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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G16390 | AT | Annotation by Michelle Graham. TAIR10: organic cation/carnitine transporter 3 | chr1:5602921-5604477 FORWARD LENGTH=518 | SoyBase | E_val: 0 | ISS |
| GO:0015706 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nitrate transport | SoyBase | N/A | ISS |
| GO:0055085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transmembrane transport | SoyBase | N/A | ISS |
| GO:0070417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to cold | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009705 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole membrane | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016021 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane | SoyBase | N/A | ISS |
| GO:0005351 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sugar:hydrogen symporter activity | SoyBase | N/A | ISS |
| GO:0015144 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: carbohydrate transmembrane transporter activity | SoyBase | N/A | ISS |
| GO:0022857 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transmembrane transporter activity | SoyBase | N/A | ISS |
| KOG0255 | KOG | Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) | JGI | ISS | |
| PTHR24064 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24064:SF40 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00083 | PFAM | Sugar (and other) transporter | JGI | ISS | |
| UniRef100_I1KCR2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KCR2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9SA38 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Organic cation/carnitine transporter 3 n=1 Tax=Arabidopsis thaliana RepID=OCT3_ARATH | SoyBase | E_val: 0 | ISS |
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Glyma06g20500 not represented in the dataset |
Glyma06g20500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g33941 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g192100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g20500.2 sequence type=transcript gene model=Glyma06g20500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTCATTTGAGTAAGTGAGAACTTCCATTAATTAATATCTCTATCTTCCAATTCTTCCCCTCCAAATGGCAGACTCCACCCCTCTCCTCTCCCAACCCGACTCATCATCATCTCCGGACACACAAAAACCACAACCACCACCACCGCCACGAAACCAACAGCATCCCTCTCTGGGGTCCACAGTCGAACTCTGCATAGGCGAGTTCAACTGGTCCCAGTTCCTCCAGTCGATCCTCGTCTCCCTCGCGTGGATCTTTGACGCCCAGCAGACCTTCATCAGCGTCTTCACCGACGCCCCGCCGGCGTGGCGCTGCACCGAGCAGGCCGGCAATGCATGCAAGACTGCCAACACCAACACAGTCTGCAACCTCCCAGAAGGCTCGTGGGCCTGGGACGGGCCCACACAGGCCTCCATGGTGTCGGACTGGGGCCTGGAGTGCGCCAACTCCTCCATCACGGGCCTTCCCGCTTCGATGTTCTTCGCTGGCTGTTTGCTTGGCGGCTTCCTGCTGGCCTCGCTGGCTGATTCGTCGCTCGGCCGCAAGAACATGCTGTTCTTCTCCTGCCTCGTCATGGCCATCACTTCCTTTCTCGTCACTTTTTCGCCCAACGTCTCCATCTATTCTGCCCTCAAGTTTCTCTGTGGCTTTGCTCGTGCTACCATTGGGACCTCCGCGCTTGTGCTGGCCTCGGAGCTCGTTGGGAGACGGTGGCGCGCCCAGATTAGCGTCATTGGCTTCTTTTGTTTTACTATAGGGTTCTTGTCCCTGCCAGCCATGGCTTACATAAACAGAAGTTCTTCATGGAGGAACCTTTATCTCTGGACATCCATCTCAACCATGCTCTACTGCATCCTTGTGAAGTTGTTCGTTACGGAGTCCCCAAGATGGCTTCTAGTGCGAGGAAAAACAGAAGAAGCCGTGGAAACACTAAAGTGCATCACATCAATCACCCAAAGCAACCTCAATTTGGCCATTAATAACATGTCCCACGAGGAAGAAACATGTGACGTGGACATCTTCTCAGCCCTCAAAATCTTGCTACAAAATAAATGGTCTTCGAGAAGGTTATCATCAATTATGGCAATGGGAATAGGCATTGGATTGGTGTATTATGGCATGCCACTAGGGCTCCAAAACCTCTCCTTCAACCTCTACTTGAGTGTCATATTCAACGCCTTATCCGAGTTACCATCAGCATTGATTGTGTTATTCTTCATAGACAAGTTCAACAGGAGAATCACACTCCTCCTCTTCACTATTTTAAGTGGTCTTTTCAGCGTGATGTCAACCGTGCAAAGTTGTTCCCGACGTGTGTGAGGAACTCGGCGCTGTCGATGGCGAGGCTCGCGGTGGTGCTCGGTGGCATGTTCAGCCCGCTGCTGGTGAGTGCCGGAAGAGGGAACAAGTTTTTGTGTTATGGGGTTTTTGGGTTGGTGATAGGGTTTAGTGGGGTCTTTGGAATATTCTTGCCCGAGACAAAAGGGAGGGCATTCTGTGATTCAATGGATGAAGAAGAAAACAAAGAGAAAAACATGGCTTGTGGCATGTTGTTGGCTTGAATTCTGCGGGTTTCGAAAATGGAAAAAGAAAACATCGGGTGAGTGTGGTTGGTGGATTTACCCCAATTGGCAAGTGTGAAGAGAGACTTGTTATGTAAGGGTCAAATGTGGGAATACTGATGTTACATGTGTGTATAAAGTGTGGTTCTTTTTGTTGATTAGAGATAATCCAAAATCAAGAAAGTTCATAAAAAAAATAATAATTCCATAATGACTTCATGAAACGTGCATTTTGGCGCTCGTTTGTTACAATTTTTTTATATCACAA
>Glyma06g20500.1 sequence type=CDS gene model=Glyma06g20500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGACTCCACCCCTCTCCTCTCCCAACCCGACTCATCATCATCTCCGGACACACAAAAACCACAACCACCACCACCGCCACGAAACCAACAGCATCCCTCTCTGGGGTCCACAGTCGAACTCTGCATAGGCGAGTTCAACTGGTCCCAGTTCCTCCAGTCGATCCTCGTCTCCCTCGCGTGGATCTTTGACGCCCAGCAGACCTTCATCAGCGTCTTCACCGACGCCCCGCCGGCGTGGCGCTGCACCGAGCAGGCCGGCAATGCATGCAAGACTGCCAACACCAACACAGTCTGCAACCTCCCAGAAGGCTCGTGGGCCTGGGACGGGCCCACACAGGCCTCCATGGTGTCGGACTGGGGCCTGGAGTGCGCCAACTCCTCCATCACGGGCCTTCCCGCTTCGATGTTCTTCGCTGGCTGTTTGCTTGGCGGCTTCCTGCTGGCCTCGCTGGCTGATTCGTCGCTCGGCCGCAAGAACATGCTGTTCTTCTCCTGCCTCGTCATGGCCATCACTTCCTTTCTCGTCACTTTTTCGCCCAACGTCTCCATCTATTCTGCCCTCAAGTTTCTCTGTGGCTTTGCTCGTGCTACCATTGGGACCTCCGCGCTTGTGCTGGCCTCGGAGCTCGTTGGGAGACGGTGGCGCGCCCAGATTAGCGTCATTGGCTTCTTTTGTTTTACTATAGGGTTCTTGTCCCTGCCAGCCATGGCTTACATAAACAGAAGTTCTTCATGGAGGAACCTTTATCTCTGGACATCCATCTCAACCATGCTCTACTGCATCCTTGTGAAGTTGTTCGTTACGGAGTCCCCAAGATGGCTTCTAGTGCGAGGAAAAACAGAAGAAGCCGTGGAAACACTAAAGTGCATCACATCAATCACCCAAAGCAACCTCAATTTGGCCATTAATAACATGTCCCACGAGGAAGAAACATGTGACGTGGACATCTTCTCAGCCCTCAAAATCTTGCTACAAAATAAATGGTCTTCGAGAAGGTTATCATCAATTATGGCAATGGGAATAGGCATTGGATTGGTGTATTATGGCATGCCACTAGGGCTCCAAAACCTCTCCTTCAACCTCTACTTGAGTGTCATATTCAACGCCTTATCCGAGTTACCATCAGCATTGATTGTGTTATTCTTCATAGACAAGTTCAACAGGAGAATCACACTCCTCCTCTTCACTATTTTAAGTGGTCTTTTCAGCGTGATGTCAACCGTGCAAGTGAGTAAATCATCATCATCATGGAACAACAACGTGCAAATAGTGTTTGAGTTAGTTTCGTTCTTTAGCGCTTGTACTTCGTTCAACGTGTACCTAATTTATACCACAGAGTTGTTCCCGACGTGTGTGAGGAACTCGGCGCTGTCGATGGCGAGGCTCGCGGTGGTGCTCGGTGGCATGTTCAGCCCGCTGCTGGTGAGTGCCGGAAGAGGGAACAAGTTTTTGTGTTATGGGGTTTTTGGGTTGGTGATAGGGTTTAGTGGGGTCTTTGGAATATTCTTGCCCGAGACAAAAGGGAGGGCATTCTGTGATTCAATGGATGAAGAAGAAAACAAAGAGAAAAACATGGCTTGTGGCATGTTGTTGGCTTGA >Glyma06g20500.2 sequence type=CDS gene model=Glyma06g20500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGACTCCACCCCTCTCCTCTCCCAACCCGACTCATCATCATCTCCGGACACACAAAAACCACAACCACCACCACCGCCACGAAACCAACAGCATCCCTCTCTGGGGTCCACAGTCGAACTCTGCATAGGCGAGTTCAACTGGTCCCAGTTCCTCCAGTCGATCCTCGTCTCCCTCGCGTGGATCTTTGACGCCCAGCAGACCTTCATCAGCGTCTTCACCGACGCCCCGCCGGCGTGGCGCTGCACCGAGCAGGCCGGCAATGCATGCAAGACTGCCAACACCAACACAGTCTGCAACCTCCCAGAAGGCTCGTGGGCCTGGGACGGGCCCACACAGGCCTCCATGGTGTCGGACTGGGGCCTGGAGTGCGCCAACTCCTCCATCACGGGCCTTCCCGCTTCGATGTTCTTCGCTGGCTGTTTGCTTGGCGGCTTCCTGCTGGCCTCGCTGGCTGATTCGTCGCTCGGCCGCAAGAACATGCTGTTCTTCTCCTGCCTCGTCATGGCCATCACTTCCTTTCTCGTCACTTTTTCGCCCAACGTCTCCATCTATTCTGCCCTCAAGTTTCTCTGTGGCTTTGCTCGTGCTACCATTGGGACCTCCGCGCTTGTGCTGGCCTCGGAGCTCGTTGGGAGACGGTGGCGCGCCCAGATTAGCGTCATTGGCTTCTTTTGTTTTACTATAGGGTTCTTGTCCCTGCCAGCCATGGCTTACATAAACAGAAGTTCTTCATGGAGGAACCTTTATCTCTGGACATCCATCTCAACCATGCTCTACTGCATCCTTGTGAAGTTGTTCGTTACGGAGTCCCCAAGATGGCTTCTAGTGCGAGGAAAAACAGAAGAAGCCGTGGAAACACTAAAGTGCATCACATCAATCACCCAAAGCAACCTCAATTTGGCCATTAATAACATGTCCCACGAGGAAGAAACATGTGACGTGGACATCTTCTCAGCCCTCAAAATCTTGCTACAAAATAAATGGTCTTCGAGAAGGTTATCATCAATTATGGCAATGGGAATAGGCATTGGATTGGTGTATTATGGCATGCCACTAGGGCTCCAAAACCTCTCCTTCAACCTCTACTTGAGTGTCATATTCAACGCCTTATCCGAGTTACCATCAGCATTGATTGTGTTATTCTTCATAGACAAGTTCAACAGGAGAATCACACTCCTCCTCTTCACTATTTTAAGTGGTCTTTTCAGCGTGATGTCAACCGTGCAAAGTTGTTCCCGACGTGTGTGA
>Glyma06g20500.1 sequence type=predicted peptide gene model=Glyma06g20500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADSTPLLSQPDSSSSPDTQKPQPPPPPRNQQHPSLGSTVELCIGEFNWSQFLQSILVSLAWIFDAQQTFISVFTDAPPAWRCTEQAGNACKTANTNTVCNLPEGSWAWDGPTQASMVSDWGLECANSSITGLPASMFFAGCLLGGFLLASLADSSLGRKNMLFFSCLVMAITSFLVTFSPNVSIYSALKFLCGFARATIGTSALVLASELVGRRWRAQISVIGFFCFTIGFLSLPAMAYINRSSSWRNLYLWTSISTMLYCILVKLFVTESPRWLLVRGKTEEAVETLKCITSITQSNLNLAINNMSHEEETCDVDIFSALKILLQNKWSSRRLSSIMAMGIGIGLVYYGMPLGLQNLSFNLYLSVIFNALSELPSALIVLFFIDKFNRRITLLLFTILSGLFSVMSTVQVSKSSSSWNNNVQIVFELVSFFSACTSFNVYLIYTTELFPTCVRNSALSMARLAVVLGGMFSPLLVSAGRGNKFLCYGVFGLVIGFSGVFGIFLPETKGRAFCDSMDEEENKEKNMACGMLLA* >Glyma06g20500.2 sequence type=predicted peptide gene model=Glyma06g20500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADSTPLLSQPDSSSSPDTQKPQPPPPPRNQQHPSLGSTVELCIGEFNWSQFLQSILVSLAWIFDAQQTFISVFTDAPPAWRCTEQAGNACKTANTNTVCNLPEGSWAWDGPTQASMVSDWGLECANSSITGLPASMFFAGCLLGGFLLASLADSSLGRKNMLFFSCLVMAITSFLVTFSPNVSIYSALKFLCGFARATIGTSALVLASELVGRRWRAQISVIGFFCFTIGFLSLPAMAYINRSSSWRNLYLWTSISTMLYCILVKLFVTESPRWLLVRGKTEEAVETLKCITSITQSNLNLAINNMSHEEETCDVDIFSALKILLQNKWSSRRLSSIMAMGIGIGLVYYGMPLGLQNLSFNLYLSVIFNALSELPSALIVLFFIDKFNRRITLLLFTILSGLFSVMSTVQSCSRRV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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