACACTGAAGAAGCCGGACAAAATTTTGCCATGTCCGCGCTGCAACAGCATGGACACAAAGTTCTGCTACTACAACAACTACAACGTCAACCAACCACGCTATTTCTGCAAGGCGTGCCAAAGGTACTGGACTGCGGGAGGAACCATGCGAAACGTGCCGGTGGGAGCGGGGAGAAGAAAGAACAAGAACTCGGCTTCGCACTACCGCCACATCACAATCTCTGAAGCACTTCAAGCAGCAAGAATTGATGCTGCCCCCAACGGGACTCATCATCTTTTGAAACCAAATGGGAGAGTCCTCAGCTTCGGATTAGAATTAGACCCTCCAATTTGTGATTCCATGGCCTCAGTCCTTAACCTCACTGCAGAGAAAAAGGGTACTCTTAACAACAATTCAAGAAACAACAACAACAACAACAACAACAACGGTGATGATTGCTCAAGTGCATCTTCAATTACTGTTTCCAATGAAGAAAACGGGAAAAGCACGTCTCAAGAATCAATTGTGGTGCCTAACAGCAACGGTTTCATCCACCATGTTCCATGCATTTCAACTCTTCCTTGGCCTTATCCTTTTCCCTCAGGAGCACCTGCTATGTGCCCTCCAGGGTTTCCAATGTCATTCTACCCTGCAGCATTTTGGAACATTCCATGGTTTCCCTCACAACACTCACACCATTCTTCTGCTCCAACTCCTAGGTCTCCGAATTCTCCGACACTAGGAAAACACTCCCGCGATGACGACGCGACAAAACAATACCATTTGCAAGAAGAACAACCACCCTCAAGGCAGAGAAACGGTTCTGTTTTGGTCCCCAAAACACTGAGAATTGATGACCCAAGTGAGGCTGCAAAGAGTTCTATATGGGCAACTTTGGGCATCAAGAATGAGTGTGTCACTGGTGGAGGCATGTTCAAGGGATTCCAATCAAAGAAAGAAGAGAAAGACCATGTTGTTGAAGCCTCTCCTGTGTTGAGAGCTAACCCTGCGGCTTTGTCTAGATCCCTTAACTTTCATGAGAACTCTTGA

Predicted protein sequences of Glyma06g20950

Limit To All Plant Sequences

>Glyma06g20950.1   sequence type=predicted peptide   gene model=Glyma06g20950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQENKDPAIKLFGQKIAFAGEVDPPAISAGEIDSPPAMDVDKDEEDDFGDSETEDEKDKDPRAEKVSEKTKEADPPPNAADSKKTPEGIQNPNTPSIDEESAKSKTNKSENNNNNKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSASHYRHITISEALQAARIDAAPNGTHHLLKPNGRVLSFGLELDPPICDSMASVLNLTAEKKGTLNNNSRNNNNNNNNNGDDCSSASSITVSNEENGKSTSQESIVVPNSNGFIHHVPCISTLPWPYPFPSGAPAMCPPGFPMSFYPAAFWNIPWFPSQHSHHSSAPTPRSPNSPTLGKHSRDDDATKQYHLQEEQPPSRQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNECVTGGGMFKGFQSKKEEKDHVVEASPVLRANPAALSRSLNFHENS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain