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Report for Sequence Feature Glyma06g18800

Feature Type:gene_model
Chromosome:Gm06
Start:15052728
stop:15053811
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g18800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70600AT Annotation by Michelle Graham. TAIR10: Ribosomal protein L18e/L15 superfamily protein | chr1:26621168-26621608 REVERSE LENGTH=146 SoyBaseE_val: 1.00E-88ISS
GO:0006412GO-bp Annotation by Michelle Graham. GO Biological Process: translation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005840GO-cc Annotation by Michelle Graham. GO Cellular Compartment: ribosome SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0022625GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic large ribosomal subunit SoyBaseN/AISS
GO:0022626GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosolic ribosome SoyBaseN/AISS
GO:0003735GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome SoyBaseN/AISS
KOG1742 KOG 60s ribosomal protein L15/L27 JGI ISS
PTHR11721Panther 60S RIBOSOMAL PROTEIN L27A JGI ISS
PF00828PFAM Ribosomal protein L18e/L15 JGI ISS
UniRef100_B6VC54UniRef Annotation by Michelle Graham. Most informative UniRef hit: 60S ribosomal protein L27A n=1 Tax=Vernicia fordii RepID=B6VC54_VERFO SoyBaseE_val: 5.00E-93ISS
UniRef100_C6SYJ4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYJ4_SOYBN SoyBaseE_val: 7.00E-101ISS

Expression Patterns of Glyma06g18800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18800
ParalogEvidenceComments
Glyma04g36140 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18800 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g178300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g18800
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g18800
>Glyma06g18800.1   sequence type=CDS   gene model=Glyma06g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACAACACGCTTCAAGAAGAACAGGAAGAAGAGGGGCCACGTCAGCGCTGGCCACGGTCGAATCGGAAAGCACAGGAAGCACCCTGGAGGACGCGGTAACGCCGGAGGCATGCACCACCACAGGATCCTCTTCGACAAATACCACCCTGGGTTCTTCGGCAAGGTAGGAATGCGCTATTTTCACAAGCTTCGCAACAAATTCTACTCTCCGATCCTCAACATCGACAAGCTGTGGTCCCTGGTCCCGCAAGAAGTGAAGGACAAGGCCTCCAAGGAGAACAAGGCGCCGCTCATCGACGTCACGCAGTTCGGGTACTTTAAGGTTCTCGGAAAGGGCGTTTTGCCGCAGAACCAGCCCGTTGTGGTCAAGGCCAAGCTTATTTCCAAGATCGCTGAGAAGAAGATCAAAGAGGCTGGCGGCGCCGTTGTTCTCACCGCTTGA
Predicted protein sequences of Glyma06g18800
>Glyma06g18800.1   sequence type=predicted peptide   gene model=Glyma06g18800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGFFGKVGMRYFHKLRNKFYSPILNIDKLWSLVPQEVKDKASKENKAPLIDVTQFGYFKVLGKGVLPQNQPVVVKAKLISKIAEKKIKEAGGAVVLTA*






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