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Report for Sequence Feature Glyma06g19600

Feature Type:gene_model
Chromosome:Gm06
Start:15896778
stop:15897899
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g19600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62865AT Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). | chr5:25234064-25234567 FORWARD LENGTH=167 SoyBaseE_val: 5.00E-24ISS
PTHR13833Panther ZINC FINGER PROTEIN TRANSCRIPTION FACTOR JGI ISS
PTHR13833:SF16Panther NHL REPEAT-CONTAINING PROTEIN JGI ISS
UniRef100_I1KCI2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCI2_SOYBN SoyBaseE_val: 5.00E-128ISS
UniRef100_Q6Z2V7UniRef Annotation by Michelle Graham. Most informative UniRef hit: NHL repeat-containing protein-like n=1 Tax=Oryza sativa Japonica Group RepID=Q6Z2V7_ORYSJ SoyBaseE_val: 3.00E-22ISS

Expression Patterns of Glyma06g19600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g19600 not represented in the dataset
Glyma06g19600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g19600
ParalogEvidenceComments
Glyma04g35180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g19600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g184300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g19600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g19600
>Glyma06g19600.1   sequence type=CDS   gene model=Glyma06g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGAATTCTCAACAAAATGAGATTGATTTAACCGGCGACGGGGAAGAGAGGTCAAACTCTCTCTTAGCGAACACGCGCTGCAGCTTCTGCTTTCCCTGCTGCTTTGGTTCCCGGTGCCACTCGGTCAGCGTCGGGTTCGCGTGGTGGGAGCGCGTGCGAGCCACGTCGTCATGGTCGGAGACAAGCCCTCACTCTGAGGCGCAACCAGCAACCGGGAGTTCCAGTGGGAGTTGGTGGTCTGGCGGCGTGAGGGCCTTTATGAAGGTGCGGGAGTGGTCGGAGCTCGCGGCGGGGCCTCGGTGGAAGACCTTCATCCGGCGGTTCAGCCGGAGCCGGAGTGGCTGGGCCCGGCACGCGGCGGGGAAGTACCAGTACGACCCCTTGAGTTACTCCTTGAACTTCGACGAGGGGCATAACGGGTATTTCGATGGTGACGGTTACGACGGGTTACGGAATTTCTCCGCGCGTTACGCCGCGCCTCCTCCGTTTAAGCCCGTTTCCTCGGATTCCATTCAAGACGCCGCCGTTTTGGGATAA
Predicted protein sequences of Glyma06g19600
>Glyma06g19600.1   sequence type=predicted peptide   gene model=Glyma06g19600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSNSQQNEIDLTGDGEERSNSLLANTRCSFCFPCCFGSRCHSVSVGFAWWERVRATSSWSETSPHSEAQPATGSSSGSWWSGGVRAFMKVREWSELAAGPRWKTFIRRFSRSRSGWARHAAGKYQYDPLSYSLNFDEGHNGYFDGDGYDGLRNFSARYAAPPPFKPVSSDSIQDAAVLG*






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