Glyma06g19450 - SoyBase

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Report for Sequence Feature Glyma06g19450

Feature Type:	gene_model
Chromosome:	Gm06
Start:	15712958
stop:	15715163
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g19450

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G36330	AT	Annotation by Michelle Graham. TAIR10: Uncharacterised protein family (UPF0497) \| chr2:15233620-15235298 FORWARD LENGTH=283	SoyBase	E_val: 3.00E-42	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF04535	PFAM	Domain of unknown function (DUF588)	JGI		ISS
UniRef100_D7LIR2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: CASP-like protein ARALYDRAFT_482607 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=CSPLI_ARALL	SoyBase	E_val: 9.00E-39	ISS
UniRef100_I1KCG8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCG8_SOYBN	SoyBase	E_val: 4.00E-146	ISS

Expression Patterns of Glyma06g19450

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g19450 not represented in the dataset	Glyma06g19450 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g19450

Paralog	Evidence	Comments
Glyma04g35320	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g19450 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g183000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g19450

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g19450

Limit To All Plant Sequences

>Glyma06g19450.2   sequence type=transcript   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCGTTCTTCTGTTTTTTTCTTTTCACTTTCTTTCATTTTCCCACCACCCAAACAAACCTTTTCCTTTTCCATCTGTTTTCTCTTCGCCTTTATTGTTTTTTTTTCTTTCACTCTTGTTCCTTTTAAATTCCTCGCGACACAAACCAATGCAAACGGAAAACGCAGAATCGCAACTCACGAGAGTCACACCTCCGCCATGAACAAATCGCAGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCGCACTGGGACGGCACCGAGTCGCCGGAAAAATCGCCGGAGAAGCGCGACAACTCCGTGGCCATCGTGACCGTTGGCAAGCTCAAGCAGTTCACACCGGAGAAGCGCGCGGAGCACCGGGAACCGCCGGAAAATCCGCCGTCGGCGGCGGTGGTGATGTTCAACGACCAGGCGGCGGAGGAGGATCAGAGGACGGCGGAAAAGGCGGTTCCGGCGGTCGGCGGAGGAGAACGGAGATCAAGGTCGGCGGCGGCGGCGGAGGGGTGGAAGACGGACGAGACGGTGAGCAAGGCGGCGCTGGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTTTCTGTTATGGCCGCAGATAAGACGCAAGGTTGGAGTGGTGATTCATTTGATCGCTATAAAGAATATAGGTATTGTTTATCTGTGAATATTATTGGATTTGCATACTCTGCATTACAAGCATGTGATTTGACATGCCAACTTGCCACGGGGAAACGCTTAATCAGTCACCACCTTCGCAACCACTTTGATTTCTTCATGGATCAGGCAAGTTGTTTGCACTTTGCTTTGCACCACTCTGTTTCTATGAGTATGTTACTAAATAGTCAAAACATGAGATTTTGCGAGCTTAATCAGTGATCTTGAGTTTAAATTTAGATGTACAATTAGGTTGAATACTCAAGGAGAATTTTGTCACTTATAATAATTTTACATGCTCGAGCAAAAGATTTCTCGTAAAGATTGCATAATGACATAAATATAATGTGCAATTTGAATTGTTTAACAACTAATATTACAATCTCAGTACTTGTCATTGATATCTTATTCGGTAGTATTGAAGGTGTCTTTCTGTTCTACCAGTACCCAAAAGTACTCACCAAAAAAAGGCTTAATATGACTGATGCAGCAATTTTAGGTTCTGGCATATCTTCTGATATCGTCATCATCGTCTGCAGCCACACGGGTTGAGGATTGGATATTGAACTGGGGGAAAGACGAGTTCACAGAAATGGCCACTGCTTCAATTGGAATGGCCTTCCTCGCTTTCGTTGCCTTTGCTATCAGCTCACTCATCTCTGGTTACACTCTATGCAACCGAAGCTCCATGTGAACCTCACACTTCCTAATTCCCCAGTTCTTACAACTTGTCTATCTATAGAGTTCTCTCTTGTTTCCCTTGTACTGTGACGTTACATGCCACTGGTTATGTCCTAACTAGTAGATAGGACTTTAAACCCAGAAACGAAGGCTTTAAAATAGTGACAATACTACATTCCAGTTTCCCCTATTTTATTTCTTTGGGGATTGTTTACCTGTTTGCTCATTATTACCGGAAAAAGAAACAAATAAACTTTACATCATTAAAGAAAAAGGATTAATTAAA

>Glyma06g19450.3   sequence type=transcript   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCGTTCTTCTGTTTTTTTCTTTTCACTTTCTTTCATTTTCCCACCACCCAAACAAACCTTTTCCTTTTCCATCTGTTTTCTCTTCGCCTTTATTGTTTTTTTTTCTTTCACTCTTGTTCCTTTTAAATTCCTCGCGACACAAACCAATGCAAACGGAAAACGCAGAATCGCAACTCACGAGAGTCACACCTCCGCCATGAACAAATCGCAGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCGCACTGGGACGGCACCGAGTCGCCGGAAAAATCGCCGGAGAAGCGCGACAACTCCGTGGCCATCGTGACCGTTGGCAAGCTCAAGCAGTTCACACCGGAGAAGCGCGCGGAGCACCGGGAACCGCCGGAAAATCCGCCGTCGGCGGCGGTGGTGATGTTCAACGACCAGGCGGCGGAGGAGGATCAGAGGACGGCGGAAAAGGCGGTTCCGGCGGTCGGCGGAGGAGAACGGAGATCAAGGTCGGCGGCGGCGGCGGAGGGGTGGAAGACGGACGAGACGGTGAGCAAGGCGGCGCTGGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTTTCTGTTATGGCCGCAGATAAGACGCAAGGTTGGAGTGGTGATTCATTTGATCGCTATAAAGAATATAGGTATTGTTTATCTGTGAATATTATTGGATTTGCATACTCTGCATTACAAGCATGTGATTTGACATGCCAACTTGCCACGGGGAAACGCTTAATCAGTCACCACCTTCGCAACCACTTTGATTTCTTCATGGATCAGGTGTCTTTCTGTTCTACCAGTACCCAAAAGTACTCACCAAAAAAAGGCTTAATATGACTGATGCAGCAATTTTAGGTTCTGGCATATCTTCTGATATCGTCATCATCGTCTGCAGCCACACGGGTTGAGGATTGGATATTGAACTGGGGGAAAGACGAGTTCACAGAAATGGCCACTGCTTCAATTGGAATGGCCTTCCTCGCTTTCGTTGCCTTTGCTATCAGCTCACTCATCTCTGGTTACACTCTATGCAACCGAAGCTCCATGTGAACCTCACACTTCCTAATTCCCCAGTTCTTACAACTTGTCTATCTATAGAGTTCTCTCTTGTTTCCCTTGTACTGTGACGTTACATGCCACTGGTTATGTCCTAACTAGTAGATAGGACTTTAAACCCAGAAACGAAGGCTTTAAAATAGTGACAATACTACATTCCAGTTTCCCCTATTTTATTTCTTTGGGGATTGTTTACCTGTTTGCTCATTATTACCGGAAAAAGAAACAAATAAACTTTACATCATTAAAGAAAAAGGATTAATTAAA

>Glyma06g19450.4   sequence type=transcript   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACGTGAAGCAATCGACGTGGCATGGTCTTGTACTAAGTAAGAAACAACAAGGAAACTAAGCCCATCGTTCTTCTGTTTTTTTCTTTTCACTTTCTTTCATTTTCCCACCACCCAAACAAACCTTTTCCTTTTCCATCTGTTTTCTCTTCGCCTTTATTGTTTTTTTTTCTTTCACTCTTGTTCCTTTTAAATTCCTCGCGACACAAACCAATGCAAACGGAAAACGCAGAATCGCAACTCACGAGAGTCACACCTCCGCCATGAACAAATCGCAGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCGCACTGGGACGGCACCGAGTCGCCGGAAAAATCGCCGGAGAAGCGCGACAACTCCGTGGCCATCGTGACCGTTGGCAAGCTCAAGCAGTTCACACCGGAGAAGCGCGCGGAGCACCGGGAACCGCCGGAAAATCCGCCGTCGGCGGCGGTGGTGATGTTCAACGACCAGGCGGCGGAGGAGGATCAGAGGACGGCGGAAAAGGCGGTTCCGGCGGTCGGCGGAGGAGAACGGAGATCAAGGTCGGCGGCGGCGGCGGAGGGGTGGAAGACGGACGAGACGGTGAGCAAGGCGGCGCTGGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTTTCTGTTATGGCCGCAGATAAGACGCAAGGTTGGAGTGGTGATTCATTTGATCGCTATAAAGAATATAGGTATTGTTTATCTGTGAATATTATTGGATTTGCATACTCTGCATTACAAGCATGTGATTTGACATGCCAACTTGCCACGGGGAAACGCTTAATCAGTCACCACCTTCGCAACCACTTTGATTTCTTCATGGATCAGTACCCAAAAGTACTCACCAAAAAAAGGCTTAATATGACTGATGCAGCAATTTTAGGTTCTGGCATATCTTCTGATATCGTCATCATCGTCTGCAGCCACACGGGTTGAGGATTGGATATTGAACTGGGGGAAAGACGAGTTCACAGAAATGGCCACTGCTTCAATTGGAATGGCCTTCCTCGCTTTCGTTGCCTTTGCTATCAGCTCACTCATCTCTGGTTACACTCTATGCAACCGAAGCTCCATGTGAACCTCACACTTCCTAATTCCCCAGTTCTTACAACTTGTCTATCTATAGAGTTCTCTCTTGTTTCCCTTGTACTGTGACGTTACATGCCACTGGTTATGTCCTAACTAGTAGATAGGACTTTAAACCCAGAAACGAAGGCTTTAAAATAGTGACAATACTACATTCCAGTTTCCCCTATTTTATTTCTTTGGGGATTGTTTACCTGTTTGCTCATTATTACCGGAAAAAGAAACAAATAAACTTTACATCATTAAAGAAAAAGGATTAATTAAATTTTTAGTGCCTCATTTTTTTAAAATT

Coding sequences of Glyma06g19450

Limit To All Plant Sequences

>Glyma06g19450.1   sequence type=CDS   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAATCGCAGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCGCACTGGGACGGCACCGAGTCGCCGGAAAAATCGCCGGAGAAGCGCGACAACTCCGTGGCCATCGTGACCGTTGGCAAGCTCAAGCAGTTCACACCGGAGAAGCGCGCGGAGCACCGGGAACCGCCGGAAAATCCGCCGTCGGCGGCGGTGGTGATGTTCAACGACCAGGCGGCGGAGGAGGATCAGAGGACGGCGGAAAAGGCGGTTCCGGCGGTCGGCGGAGGAGAACGGAGATCAAGGTCGGCGGCGGCGGCGGAGGGGTGGAAGACGGACGAGACGGTGAGCAAGGCGGCGCTGGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTTTCTGTTATGGCCGCAGATAAGACGCAAGGTTGGAGTGGTGATTCATTTGATCGCTATAAAGAATATAGGTATTGTTTATCTGTGAATATTATTGGATTTGCATACTCTGCATTACAAGCATGTGATTTGACATGCCAACTTGCCACGGGGAAACGCTTAATCAGTCACCACCTTCGCAACCACTTTGATTTCTTCATGGATCAGGTTCTGGCATATCTTCTGATATCGTCATCATCGTCTGCAGCCACACGGGTTGAGGATTGGATATTGAACTGGGGGAAAGACGAGTTCACAGAAATGGCCACTGCTTCAATTGGAATGGCCTTCCTCGCTTTCGTTGCCTTTGCTATCAGCTCACTCATCTCTGGTTACACTCTATGCAACCGAAGCTCCATGTGA

>Glyma06g19450.2   sequence type=CDS   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCGTTCTTCTGTTTTTTTCTTTTCACTTTCTTTCATTTTCCCACCACCCAAACAAACCTTTTCCTTTTCCATCTGTTTTCTCTTCGCCTTTATTGTTTTTTTTTCTTTCACTCTTGTTCCTTTTAAATTCCTCGCGACACAAACCAATGCAAACGGAAAACGCAGAATCGCAACTCACGAGAGTCACACCTCCGCCATGAACAAATCGCAGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCGCACTGGGACGGCACCGAGTCGCCGGAAAAATCGCCGGAGAAGCGCGACAACTCCGTGGCCATCGTGACCGTTGGCAAGCTCAAGCAGTTCACACCGGAGAAGCGCGCGGAGCACCGGGAACCGCCGGAAAATCCGCCGTCGGCGGCGGTGGTGATGTTCAACGACCAGGCGGCGGAGGAGGATCAGAGGACGGCGGAAAAGGCGGTTCCGGCGGTCGGCGGAGGAGAACGGAGATCAAGGTCGGCGGCGGCGGCGGAGGGGTGGAAGACGGACGAGACGGTGAGCAAGGCGGCGCTGGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTTTCTGTTATGGCCGCAGATAAGACGCAAGGTTGGAGTGGTGATTCATTTGATCGCTATAAAGAATATAGGTATTGTTTATCTGTGAATATTATTGGATTTGCATACTCTGCATTACAAGCATGTGATTTGACATGCCAACTTGCCACGGGGAAACGCTTAATCAGTCACCACCTTCGCAACCACTTTGATTTCTTCATGGATCAGGCAAGTTGTTTGCACTTTGCTTTGCACCACTCTGTTTCTATGAGTATGTTACTAAATAGTCAAAACATGAGATTTTGCGAGCTTAATCAGTGA

>Glyma06g19450.3   sequence type=CDS   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CATCGTTCTTCTGTTTTTTTCTTTTCACTTTCTTTCATTTTCCCACCACCCAAACAAACCTTTTCCTTTTCCATCTGTTTTCTCTTCGCCTTTATTGTTTTTTTTTCTTTCACTCTTGTTCCTTTTAAATTCCTCGCGACACAAACCAATGCAAACGGAAAACGCAGAATCGCAACTCACGAGAGTCACACCTCCGCCATGAACAAATCGCAGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCGCACTGGGACGGCACCGAGTCGCCGGAAAAATCGCCGGAGAAGCGCGACAACTCCGTGGCCATCGTGACCGTTGGCAAGCTCAAGCAGTTCACACCGGAGAAGCGCGCGGAGCACCGGGAACCGCCGGAAAATCCGCCGTCGGCGGCGGTGGTGATGTTCAACGACCAGGCGGCGGAGGAGGATCAGAGGACGGCGGAAAAGGCGGTTCCGGCGGTCGGCGGAGGAGAACGGAGATCAAGGTCGGCGGCGGCGGCGGAGGGGTGGAAGACGGACGAGACGGTGAGCAAGGCGGCGCTGGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTTTCTGTTATGGCCGCAGATAAGACGCAAGGTTGGAGTGGTGATTCATTTGATCGCTATAAAGAATATAGGTATTGTTTATCTGTGAATATTATTGGATTTGCATACTCTGCATTACAAGCATGTGATTTGACATGCCAACTTGCCACGGGGAAACGCTTAATCAGTCACCACCTTCGCAACCACTTTGATTTCTTCATGGATCAGGTGTCTTTCTGTTCTACCAGTACCCAAAAGTACTCACCAAAAAAAGGCTTAATATGA

>Glyma06g19450.4   sequence type=CDS   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAACAAATCGCAGTCGAAGAACTCCGAGTCGTCGACTCAGTTCGACTCGCCGCACTGGGACGGCACCGAGTCGCCGGAAAAATCGCCGGAGAAGCGCGACAACTCCGTGGCCATCGTGACCGTTGGCAAGCTCAAGCAGTTCACACCGGAGAAGCGCGCGGAGCACCGGGAACCGCCGGAAAATCCGCCGTCGGCGGCGGTGGTGATGTTCAACGACCAGGCGGCGGAGGAGGATCAGAGGACGGCGGAAAAGGCGGTTCCGGCGGTCGGCGGAGGAGAACGGAGATCAAGGTCGGCGGCGGCGGCGGAGGGGTGGAAGACGGACGAGACGGTGAGCAAGGCGGCGCTGGGGTTCCGGCTGAGCGAGGTGGTGGTGTGTCTGATTTCGTTTTCTGTTATGGCCGCAGATAAGACGCAAGGTTGGAGTGGTGATTCATTTGATCGCTATAAAGAATATAGGTATTGTTTATCTGTGAATATTATTGGATTTGCATACTCTGCATTACAAGCATGTGATTTGACATGCCAACTTGCCACGGGGAAACGCTTAATCAGTCACCACCTTCGCAACCACTTTGATTTCTTCATGGATCAGTACCCAAAAGTACTCACCAAAAAAAGGCTTAATATGACTGATGCAGCAATTTTAGGTTCTGGCATATCTTCTGATATCGTCATCATCGTCTGCAGCCACACGGGTTGA

Predicted protein sequences of Glyma06g19450

Limit To All Plant Sequences

>Glyma06g19450.1   sequence type=predicted peptide   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKSQSKNSESSTQFDSPHWDGTESPEKSPEKRDNSVAIVTVGKLKQFTPEKRAEHREPPENPPSAAVVMFNDQAAEEDQRTAEKAVPAVGGGERRSRSAAAAEGWKTDETVSKAALGFRLSEVVVCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNIIGFAYSALQACDLTCQLATGKRLISHHLRNHFDFFMDQVLAYLLISSSSSAATRVEDWILNWGKDEFTEMATASIGMAFLAFVAFAISSLISGYTLCNRSSM*

>Glyma06g19450.2   sequence type=predicted peptide   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HRSSVFFFSLSFIFPPPKQTFSFSICFLFAFIVFFSFTLVPFKFLATQTNANGKRRIATHESHTSAMNKSQSKNSESSTQFDSPHWDGTESPEKSPEKRDNSVAIVTVGKLKQFTPEKRAEHREPPENPPSAAVVMFNDQAAEEDQRTAEKAVPAVGGGERRSRSAAAAEGWKTDETVSKAALGFRLSEVVVCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNIIGFAYSALQACDLTCQLATGKRLISHHLRNHFDFFMDQASCLHFALHHSVSMSMLLNSQNMRFCELNQ*

>Glyma06g19450.3   sequence type=predicted peptide   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
HRSSVFFFSLSFIFPPPKQTFSFSICFLFAFIVFFSFTLVPFKFLATQTNANGKRRIATHESHTSAMNKSQSKNSESSTQFDSPHWDGTESPEKSPEKRDNSVAIVTVGKLKQFTPEKRAEHREPPENPPSAAVVMFNDQAAEEDQRTAEKAVPAVGGGERRSRSAAAAEGWKTDETVSKAALGFRLSEVVVCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNIIGFAYSALQACDLTCQLATGKRLISHHLRNHFDFFMDQVSFCSTSTQKYSPKKGLI*

>Glyma06g19450.4   sequence type=predicted peptide   gene model=Glyma06g19450   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNKSQSKNSESSTQFDSPHWDGTESPEKSPEKRDNSVAIVTVGKLKQFTPEKRAEHREPPENPPSAAVVMFNDQAAEEDQRTAEKAVPAVGGGERRSRSAAAAEGWKTDETVSKAALGFRLSEVVVCLISFSVMAADKTQGWSGDSFDRYKEYRYCLSVNIIGFAYSALQACDLTCQLATGKRLISHHLRNHFDFFMDQYPKVLTKKRLNMTDAAILGSGISSDIVIIVCSHTG*

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