Glyma06g18620 - SoyBase

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Report for Sequence Feature Glyma06g18620

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14903206
stop:	14905080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g18620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G12690	AT	Annotation by Michelle Graham. TAIR10: Plant protein of unknown function (DUF868) \| chr4:7480896-7481753 FORWARD LENGTH=285	SoyBase	E_val: 2.00E-84	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009750	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05910	PFAM	Plant protein of unknown function (DUF868)	JGI		ISS
UniRef100_B9SVM2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2c, putative n=1 Tax=Ricinus communis RepID=B9SVM2_RICCO	SoyBase	E_val: 3.00E-127	ISS
UniRef100_I1KCA6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KCA6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g18620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18620

Paralog	Evidence	Comments
Glyma04g36270	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g176700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g18620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g18620

Limit To All Plant Sequences

>Glyma06g18620.4   sequence type=transcript   gene model=Glyma06g18620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGAAAGTTGTGCATAATATTAAAAGGGTTGTTTCTTCATTAACTCTCACTCAGTGCCAGGCCATATGCCAGCCGGTTTGGAAATATATAACTTTTCTTTTCCAAACCCCATTAAAACACTTCTGGCACCACCTTGCGTTCACACACAGCTTGTCACTCAGAAGTGAGATCTCTCTCATTCACTCATCTCTCACTTCCCCCACCCCCACCCAATCCACTCTCATCCCTCTCCTCATGATAGGTAACTGACTCAACATCAACAACATTTGTTATTGATCTATCTGCCTCAAGTAAGATTGTCCCTCTTCTTCTGTAGAGAATACTTGTGATCTCTCTGAGAGCTATAGCGACAATGCAAGACGCAATTGGGATTCCAGCATGCTTCTCTTCTGCTCTGAAGTCAAGTGATGATCACACAACCGTGACTCGTTTAGGCCAGAGCGTGCACATGTCCCTGTACAGAACAAAGATTGCTGACCAGTGCCGCTTGATCACCATCACATGGTGCAAAAACGTGATGCTCCATGGGCTTTCAGTATCAGTGGAAGGCCCAGAAGGAGAGGCCCAATACTGCTGCAAGGTGGAGCTGAAACCATGGTACTTTTGGAGAAAACAAGGTTCCAAGCACTTTATCGTACACGGTGACAAAGCCGTTGACGTTTTCTGGGACCTTAAAGCCGCGAAATTCCACGGCGAGACAGAACCAACCTCGGAGTACTACGTTGCCGTGGTGTGCGACAAAGAGGTCGTGCTTCTGATCGGTGATTTGAAAAAAGAAGCTTACAGAAGAACCGGGTGCAGACCAGCGCTTATTGACCCAATTTTGGTTTCGAAAAAAGAACACATTTTTGGGAAGAGAAAGTTCTCTACAAGAGCCAGGTTTCACGAAAAAGGTAGGTGCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAACAACAACATTGGAGGAGATGGAGATAAGATTCAGCCAGAGATGGAGATAAAATTAGATGGGCACGTGGTGATCCACGTGAAGCGCTTGCAATGGAAGTTTAGAGGGAACGAGTCGATTCATCTCAACAAGATGAGAGTGGAGGTGTATTGGGATGTTCACGATTGGCTCTTTAGTCCTGGTTTGAAACATGCTTTGTTTATTTTTAAGCCTGTTTTGTCATCATCCAATATTTCTCTGTCATCATCGCATTCAATTTCATCATCTTCACCACCGTTGTCATCATCATCCACACCGTTATCTACTCAAACGGGGAGTTCTGGGTCGCTGGAAGGGTTCAGTGTCAGCGAGTCTTCAGAGTTTTGCTTGTTTCTATATGCTTGGAAGGTTGAGCAGTGAAAATTGAAGAAAAAGGATCGTGCCATGGTGTCAGCGTAACGGTATTATTATTAATATTGTGATGGACTTATTGTATCATCTAAGGGGAAAAATAACGATGGGAAATGACTTGGTGGCTCTTCAAGTTATGGAGAAAGAATGCAATGGTAATGATGATGACGTTGAGAATGGTTTGGGACATGAAAGAAAGAGAGAGAGATTTGGATTGAGAAGGGTGGTGAGGCCCAGAGAGTTAGTTACAGCTGGGGTTGAACAATGGCGCGCATAAATGGACAAAAACGGATTGAATCGCACACACATGCCCAATAATTCTCCATGCTTCCACGTCATTCTACATCTGTCATCTACTGCTTTGGAAATTCTTTATCTCTCTCGATCTGATCTTGAGAAGCGAACTATGTATATGTAATATATGTTTTTTTTTTCTATAAATATTTATCAACTAATTAATGGTGCATGTTATGTAAAGCTTATATAACATAAATATATATAGACATTAGATTATTGAACTGAATGTCTGTATTTGCCCATGAAAGGCTCTTC

Coding sequences of Glyma06g18620

Limit To All Plant Sequences

>Glyma06g18620.3   sequence type=CDS   gene model=Glyma06g18620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGACGCAATTGGGATTCCAGCATGCTTCTCTTCTGCTCTGAAGTCAAGTGATGATCACACAACCGTGACTCGTTTAGGCCAGAGCGTGCACATGTCCCTGTACAGAACAAAGATTGCTGACCAGTGCCGCTTGATCACCATCACATGGTGCAAAAACGTGATGCTCCATGGGCTTTCAGTATCAGTGGAAGGCCCAGAAGGAGAGGCCCAATACTGCTGCAAGGTGGAGCTGAAACCATGGTACTTTTGGAGAAAACAAGGTTCCAAGCACTTTATCGTACACGGTGACAAAGCCGTTGACGTTTTCTGGGACCTTAAAGCCGCGAAATTCCACGGCGAGACAGAACCAACCTCGGAGTACTACGTTGCCGTGGTGTGCGACAAAGAGGTCGTGCTTCTGATCGGTGATTTGAAAAAAGAAGCTTACAGAAGAACCGGGTGCAGACCAGCGCTTATTGACCCAATTTTGGTTTCGAAAAAAGAACACATTTTTGGGAAGAGAAAGTTCTCTACAAGAGCCAGGTTTCACGAAAAAGGTAGGTGCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAACAACAACATTGGAGGAGATGGAGATAAGATTCAGCCAGAGATGGAGATAAAATTAGATGGGCACGTGGTGATCCACGTGAAGCGCTTGCAATGGAAGTTTAGAGGGAACGAGTCGATTCATCTCAACAAGATGAGAGTGGAGGTGTATTGGGATGTTCACGATTGGCTCTTTAGTCCTGGTTTGAAACATGCTTTGTTTATTTTTAAGCCTGTTTTGTCATCATCCAATATTTCTCTGTCATCATCGCATTCAATTTCATCATCTTCACCACCGTTGTCATCATCATCCACACCGTTATCTACTCAAACGGGGAGTTCTGGGTCGCTGGAAGGGTTCAGTGTCAGCGAGTCTTCAGAGTTTTGCTTGTTTCTATATGCTTGGAAGGTTGAGCAGTGA

>Glyma06g18620.4   sequence type=CDS   gene model=Glyma06g18620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAAGACGCAATTGGGATTCCAGCATGCTTCTCTTCTGCTCTGAAGTCAAGTGATGATCACACAACCGTGACTCGTTTAGGCCAGAGCGTGCACATGTCCCTGTACAGAACAAAGATTGCTGACCAGTGCCGCTTGATCACCATCACATGGTGCAAAAACGTGATGCTCCATGGGCTTTCAGTATCAGTGGAAGGCCCAGAAGGAGAGGCCCAATACTGCTGCAAGGTGGAGCTGAAACCATGGTACTTTTGGAGAAAACAAGGTTCCAAGCACTTTATCGTACACGGTGACAAAGCCGTTGACGTTTTCTGGGACCTTAAAGCCGCGAAATTCCACGGCGAGACAGAACCAACCTCGGAGTACTACGTTGCCGTGGTGTGCGACAAAGAGGTCGTGCTTCTGATCGGTGATTTGAAAAAAGAAGCTTACAGAAGAACCGGGTGCAGACCAGCGCTTATTGACCCAATTTTGGTTTCGAAAAAAGAACACATTTTTGGGAAGAGAAAGTTCTCTACAAGAGCCAGGTTTCACGAAAAAGGTAGGTGCCATGAGATCTCAATAGAGTGCAAGAACAAGAGCAACAACAACATTGGAGGAGATGGAGATAAGATTCAGCCAGAGATGGAGATAAAATTAGATGGGCACGTGGTGATCCACGTGAAGCGCTTGCAATGGAAGTTTAGAGGGAACGAGTCGATTCATCTCAACAAGATGAGAGTGGAGGTGTATTGGGATGTTCACGATTGGCTCTTTAGTCCTGGTTTGAAACATGCTTTGTTTATTTTTAAGCCTGTTTTGTCATCATCCAATATTTCTCTGTCATCATCGCATTCAATTTCATCATCTTCACCACCGTTGTCATCATCATCCACACCGTTATCTACTCAAACGGGGAGTTCTGGGTCGCTGGAAGGGTTCAGTGTCAGCGAGTCTTCAGAGTTTTGCTTGTTTCTATATGCTTGGAAGGTTGAGCAGTGA

Predicted protein sequences of Glyma06g18620

Limit To All Plant Sequences

>Glyma06g18620.3   sequence type=predicted peptide   gene model=Glyma06g18620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQDAIGIPACFSSALKSSDDHTTVTRLGQSVHMSLYRTKIADQCRLITITWCKNVMLHGLSVSVEGPEGEAQYCCKVELKPWYFWRKQGSKHFIVHGDKAVDVFWDLKAAKFHGETEPTSEYYVAVVCDKEVVLLIGDLKKEAYRRTGCRPALIDPILVSKKEHIFGKRKFSTRARFHEKGRCHEISIECKNKSNNNIGGDGDKIQPEMEIKLDGHVVIHVKRLQWKFRGNESIHLNKMRVEVYWDVHDWLFSPGLKHALFIFKPVLSSSNISLSSSHSISSSSPPLSSSSTPLSTQTGSSGSLEGFSVSESSEFCLFLYAWKVEQ*

>Glyma06g18620.4   sequence type=predicted peptide   gene model=Glyma06g18620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQDAIGIPACFSSALKSSDDHTTVTRLGQSVHMSLYRTKIADQCRLITITWCKNVMLHGLSVSVEGPEGEAQYCCKVELKPWYFWRKQGSKHFIVHGDKAVDVFWDLKAAKFHGETEPTSEYYVAVVCDKEVVLLIGDLKKEAYRRTGCRPALIDPILVSKKEHIFGKRKFSTRARFHEKGRCHEISIECKNKSNNNIGGDGDKIQPEMEIKLDGHVVIHVKRLQWKFRGNESIHLNKMRVEVYWDVHDWLFSPGLKHALFIFKPVLSSSNISLSSSHSISSSSPPLSSSSTPLSTQTGSSGSLEGFSVSESSEFCLFLYAWKVEQ*

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