SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G67960 | AT | Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:25480808-25484176 REVERSE LENGTH=624 | SoyBase | E_val: 0 | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0010183 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen tube guidance | SoyBase | N/A | ISS |
| GO:0035437 | GO-bp | Annotation by Michelle Graham. GO Biological Process: maintenance of protein localization in endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005788 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum lumen | SoyBase | N/A | ISS |
| KOG2490 | KOG | Predicted membrane protein | JGI | ISS | |
| PTHR13317 | Panther | UNCHARACTERIZED | JGI | ISS | |
| PTHR13317:SF4 | Panther | gb def: hypothetical protein, similar to yeast yer140w [schizosaccharomyces pombe] | JGI | ISS | |
| PF05346 | PFAM | Eukaryotic membrane protein family | JGI | ISS | |
| UniRef100_F4HVJ3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Protein POLLEN DEFECTIVE IN GUIDANCE 1 n=1 Tax=Arabidopsis thaliana RepID=POD1_ARATH | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI00023387A6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023387A6 related cluster n=1 Tax=unknown RepID=UPI00023387A6 | SoyBase | E_val: 0 | ISS |
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Glyma06g18580 not represented in the dataset |
Glyma06g18580 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g36330 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g176300 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g18580.1 sequence type=CDS gene model=Glyma06g18580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCGCTCCGAAACGACGGCAGAAAAATTTCCTTCGAGGTTCTCAGCGTCGAGGGCCAATCGGATCCAACGGAACGCAATCACAAGAAGCGCAGGCACCGCGCTTCGAAGAAGAAGAAGAAACTTCTCGATCGCGCCGGCGATTCCTTTGATCCGCATTCGGTGCCGTTGGAGAACGGAGGAGCATGTAACGGATTCGAGCTCGACGCTAGCAGGTACTGCTGCGGCGGCGGCGGAGGAAGCTTCGTCGTGTGCGAGGAGGTGCGCGAGGCGGAGAGTGTGTGCGCGGTTGCGGAGGCGCGTGAGGCGGAGAGTGAGGAAGCGACCGCCGTGCGCGGTGGCATGGAGGGGTTTAATTTTGGGGAATTGAGGCAGAGGAACGTGAATTGTGGGAGTTCGGAGGATATAGCGGCTTACGTGGTGGTGCGCGATGAGAAGGAGGATGGCGGTGTGAATGCGAGTCCGGTGGAGAAGCCGACGAACGAGCCTGATAGGAATGTGGTTAAGAAATTGGAGACTGTGGAATCGTTGGACTGGAAGCGTATCATGGCGGAAGATCCGAACTTTGTGTATTCAGTGGAGAAGTCCCCTGTATCATACTTTTTGGAGGAAATGCACAATGGAAATTCTTTACGCAGCACAACAACTCTTGGGAATGAGAAAGAACGAGAGAGAGTTTACGACACTATCTTCCGCCTGCCATGGAGATGTGAATTGCTTATAGATGTTGGCTTCTTTGTCTGCTTCGATTCATTTCTTTCGTTGTTAACTGTTATGCCAGCGAGGATCATGATGACTATTTGGAGGCTTCTAAAGACAAGGCAGTTCAAGAGGCTGTCTACAATGGAAGTTTCAGATTTTGGCTGTTTTCTTATTTTGAGTAGTGGAGTTGTTCTTTTGCAGCAAACAGATATCAGCTTAATATATCATATGATCCGTGGTCAAGGAACAATAAAATTATATGTGGTATACAATGTTTTAGAGATATTTGATAAATTATGTCAAAATTTTAATGGGGATGTGTTGCAAACATTATTTCTTTCTGCTGAAGGACTTGCAAATTGCCCCCCAGAAAGCATGAGATTCTGGATTTGGAGATTTGCTTCTGACCAAGCTTTAGCGGTGGCTGCTTCAATTGTTCATTCTTTTATCTTATTAGCTCAGGCAATCACTTTATCAACCTGTATAGTTGCTCACAACAACGCATTGTTGGCTTTGCTGGTGTCAAATAATTTTGCTGAGATCAAAAGCAATGTGTTTAAGCGATACAGCGAGGATAATGTTCACAGTTTAGTTTACTTTGATTCTGTAGAGAGATTCCACATTTCATCTTTTATCTTATTCGTTTTGGCTCAAAATATTCTAGAGGCAGAGGGTCCCTGGTTTGAAAGTTTTCTCATTAATATCCTCTTGGTTTATGTATCTGAAATGATTATTGATATTATCAAGCATTCATTCATTGCTAAATTCAATAACATTAAGCCCATCGCATACTCCGAGTTCCTTGAAGATCTATGCAAACAGACTCTAAATATGCAAACTAAGAGTGCAAAGAAAAACCTGACTTTTGTCCCCCTTGCTCCAGCATGTGTGGTTATTCGAGTTTTCACTCCAGTATATGCTGCAAACCTTCCTCCCAATCCCCTTCCATGGAGGCTTTTCTGGATTCTGCTTTTTTCAGCAATGACCTATGTCATGCTCACAAGCCTCAAGGTTCTCATTGGCATGGGACTACAGAAGCATGCCACATGGTATGTCAATCGTTGCAAAAAGAGGAAACATCATTTTCATGAAGATTAG
>Glyma06g18580.1 sequence type=predicted peptide gene model=Glyma06g18580 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MALRNDGRKISFEVLSVEGQSDPTERNHKKRRHRASKKKKKLLDRAGDSFDPHSVPLENGGACNGFELDASRYCCGGGGGSFVVCEEVREAESVCAVAEAREAESEEATAVRGGMEGFNFGELRQRNVNCGSSEDIAAYVVVRDEKEDGGVNASPVEKPTNEPDRNVVKKLETVESLDWKRIMAEDPNFVYSVEKSPVSYFLEEMHNGNSLRSTTTLGNEKERERVYDTIFRLPWRCELLIDVGFFVCFDSFLSLLTVMPARIMMTIWRLLKTRQFKRLSTMEVSDFGCFLILSSGVVLLQQTDISLIYHMIRGQGTIKLYVVYNVLEIFDKLCQNFNGDVLQTLFLSAEGLANCPPESMRFWIWRFASDQALAVAASIVHSFILLAQAITLSTCIVAHNNALLALLVSNNFAEIKSNVFKRYSEDNVHSLVYFDSVERFHISSFILFVLAQNILEAEGPWFESFLINILLVYVSEMIIDIIKHSFIAKFNNIKPIAYSEFLEDLCKQTLNMQTKSAKKNLTFVPLAPACVVIRVFTPVYAANLPPNPLPWRLFWILLFSAMTYVMLTSLKVLIGMGLQKHATWYVNRCKKRKHHFHED*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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