Glyma06g18530 - SoyBase

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Report for Sequence Feature Glyma06g18530

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14836875
stop:	14840677
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g18530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24740	AT	Annotation by Michelle Graham. TAIR10: FUS3-complementing gene 2 \| chr4:12754729-12757653 REVERSE LENGTH=427	SoyBase	E_val: 0	ISS
GO:0006397	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA processing	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0045727	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of translation	SoyBase	N/A	ISS
GO:0046777	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein autophosphorylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
KOG0671	KOG	LAMMER dual specificity kinases	JGI		ISS
PTHR24058	Panther	DUAL SPECIFICITY PROTEIN KINASE	JGI		ISS
PTHR24058:SF30	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
UniRef100_G7J475	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase AFC2 n=1 Tax=Medicago truncatula RepID=G7J475_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KC99	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC99_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g18530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18530

Paralog	Evidence	Comments
Glyma04g36360	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g175900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g18530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g18530

Limit To All Plant Sequences

>Glyma06g18530.2   sequence type=transcript   gene model=Glyma06g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAACAAGGAGCGACGCTAAGAGGACACGTGTACGGCCATATTTCCTCTCATCAGATTGAAGGGTGGTTAGAATTAGGGTTCTCTATCTGCAAAGCAAACCTTATCTTTTCACCTGAAACTTGCTTTTGTTCCCAATTTTCTCAAATTGCTTTCGGTTTTCGTTCTGATTCTGCAAAATCATGGAGATGGAGCGCATCGTTGAATTCCCTCACACATACATGGATCGACCCCCGAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGTCCCCAAGATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTCGCCATAAAAATTGTTCGTGGGATAAAGAAATATCGAGAGGCAGCCATGGTAGAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATTTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATACTTCTAGTTTCACCAGAGTATCTTAAAATTCCAGATTACAAGAGTACAACCAGATCACCAAGTTCCTTTTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGGTTGAATTATGCACTGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCCATGATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGACCGACATGCAGAGAAGTATGTCCGAAGGGGTAGATTGGACTGGCCAGAGGGTGCAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGGATGCTTTGAGGCATTCCTTCTTTACTAGAGATCAACTTAGGAGATGATTTTCATGTATTTGTAAACGATTGGTCTGTTTTTAAGTTTAAAGATCATTCGAGGGCAAATATGGCTGTAAGGAAGCCTATGTGCCATGTAAATAAATATTTGAATATCTTGGGCTAAACTAAAGCAAGTGAGGATGGTTATTCAGCAGCAGTTACACCTCAAAGCCTGTATCTCAAACGTTTTCTTAAAAAAAATAAAATAATTGTAGATGTTCTTTTACTAATCTGATGTCCGGTGGAAACAAACCCCGATATTACAACTCATGCAGAATTAATGTAGGAATTTTAAGTCGAAATTGGTGGAATTATCTACAAA

Coding sequences of Glyma06g18530

Limit To All Plant Sequences

>Glyma06g18530.1   sequence type=CDS   gene model=Glyma06g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATGGAGCGCATCGTTGAATTCCCTCACACATACATGGATCGACCCCCGAGAAAGAGAGCGCGTTTGGGCTGGGACATCGCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGAGAATATTTCAAGCTTTGCTCCTTCAGAACATCCCCCTAGTTCTCTGTTTAAGGGAGTTGCTCGAAATGGTTCTCCCCCATGGCGAGACGATGACAAAGATGGCCATTACATGTTTGAGCTTGGAGATAATTTAACTTCTCGCTATAAGATTCATGGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTCGCCATAAAAATTGTTCGTGGGATAAAGAAATATCGAGAGGCAGCCATGGTAGAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATTTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATACTTCTAGTTTCACCAGAGTATCTTAAAATTCCAGATTACAAGAGTACAACCAGATCACCAAGTTCCTTTTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGGTTGAATTATGCACTGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCCATGATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGACCGACATGCAGAGAAGTATGTCCGAAGGGGTAGATTGGACTGGCCAGAGGGTGCAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGGATGCTTTGAGGCATTCCTTCTTTACTAGAGATCAACTTAGGAGATGA

>Glyma06g18530.2   sequence type=CDS   gene model=Glyma06g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAGTGCTGGGACAGAGAAAGGAAGGAAATGGTCGCCATAAAAATTGTTCGTGGGATAAAGAAATATCGAGAGGCAGCCATGGTAGAAATTGAGGTACTGCAACAGCTTGGGAAACACGATAAAGGTAGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAGTTATCGTTCATTTCCCATTGATCTTGTCCGTGAGATTGGCTGGCAACTATTGGAATGTGTAGCATTTATGCATGACTTACACATGATCCATACTGACCTGAAGCCGGAAAACATACTTCTAGTTTCACCAGAGTATCTTAAAATTCCAGATTACAAGAGTACAACCAGATCACCAAGTTCCTTTTTCAAGAGAGTGCCCAAGTCAAGTGCTATAAAAGTTATTGATTTTGGCAGCACTACATATGAACGAGAAGATCAGACATACATTGTGTCAACACGTCATTATAGGGCACCTGAAGTTATCCTCGGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGTTGTATACTGGTTGAATTATGCACTGGTGAAGCTTTGTTTCAGACTCATGAAAATTTAGAGCATCTGGCCATGATGGAGAGGGTGCTTGGTCCTATACCACAGCAGATGTTAAAGAGAGTTGACCGACATGCAGAGAAGTATGTCCGAAGGGGTAGATTGGACTGGCCAGAGGGTGCAGCCTCACGAGAGAGTATTAAAGCTGTAATGAAGCTTCCCCGACTACAGAACATTATAATGCAGCATGTTGATCATTCAGCTGGAGATCTTATACATCTTTTGCAGGGGCTACTTAGATATGACCCCTTTGAAAGACTTACAGCTAGGGATGCTTTGAGGCATTCCTTCTTTACTAGAGATCAACTTAGGAGATGA

Predicted protein sequences of Glyma06g18530

Limit To All Plant Sequences

>Glyma06g18530.1   sequence type=predicted peptide   gene model=Glyma06g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEMERIVEFPHTYMDRPPRKRARLGWDIAEVPKAQVGLFCGQEVENISSFAPSEHPPSSLFKGVARNGSPPWRDDDKDGHYMFELGDNLTSRYKIHGKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMVEIEVLQQLGKHDKGSNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREIGWQLLECVAFMHDLHMIHTDLKPENILLVSPEYLKIPDYKSTTRSPSSFFKRVPKSSAIKVIDFGSTTYEREDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRVDRHAEKYVRRGRLDWPEGAASRESIKAVMKLPRLQNIIMQHVDHSAGDLIHLLQGLLRYDPFERLTARDALRHSFFTRDQLRR*

>Glyma06g18530.2   sequence type=predicted peptide   gene model=Glyma06g18530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMVEIEVLQQLGKHDKGSNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREIGWQLLECVAFMHDLHMIHTDLKPENILLVSPEYLKIPDYKSTTRSPSSFFKRVPKSSAIKVIDFGSTTYEREDQTYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPIPQQMLKRVDRHAEKYVRRGRLDWPEGAASRESIKAVMKLPRLQNIIMQHVDHSAGDLIHLLQGLLRYDPFERLTARDALRHSFFTRDQLRR*

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