SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g20230

Feature Type:gene_model
Chromosome:Gm06
Start:16658605
stop:16661224
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g20230
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G01470AT Annotation by Michelle Graham. TAIR10: homeobox 1 | chr3:182648-184034 REVERSE LENGTH=272 SoyBaseE_val: 4.00E-43ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009637GO-bp Annotation by Michelle Graham. GO Biological Process: response to blue light SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010167GO-bp Annotation by Michelle Graham. GO Biological Process: response to nitrate SoyBaseN/AISS
GO:0015706GO-bp Annotation by Michelle Graham. GO Biological Process: nitrate transport SoyBaseN/AISS
GO:0015996GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll catabolic process SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000976GO-mf Annotation by Michelle Graham. GO Molecular Function: transcription regulatory region sequence-specific DNA binding SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
GO:0043565GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding SoyBaseN/AISS
KOG2251 KOG Homeobox transcription factor JGI ISS
PTHR24326Panther FAMILY NOT NAMED JGI ISS
PTHR24326:SF218Panther JGI ISS
PF00046PFAM Homeobox domain JGI ISS
PF02183PFAM Homeobox associated leucine zipper JGI ISS
UniRef100_I1KCP4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCP4_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q2VTE6UniRef Annotation by Michelle Graham. Most informative UniRef hit: HDZip I protein n=1 Tax=Glycine max RepID=Q2VTE6_SOYBN SoyBaseE_val: 4.00E-177ISS

Expression Patterns of Glyma06g20230
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g20230
ParalogEvidenceComments
Glyma04g34341 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g20230 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g190200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g20230
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g20230
>Glyma06g20230.1   sequence type=CDS   gene model=Glyma06g20230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCTGGAACTGTCTTCTGCGCTGCTGCTACTGCTGCTTCTAATTTGACAACAACCACTTTTCTTCACAACCAAACACCTCCTTCCACCTCCTCTCAGCCTCCTCTCGATTCTCTTTTCCTCTCTGCCTCTTCCCCTTTCCTCGGTTCAAGATCTATAGTGAGTTTTGGAGATGTTCAAGGAGGGAAGGGGTGCAATGATTCATTCTTCCGCCCCTATGATGAGAATGGGGATGAGGACATGGACGAGTACTTCCACCAGCCTGAGAAGAAGCGCAGGCTCTCCGTGGAGCAAGTGAAGTTTCTTGAGAAGAGCTTTGATGAGGAGAACAAGCTCGAGCCCGAGAGGAAGATTTGGCTAGCCAAGGAACTCGGCTTGCAGCCTAGGCAGGTGGCGATTTGGTTTCAGAACCGCCGCGCGCGCTGGAAGACCAAGCAGATGGAAAAGGACTATGATTCCCTGCAGGCTAGTTACAATGATCTCAAGGCTAACTATGACAACCTTCTCAGGGAAAAGGATAAACTCAAAGCTGAGGTGGCAAGGCTCACTGAGAAGGTGCTTGGAAGAGAGAAAAATGAGAGTCACTTGGAACAGGCTGAAACCAACGGATTGCAGGAGCCGCTGCACAAGTCTTTGGTTGATTCAGCTTCTGAGGGTGAAGGGTCCAAAGTGACCTTTGAGGCTTGTAAACAGGAGGACATTAGCTCAGCCAAGAGTGACATATTTGATTCATCAGAAAGCCCACAATACACTGATGGAGTTCACTCTGCACTTCTAGAGACTGGTGATTCTTCTTATGTGTTCGAACCTGATCGATCTGATGTGTCTCAGGATGAAGAAGATAACTTGAGCAAGACCCTTCTGCCTCATTACATTTTTCCCAAGCTTGAAGATGTTGATTACTCCGACCCACCTCATGGTTCATGTAATTTTGGAATTCCGGAGGAAGATCAAGCCATTTGGTCTTGGCCTTACTGA
Predicted protein sequences of Glyma06g20230
>Glyma06g20230.1   sequence type=predicted peptide   gene model=Glyma06g20230   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAGTVFCAAATAASNLTTTTFLHNQTPPSTSSQPPLDSLFLSASSPFLGSRSIVSFGDVQGGKGCNDSFFRPYDENGDEDMDEYFHQPEKKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKDKLKAEVARLTEKVLGREKNESHLEQAETNGLQEPLHKSLVDSASEGEGSKVTFEACKQEDISSAKSDIFDSSESPQYTDGVHSALLETGDSSYVFEPDRSDVSQDEEDNLSKTLLPHYIFPKLEDVDYSDPPHGSCNFGIPEEDQAIWSWPY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo