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Report for Sequence Feature Glyma06g18650

Feature Type:gene_model
Chromosome:Gm06
Start:14934219
stop:14938716
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g18650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G56280AT Annotation by Michelle Graham. TAIR10: drought-induced 19 | chr1:21073366-21074725 REVERSE LENGTH=200 SoyBaseE_val: 3.00E-11ISS
GO:0006623GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole SoyBaseN/AISS
GO:0009414GO-bp Annotation by Michelle Graham. GO Biological Process: response to water deprivation SoyBaseN/AISS
GO:0048193GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF05605PFAM Drought induced 19 protein (Di19) JGI ISS
UniRef100_I1KCA9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KCA9_SOYBN SoyBaseE_val: 3.00E-170ISS
UniRef100_Q5JME8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein DEHYDRATION-INDUCED 19 homolog 5 n=4 Tax=Oryza RepID=DI195_ORYSJ SoyBaseE_val: 5.00E-10ISS

Expression Patterns of Glyma06g18650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18650
ParalogEvidenceComments
Glyma04g36246 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g177000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g18650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g18650
>Glyma06g18650.1   sequence type=CDS   gene model=Glyma06g18650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAAGGAGTGTGATTCACCAAAGGAACAGCAGCCTCGAGTTCTTGCCATAAGGAGGAATCTGGAGAAACTGAAGCTAGAATTGCACAACATCAACCGAGGAATTGACTCCCATGTACAGGGGAAGAGAGTGAATGGAACTTGGGGGGCTTCAAGATACCTTATTGGAGAGGAAGATGATACCGAATCTGATGGAGATGAGGATGATGATGCTCAATCCCTTCTTCGATGTCCTTCCTGTGATTTTGAGATTGATTTTTCTTCTCTGCGTATCCATTTGGAAGAGATGCACTGCTATGACCCAAAAAATATGCTATGTCCTGTGTGTGATGAAACATTAGGGGAGGATGCAATCAGGGTTGCACAGAATTCAAGTGCACAAAAGAGAGCTTGGAAGTCTGACAAATCTAGCATCTCGTCGGGTGATTCGGTAGTGCTTGAAAAGAAACTTCCTGACAGGGGAAGCAAACACGAACCAGTTCCTGATCCACTTTTGTCACCGTTTGTCCGCAATGTGTCTGTTCGAAACTCCCATGGTATCCATCCTGGTGAAGGTTCCTCCAGGAATGCCGCATACATTTTCAATGCAAAAGGCTCTAGGACAGATGCACCCCAGGATTCAGCTGATGAGCAGGATATTGAAGAGAGAAGGCTGAGGGCATCTTTTGTTCAGGAGTTGGTATCATCAACTTTAATCTAG
Predicted protein sequences of Glyma06g18650
>Glyma06g18650.1   sequence type=predicted peptide   gene model=Glyma06g18650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTKECDSPKEQQPRVLAIRRNLEKLKLELHNINRGIDSHVQGKRVNGTWGASRYLIGEEDDTESDGDEDDDAQSLLRCPSCDFEIDFSSLRIHLEEMHCYDPKNMLCPVCDETLGEDAIRVAQNSSAQKRAWKSDKSSISSGDSVVLEKKLPDRGSKHEPVPDPLLSPFVRNVSVRNSHGIHPGEGSSRNAAYIFNAKGSRTDAPQDSADEQDIEERRLRASFVQELVSSTLI*






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