Glyma06g19740 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g19740

Feature Type:	gene_model
Chromosome:	Gm06
Start:	16065184
stop:	16070778
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g19740

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40280	AT	Annotation by Michelle Graham. TAIR10: Prenyltransferase family protein \| chr5:16101391-16104783 FORWARD LENGTH=482	SoyBase	E_val: 9.00E-171	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0009737	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus	SoyBase	N/A	ISS
GO:0009788	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway	SoyBase	N/A	ISS
GO:0009934	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem structural organization	SoyBase	N/A	ISS
GO:0016558	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix	SoyBase	N/A	ISS
GO:0018342	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein prenylation	SoyBase	N/A	ISS
GO:0005965	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein farnesyltransferase complex	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004311	GO-mf	Annotation by Michelle Graham. GO Molecular Function: farnesyltranstransferase activity	SoyBase	N/A	ISS
GO:0004660	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein farnesyltransferase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
KOG0365	KOG	Beta subunit of farnesyltransferase	JGI		ISS
PTHR11774	Panther	GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT	JGI		ISS
PTHR11774:SF6	Panther	PROTEIN FARNESYLTRANSFERASE BETA SUBUNIT (CAAX FARNESYLTRANSFERASE BETA SUBUNIT) (RAS PROTEINS PRENYLTRANSFERASE BETA) (FTASE-BETA)	JGI		ISS
PF00432	PFAM	Prenyltransferase and squalene oxidase repeat	JGI		ISS
UniRef100_I1KCJ9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCJ9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q04903	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein farnesyltransferase subunit beta n=1 Tax=Pisum sativum RepID=FNTB_PEA	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g19740

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g19740 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g185500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g19740

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g19740

Limit To All Plant Sequences

>Glyma06g19740.2   sequence type=transcript   gene model=Glyma06g19740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTAACAAAACTAACTAAACTAAAATATTATATAAAAGCTAGTGTTTTAGTAAAAAAAAAAAACTAAACTAAGTTAAAAGATTAGTGAAGATAGTGTAGTAAGTGCTAACAAAACAAGCTTGACTCTTAAACTCTCGCAGTTTCTGGCGAAACCATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTATCTATCACAGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGACCACTGACCTGGTTTTAGCTGCCAACATCTTTATGTATACTGTAAAATAAATTCATTGGATTTGGAAAAATGCATATAAATGTAAAACAGCATTGGATTGATAGGTTTTATGTCTCCGGGTTTTGATGATTATTGATAATTTGACATGGATATGTACTGTTCCGAATGGCAAGATGTGATCTGTAACTTATCTCATTTAGTGGGATAATACTTTGTTGTTGTGAATACGCAT

Coding sequences of Glyma06g19740

Limit To All Plant Sequences

>Glyma06g19740.1   sequence type=CDS   gene model=Glyma06g19740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGA

>Glyma06g19740.2   sequence type=CDS   gene model=Glyma06g19740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGAAGAGAGCGAGAGAGATACGAATCCGGCGGCGGCGCCACCGTGTCCGACGGTGAGTCAACGGGACCAGTGGATGGTAGAGTCGCAGGTGTTTCAGATTTACCAACTCTTTGCCACCATTCCTGGCAGCGCCCAAAACCTCATGTATCTATCACAGTTAGAGCTGCAACGCGATAATCACATGCAGTATCTCTCCAAAGGCCTACGCCATCTCAGTTCCGCGTTTTCTGTCTTGGACGCTAATCGACCCTGGCTCTGTTACTGGATCTTCCATTCCATTGCTTTGCTGGGAGAATCCGTCGACGACGAACTCGAAGATAACACTATCGATTTTCTTAACCGTTGCCAGGATCCGAATGGTGGATATGCTGGGGGACCAGGCCAGATGCCTCACATTGCCACAACATATGCTGCAGTTAATACACTTATTACTTTGGGTGGTCAGAAATCCCTGGCATCAATTAATAGAGATAAACTGTATGGGTTTCTGCGGCGGATGAAGCAATCAAATGGGGGATTCAGGATGCATGATGAAGGAGAAATTGATGTTCGAGCTTGCTACACTGCCATTTCTGTTGCAAGTGTTTTGAACATTTTGGATGATGAGCTGATCAAGAATGTTGGAGACTACATTTTAAGCTGTCAAACATATGAGGGTGGCATTGCAGGTGAACCTGGTTCTGAGGCTCATGGTGGGTACACCTTTTGTGGATTAGCTACAATGATTCTGATTGGTGAGGTTAATCGCTTGGATCTGCCTCGACTAGTTGAATGGGCGGTATTCCGGCAAGGTAAGGAATGTGGATTCCAGGGGAGAACAAATAAATTGGTGGATGGATGCTATTCCTTTTGGCAGGGAGGTGCCGTTGCTCTATTGCAAAGATTATCTTCCATTATCAATAAACAAATGGAAGAGGCATCACAGACTTTTACGATATCTGATGTATCTGAAGCAAAAGAAAGTTTGGATGGGACCTCTAGTCATGCAACATGCCATGGTAAGCATGAAGGCACTAGTCAGTCCTGTTCAGCTGATTATAAAAGTATCGGTTATAACTTTATTAATGAGTGGAGAGCACAAGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTCTTATGTGCACAGGAGCAAGCGGGTGGACTGAGAGACAAACCGGGTAAACGTAGAGATCACTATCACACATGTTACTGTTTAAGTGGACTCTCATTGTGCCAGTATAGCTGGTCAAAGCACCCAGATTCTCCACCGCTGCCTAACCTAGTATTGGGCCCCTACTCTAATCTCTTAGAACCAATCCATCCCCTCTTTAATGTTGTCTTGGAACGATATCGTGAAGCTCATGTATTCTTCTTTACTGAGTCCTGA

Predicted protein sequences of Glyma06g19740

Limit To All Plant Sequences

>Glyma06g19740.1   sequence type=predicted peptide   gene model=Glyma06g19740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEESERDTNPAAAPPCPTVSQRDQWMVESQVFQIYQLFATIPGSAQNLMLELQRDNHMQYLSKGLRHLSSAFSVLDANRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVNTLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNRLDLPRLVEWAVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEEASQTFTISDVSEAKESLDGTSSHATCHGKHEGTSQSCSADYKSIGYNFINEWRAQEPLFHSIALQQYILLCAQEQAGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFNVVLERYREAHVFFFTES*

>Glyma06g19740.2   sequence type=predicted peptide   gene model=Glyma06g19740   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSEESERDTNPAAAPPCPTVSQRDQWMVESQVFQIYQLFATIPGSAQNLMYLSQLELQRDNHMQYLSKGLRHLSSAFSVLDANRPWLCYWIFHSIALLGESVDDELEDNTIDFLNRCQDPNGGYAGGPGQMPHIATTYAAVNTLITLGGQKSLASINRDKLYGFLRRMKQSNGGFRMHDEGEIDVRACYTAISVASVLNILDDELIKNVGDYILSCQTYEGGIAGEPGSEAHGGYTFCGLATMILIGEVNRLDLPRLVEWAVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLSSIINKQMEEASQTFTISDVSEAKESLDGTSSHATCHGKHEGTSQSCSADYKSIGYNFINEWRAQEPLFHSIALQQYILLCAQEQAGGLRDKPGKRRDHYHTCYCLSGLSLCQYSWSKHPDSPPLPNLVLGPYSNLLEPIHPLFNVVLERYREAHVFFFTES*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain