SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24710 | AT | Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr4:12745752-12748995 REVERSE LENGTH=475 | SoyBase | E_val: 0 | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0744 | KOG | AAA+-type ATPase | JGI | ISS | |
| PTHR23077 | Panther | AAA-FAMILY ATPASE | JGI | ISS | |
| PTHR23077:SF10 | Panther | THYROID HORMONE RECEPTOR INTERACTOR 13 | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| UniRef100_G7J4A8 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Thyroid receptor-interacting protein n=1 Tax=Medicago truncatula RepID=G7J4A8_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1KCB2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCB2_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g18700 not represented in the dataset |
Glyma06g18700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g36240 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g177400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g18700.1 sequence type=CDS gene model=Glyma06g18700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGTGCTCACATGGAGACGGAGCTCACAACCGACCAAAACGGCGCTGCTTACCAACACTCACTTCCCGTTCCCGAGGACAAAGTTCTTGTCCCTGTCGAGGTAACCCTAAAACCTTCAAGCACAGCTAAAATCGACGATGTTCGTTCCGCCGTTGAGGGGATGTTGGAAAAGAGGAGTTTGAGCTATAACGATGGACCGGTTCCAGTGCCTCTTGATGACGCGTTTCTCGCAGATAACGTGCAAAGAATTTGCGTTTGCGGATGTGATACTGATGAAGGGATGCACAATGATAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGTGAGGAAGGGCCATGTGAGGATATAAGCTGTGATGGCCAATCTTCCAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTAAAGCAACGGTTATTACGATATGCAGCAAGTGCTTTGCTCTTTACTGAAAAAGGGGTTGATCCATTCCTTGTTTCATGGAATCGCATCATTTTGTTACATGGACCACCTGGGACTGGAAAGACATCTTTATGTAAAGCATTAGCACAGAAATTATCAATTCGATTCAATTTGAGATACCCACAGGCTCAGCTTGTTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTAGCAAAACTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAGCAATCTAGTATTTGTATTGATCGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCTGATTCTATTCGGGTTGTCAATGCGTTACTAACTCAGATGGACAAGTTAAAATCATCTCCAAATGTGATAATTCTAACCACGTCCAACATAACTGCGGCTATTGATATTGCTTTTGTCGATCGAGCCGATATCAAAGCATATGTTGGTCCCCCAACTCTTCAAGCTCGGTATGAAATATTAAGGTCCTGCTTACAGGAACTGATGCGTACAGGGATATTGACTAGTTTACAGGATTGTAAGAACGTCATGTTTCCAAATTATGCTAGTGCGAAGGATAGGTTGAACACTCCAGATTTTCATGAGGATGCTACATTCATGCAATTGTGCAAACAACTACTTGAAACTGCAGAGGCATGTGAGGGAATGAGTGGAAGGTCGTTGAGAAAGCTTCCATTTTTGGCACATGCTGCACTTGCAAATCCTTTTGAATGCAACCCTATTAAGTTCTTATGTACAATGATAGAAACAGCGAAGAGGGAGCGTTCTGAGCTTCCTGACTAA
>Glyma06g18700.1 sequence type=predicted peptide gene model=Glyma06g18700 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSAHMETELTTDQNGAAYQHSLPVPEDKVLVPVEVTLKPSSTAKIDDVRSAVEGMLEKRSLSYNDGPVPVPLDDAFLADNVQRICVCGCDTDEGMHNDNVLLFWQVKPVVHVFQLSEEGPCEDISCDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNLRYPQAQLVEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRTGILTSLQDCKNVMFPNYASAKDRLNTPDFHEDATFMQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPFECNPIKFLCTMIETAKRERSELPD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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