Glyma06g19035 - SoyBase

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Report for Sequence Feature Glyma06g19035

Feature Type:	gene_model
Chromosome:	Gm06
Start:	15269251
stop:	15275230
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g19035

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C6T4I1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6T4I1_SOYBN	SoyBase	E_val: 1.00E-121	ISS

Expression Patterns of Glyma06g19035

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g19035 not represented in the dataset	Glyma06g19035 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g19035

Paralog	Evidence	Comments
Glyma04g35900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g19035 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g180500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g19035

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g19035

Limit To All Plant Sequences

>Glyma06g19035.2   sequence type=transcript   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGGTGGTGACTCTGACAAAGTATGTTTTTGTTGCTGTTGTAACTTGTGTGATAGTATCACAAGTGAAACTGAAGCGAAATCATCCCAATTTGCAAATGCCTAAAACCTGAATTTGGAAGAAAGAAGATATAAATAAAATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCACGCTCCGGCAACACCTCCCCCAACAACCAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGATCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAATGGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGCTTGACTTGTTACAGGTCATATGCAGATCCTGTAGTAGGTTTTGAAGACCAATCCAGCAATGGATCAACTCCACCAGCAGATTCCCAAGCTAACATCCCCAATGGGAAACATGCGGTGAAGAAGAACTGAAATAATGTGCCTTGAGAAGCATCATCAGTGCATGACATCTTAGAAAGCTTAACGCAAATTCAGGAACTTGTGACTGAAAAGATGGTCATGGTCTCAACCATCAAATTCCTAGCGTAAAACAGATGGTTTTTTGGGGTCATAATTACGTGTTAAGAGGCGCTATTTATACGATTCAGTATACTGATTGCAAAGTGCATCATTGCCACCCACTAACTTATTCTGCATTTCACATTCATTCTAGTTGTTTAAGTACTATAAAGAAAGTCCATGATATAATACTGTCTCTGTTTCTTTTTAATTATCAGATTTTTTATTTATTTATCTGTCATGTACAAAGTTTTTCTATTTATCTGTCATTTATAAAATTTGAGATCACATTAATTATTTGTTTATCAATATTTTAATTAATTTACAAATA

>Glyma06g19035.3   sequence type=transcript   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTGAGGACCGAACACAACACCAGTTAGCAGTTAGCGCAACCTTGTGGGCCAGGAGAAGAGTATCACAAGTGAAACTGAAGCGAAATCATCCCAATTTGCAAATGCCTAAAACCTGAATTTGGAAGAAAGAAGATATAAATAAAATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCACGCTCCGGCAACACCTCCCCCAACAACCAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGATCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAATGGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGCTTGACTTGTTACAGGTCATATGCAGATCCTGTAGTAGGTTTTGAAGACCAATCCAGCAATGGATCAACTCCACCAGCAGATTCCCAAGCTAACATCCCCAATGGGAAACATGCGGTGAAGAAGAACTGAAATAATGTGCCTTGAGAAGCATCATCAGTGCATGACATCTTAGAAAGCTTAACGCAAATTCAGGAACTTGTGACTGAAAAGATGGTCATGGTCTCAACCATCAAATTCCTAGCGTAAAACAGATGGTTTTTTGGGGTCATAATTACGTGTTAAGAGGCGCTATTTATACGATTCAGTATACTGATTGCAAAGTGCATCATTGCCACCCACTAACTTATTCTGCATTTCACATTCATTCTAGTTGTTTAAGTACTATAAAGAAAGTCCATGATATAATACTGTCTCTGTTTCTTTTTAATTATCAGATTTTTTATTTATTTATCTGTCATGTACAAAGTTTTTCTATTTATCTGTCATTTATAAAATTTGAGATCACATTAATT

>Glyma06g19035.4   sequence type=transcript   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGGGGTGGTGACTCTGACAAAGTATGTTTTTGTTGCTGTTGTAACTTGTGTGATAGTATCACAAGTGAAACTGAAGCGAAATCATCCCAATTTGCAAATGCCTAAAACCTGAATTTGGAAGAAAGAAGATATAAATAAAATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCACGCTCCGGCAACACCTCCCCCAACAACCAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGATCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAATGGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGATCCTGTAGTAGGTTTTGAAGACCAATCCAGCAATGGATCAACTCCACCAGCAGATTCCCAAGCTAACATCCCCAATGGGAAACATGCGGTGAAGAAGAACTGAAATAATGTGCCTTGAGAAGCATCATCAGTGCATGACATCTTAGAAAGCTTAACGCAAATTCAGGAACTTGTGACTGAAAAGATGGTCATGGTCTCAACCATCAAATTCCTAGCGTAAAACAGATGGTTTTTTGGGGTCATAATTACGTGTTAAGAGGCGCTATTTATACGATTCAGTATACTGATTGCAAAGTGCATCATTGCCACCCACTAACTTATTCTGCATTTCACATTCATTCTAGTTGTTTAAGTACTATAAAGAAAGTCCATGATATAATACTGTCTCTGTTTCTTTTTAATTATCAGATTTTTTATTTATTTATCTGTCATGTACAAAGTTTTTCTATTTATCTGTCATTTATAAAATTTGAGATCACATTAATTATTTGTTTATCAATATTTTAATTAATTTACAAATA

Coding sequences of Glyma06g19035

Limit To All Plant Sequences

>Glyma06g19035.1   sequence type=CDS   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCACGCTCCGGCAACACCTCCCCCAACAACCAGGTGAGTCAATTCACGCTATTCAACTTCACGCATGCACACGCGCGCCTCTATGCTAATTATTCTCAGTTTTTCCCCCCTAAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGATCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAATGGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGCTTGACTTGTTACAGGTCATATGCAGATCCTGTAGTAGGTTTTGAAGACCAATCCAGCAATGGATCAACTCCACCAGCAGATTCCCAAGCTAACATCCCCAATGGGAAACATGCGGTGAAGAAGAACTGA

>Glyma06g19035.2   sequence type=CDS   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCACGCTCCGGCAACACCTCCCCCAACAACCAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGATCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAATGGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGCTTGACTTGTTACAGGTCATATGCAGATCCTGTAGTAGGTTTTGAAGACCAATCCAGCAATGGATCAACTCCACCAGCAGATTCCCAAGCTAACATCCCCAATGGGAAACATGCGGTGAAGAAGAACTGA

>Glyma06g19035.3   sequence type=CDS   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCACGCTCCGGCAACACCTCCCCCAACAACCAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGATCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAATGGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGCTTGACTTGTTACAGGTCATATGCAGATCCTGTAGTAGGTTTTGAAGACCAATCCAGCAATGGATCAACTCCACCAGCAGATTCCCAAGCTAACATCCCCAATGGGAAACATGCGGTGAAGAAGAACTGA

>Glyma06g19035.4   sequence type=CDS   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAGCGTGCCTTCACCTTCTTCTTCTCCTCCTCCTCCTCCTCCACGCTCCGGCAACACCTCCCCCAACAACCAGTTGGAAGCTGTTACAAATAATGGGGTTTCTCACGTCGATGATAAAAAACCTAACTTCACCGATGGTCTTGATCACTTGGATAGTCCACAGTGCATTGAGAGGTTCAGAAAATATGATCATGATTATGCTCATCGTTTGCTGGCAAAATATTTCTCTAACAAAAACTTCAATGGAGGCAACATATTTGATTTGGAAATAACAGTAAATGATGAAATCATAAAGTCAAGCAGATCCTGTAGTAGGTTTTGA

Predicted protein sequences of Glyma06g19035

Limit To All Plant Sequences

>Glyma06g19035.1   sequence type=predicted peptide   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPSPSSSPPPPPPRSGNTSPNNQVSQFTLFNFTHAHARLYANYSQFFPPKLEAVTNNGVSHVDDKKPNFTDGLDHLDSPQCIERFRKYDHDYAHRLLAKYFSNKNFNGGNIFDLEITVNDEIIKSSSLTCYRSYADPVVGFEDQSSNGSTPPADSQANIPNGKHAVKKN*

>Glyma06g19035.2   sequence type=predicted peptide   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPSPSSSPPPPPPRSGNTSPNNQLEAVTNNGVSHVDDKKPNFTDGLDHLDSPQCIERFRKYDHDYAHRLLAKYFSNKNFNGGNIFDLEITVNDEIIKSSSLTCYRSYADPVVGFEDQSSNGSTPPADSQANIPNGKHAVKKN*

>Glyma06g19035.3   sequence type=predicted peptide   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPSPSSSPPPPPPRSGNTSPNNQLEAVTNNGVSHVDDKKPNFTDGLDHLDSPQCIERFRKYDHDYAHRLLAKYFSNKNFNGGNIFDLEITVNDEIIKSSSLTCYRSYADPVVGFEDQSSNGSTPPADSQANIPNGKHAVKKN*

>Glyma06g19035.4   sequence type=predicted peptide   gene model=Glyma06g19035   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASVPSPSSSPPPPPPRSGNTSPNNQLEAVTNNGVSHVDDKKPNFTDGLDHLDSPQCIERFRKYDHDYAHRLLAKYFSNKNFNGGNIFDLEITVNDEIIKSSRSCSRF*

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