Glyma06g19000 - SoyBase

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Report for Sequence Feature Glyma06g19000

Feature Type:	gene_model
Chromosome:	Gm06
Start:	15230602
stop:	15235616
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g19000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G03340	AT	Annotation by Michelle Graham. TAIR10: ATPase, AAA-type, CDC48 protein \| chr5:810091-813133 REVERSE LENGTH=810	SoyBase	E_val: 0	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0730	KOG	AAA+-type ATPase	JGI		ISS
PTHR23077	Panther	AAA-FAMILY ATPASE	JGI		ISS
PTHR23077:SF18	Panther	CELL DIVISION CONTROL PROTEIN 48 AAA FAMILY PROTEIN (TRANSITIONAL ENDOPLASMIC RETICULUM ATPASE)	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
PF02359	PFAM	Cell division protein 48 (CDC48), N-terminal domain	JGI		ISS
PF02933	PFAM	Cell division protein 48 (CDC48), domain 2	JGI		ISS
UniRef100_I1JXA0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JXA0_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_P54774	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cell division cycle protein 48 homolog n=2 Tax=Glycine max RepID=CDC48_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g19000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g19000

Paralog	Evidence	Comments
Glyma04g35950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g19000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g180000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g19000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g19000

Limit To All Plant Sequences

>Glyma06g19000.1   sequence type=CDS   gene model=Glyma06g19000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGATCCAACCTCATCTAACCCTGATAAGGATCAATCCTCTTCGGACTCGAAATGTGAAAAGAAGGATTATTCCACATCAATATTAGAACGCAAGAAGTCTCCTAACCGACTTGTTGTTGATGAAGCAATTAATGATGATAATTCCGTGGTTACTTTGCACCCTGAAACAATGGAGAAGCTTCATTTTTTCCGGGGGGACACTGTTCTGATAAAGGGAAAGAAGCGAAGGGACACAATTTGTGTTGTTCTTGCTGATGAACAATGTGATGAACCAAAAATAAGGATGAATAAGGTTGTTCGGGCTAATCTTAGAGTGCGACTTGGCGATGTTGTCTCTGTCCATCAATGTCCAGATGTGAAGTACGGGAAACGAGTTCACATCCTTCCAATCGATGACACCATTGAGGGTGTAACTGGCAACTTGTTTGATGCATATTTGAAGCCATACTTTATGGAGTCATACCGGCCAGTGAGGAAAGGGGACTTGTTCCTTGTTCGGGGTGGGATGCGCAGTGTTGAATTCAAGGTAATAGAGACTGATCCTGGTGAATACTGTGTTGTGGCACCTGATGCTGAAATCTTCTGTGAGGGAGAGCCAATCAAGCGGGAAGATGAAGAGAGACTAAATGAAATTGGCTATGATGATGTCGGTGGTGTTAGGAAACAAATGGCTCAAATTCGTGAGCTGGTAGAACTTCCACTTAGACATCCGCAGCTCTTCAAATCAATTGGAGTTAAGCCCCCAAAAGGAATCTTGCTTTATGGACCACCTGGTTCAGGAAAGACTCTGATTGCAAGAGCAGTTGCTAATGAGACTGGTGCATTCTTTTTTTTGATTAATGGACCAGAAATCATGTCGAAGCTGGCCGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCTGAAAAGAATTCCCCTTCTATCATTTTTATTGATGAATTAGACTCGATTGCTCCAAAGAGAGAAAAGACACATGGTGAAGTGGAGAGGCGTATCGTTTCACAACTTTTGACTCTTATGGATGGCCTCAAGAGCCGATCACACGTTGTCGTTATTGGAGCCACAAATAGGCCAAATAGTATTGATCCCGCTTTGAGAAGGTTTGGAAGGTTTGATCGGGAGATTGACATTGGTGTACCAGATGAAGTTGGAAGGTTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTTTCAGACAATGTTGATCTTGAAAAAGTTGGCAGAGATACTCATGGTTATGTTGGATCAGATCTTGCTGCTCTTTGCACAGAGGCTGCACTACAGTGTATCCGGGAGAAAATGGATGTGATTGACTTAGAGGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACCAATGAACACTTTCAAACTGCCTTAAGTTCTTCAAACCCATCTGCCCTGCGTGAAACGGTTGTGGAGGTTCCAAATGTTTCCTGGGATGATATTGGAGGCTTAGAGAATGTCAAGAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCCAAAGGTGTTCTCTTTTATGGACCTCCTGGCTGTGGTAAAACCCTGCTTGCAAAAGCAATTGCTAATGAGTGCCAAGCCAACTTTATAAGTGTTAAGGGACCTGAGTTGCTGACAATGTGGTTTGGTGAAAGTGAGGCAAATGTTCGCGAGATATTTGACAAGGCTCGGCAGTCAGCTCCATGCGTGCTTTTCTTTGATGAACTTGACTCTATTGCAACTCAGCGAGGCAGTTCTGTAGGGGATGCTGGTGGTGCTGCAGATAGGGTGTTGAACCAACTGTTAACAGAAATGGATGGTATGACAGCTAAGAAAACAGTTTTCATCATTGGGGCAACAAACAGACCAGACATTATAGACCCTGCATTGCTCAGGCCGGGACGTCTGGATCAATTGATTTACATCCCTTTACCGGACGAAAGTTCACGTCTTCAAATCTTCAAGGCATGCTTGAGGAAGTCACCGATCTCAAAGGATGTTGACCTTGCAGCTCTTGCCCGTTTTACTCATGGATTCAGTGGTGCAGACATCACTGAAATTTGTCAACGAGCGTGCAAATATGCCATTAGGGAAGATATTGAAAAGGATATTGAGAAGGAGAGAAGAAAAAGAGAAAACCCTGAAGCCATGGAAGAAGATGACACTGATGAGGTCCCTGAGATAAAGCCTGCCCACTTTGAAGAGTCTATGAAGTTTGCTCGCCGGAGTGTCAGCGACGCTGACATCAGGAAATACCAGCTCTTTGCTCAGACCTTGCAACAGTCTCGGGGATTCGGATCCGAGTTTCGGTTTCCAGATCGAAACGAGAACACTGCAGCAGATGCCTCAGACCCTTTCTCATCTGTTACAGCTGAGGGAGATGATGATTTGTACAGTTAG

Predicted protein sequences of Glyma06g19000

Limit To All Plant Sequences

>Glyma06g19000.1   sequence type=predicted peptide   gene model=Glyma06g19000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MADPTSSNPDKDQSSSDSKCEKKDYSTSILERKKSPNRLVVDEAINDDNSVVTLHPETMEKLHFFRGDTVLIKGKKRRDTICVVLADEQCDEPKIRMNKVVRANLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMESYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDAEIFCEGEPIKREDEERLNEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRSHVVVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDNVDLEKVGRDTHGYVGSDLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALSSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPISKDVDLAALARFTHGFSGADITEICQRACKYAIREDIEKDIEKERRKRENPEAMEEDDTDEVPEIKPAHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFPDRNENTAADASDPFSSVTAEGDDDLYS*

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