Glyma06g18480 - SoyBase

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Report for Sequence Feature Glyma06g18480

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14802426
stop:	14807142
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g18480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G57520	AT	Annotation by Michelle Graham. TAIR10: seed imbibition 2 \| chr3:21289299-21292694 REVERSE LENGTH=656	SoyBase	E_val: 2.00E-139	ISS
GO:0006979	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to oxidative stress	SoyBase	N/A	ISS
GO:0034484	GO-bp	Annotation by Michelle Graham. GO Biological Process: raffinose catabolic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0052692	GO-mf	Annotation by Michelle Graham. GO Molecular Function: raffinose alpha-galactosidase activity	SoyBase	N/A	ISS
PF05691	PFAM	Raffinose synthase or seed inhibition protein Sip1	JGI		ISS
UniRef100_B9SGV5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Stachyose synthase, putative n=1 Tax=Ricinus communis RepID=B9SGV5_RICCO	SoyBase	E_val: 4.00E-150	ISS
UniRef100_I1KC95	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KC95_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g18480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18480

Paralog	Evidence	Comments
Glyma04g36410	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g175500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g18480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g18480

Limit To All Plant Sequences

>Glyma06g18480.3   sequence type=CDS   gene model=Glyma06g18480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGATCACCGCGGCGCCGACGGTGAAGGACAGGTGCCTTGAGGTGAGGGGCAAGGTGATTTTGACCCATGTCACCGGAAACATTGTTGTTTCTCCGGTGGTTGGAACAGAGTCTGCTTTCTTGGGTGCAACTTCAACCGTTTCAAGTTCACGTCATGTTTTTGATCTTGGAATACTCCAGGGATATAAGTTGCTATCTTTGTTCAGAGTCAAAATCTGGTGGATGATACCACCTGTAGGGAGATCTGCAAGTGATGTTCCAATGGAAACTCAATTGCTGCTCCTGAAGAAAGAGAAGAGTCTGCGCTTGAGGATGAGTTTTCTTCTGACTCTGAAGAGCCAACTACAGAGAACACTTGCTACATTCTCCTTTTGCCTGTTTTGGATGGACAGTTTCGCACAACTTTGCAGGGAACTCAATCAAATGAGCTCCAGCTCTGCATTGAAATTATATGACTTTAGATTTTTGAATGCTTCAGGAGATGCTTATGTTCAAGCTTCCCAATCACTAGAAGCAGCATTTGTGAATTCAGGGGACAATCCATTTGAGTTGATCAGGGACTCTATCAAAATATTGGAGAAACACAAAGGGACTTTCTGTCATCTTGAAAACAAGAGGATTCCTGCACATCTTGACTGGTTTGGATGGAGCACTTGGGATGCTTTTTACACTGAAGTGAGTCCACAAGGAATAAAAGAGGGCCTTCAGAGTTTCTTAAATGAAGGTTGTTCGCCAAAGTTCATCATCATTGATGATGGATGGCAAGAGACCCTCAACACGTTTCGCAAAGAAGGTGAATCAGTGATTGAGGGAACCCAGTTTGCAACCAGACTGATAGACATTAAAGAAAACAAAAAGTTCACCAATGCAGGCTCCGAAAATTCTTGTAACAATCTCCACGATTTTGTTGATTCCATCAAACAGAATATGAATGTAAAATACGTTTACATGTGGCATACTTTAACTGGTTACTGGGGAGGTGTACTCCCATCATCAGATGCATTGAAAAAATATAATCCAAAGATTTTATATCCAATTCAGTCACCTGGAACCACAGGGAACCTTAGAGATGTAGCCATGGACAGCTTGGAAAAATATGGAGTGGGAATCATTGACCCAGAAAAACTATATGACTTTTACAATGATTCCCACAGTTACCTTGCAAGCTGTGGTGTAGATGGAGTCAAATTCAAGAATAGTGCAGCAGCAAGAGCATCTGAGGATTTCATGCCAAGAGAACCAACATTTCAAACCTTACACATCGCCTCTGTCGCATTTAACAGTCTTCTTCTTCTGGGAGAGAAGCTAGTGCTGCCTGATGGATCAGTCTTGAGAGCAAGATATGCCGGCCACCCTACTCGAGATTGTTTATTTGAAGATCCTGTAATGGATGGTAAAAGTCTGCTGAAAATTTGTAATTTAAATGTTCTGACTGGGGTGGTAGGCGTCTTCAATTGCCAAGGAGCAGGAAGATTGCTTGACATGTACAATTCAGGAGGAGCAATAGAAGCCTTGGACTGCACCATGGATGTTGCACAGTGCGTAGTAAAAATCAAAGGCAGAGGATGTGGCCGTTTTGGAGCCTACTCCAACGTTAGACCGAAAAGTTGTGTAGTGGACATGAAGGAGGAGGAGTTCTCCTACATCCCTGAAGATGGATTATTGACTATTACACTTGGTTGTGAAGGCAATTCAAGGGACATGGAATTTGTATACTGA

Predicted protein sequences of Glyma06g18480

Limit To All Plant Sequences

>Glyma06g18480.3   sequence type=predicted peptide   gene model=Glyma06g18480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTITAAPTVKDRCLEVRGKVILTHVTGNIVVSPVVGTESAFLGATSTVSSSRHVFDLGILQGYKLLSLFRVKIWWMIPPVGRSASDVPMETQLLLLKKEKSLRLRMSFLLTLKSQLQRTLATFSFCLFWMDSFAQLCRELNQMSSSSALKLYDFRFLNASGDAYVQASQSLEAAFVNSGDNPFELIRDSIKILEKHKGTFCHLENKRIPAHLDWFGWSTWDAFYTEVSPQGIKEGLQSFLNEGCSPKFIIIDDGWQETLNTFRKEGESVIEGTQFATRLIDIKENKKFTNAGSENSCNNLHDFVDSIKQNMNVKYVYMWHTLTGYWGGVLPSSDALKKYNPKILYPIQSPGTTGNLRDVAMDSLEKYGVGIIDPEKLYDFYNDSHSYLASCGVDGVKFKNSAAARASEDFMPREPTFQTLHIASVAFNSLLLLGEKLVLPDGSVLRARYAGHPTRDCLFEDPVMDGKSLLKICNLNVLTGVVGVFNCQGAGRLLDMYNSGGAIEALDCTMDVAQCVVKIKGRGCGRFGAYSNVRPKSCVVDMKEEEFSYIPEDGLLTITLGCEGNSRDMEFVY*

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