SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24770 | AT | Annotation by Michelle Graham. TAIR10: 31-kDa RNA binding protein | chr4:12766223-12767952 REVERSE LENGTH=329 | SoyBase | E_val: 5.00E-115 | ISS |
| GO:0006396 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA processing | SoyBase | N/A | ISS |
| GO:0009073 | GO-bp | Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process | SoyBase | N/A | ISS |
| GO:0009451 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA modification | SoyBase | N/A | ISS |
| GO:0009631 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cold acclimation | SoyBase | N/A | ISS |
| GO:0009965 | GO-bp | Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis | SoyBase | N/A | ISS |
| GO:0016226 | GO-bp | Annotation by Michelle Graham. GO Biological Process: iron-sulfur cluster assembly | SoyBase | N/A | ISS |
| GO:0016553 | GO-bp | Annotation by Michelle Graham. GO Biological Process: base conversion or substitution editing | SoyBase | N/A | ISS |
| GO:0030154 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell differentiation | SoyBase | N/A | ISS |
| GO:0043489 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA stabilization | SoyBase | N/A | ISS |
| GO:0045036 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to chloroplast | SoyBase | N/A | ISS |
| GO:0045087 | GO-bp | Annotation by Michelle Graham. GO Biological Process: innate immune response | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009535 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0009579 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: thylakoid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0003723 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: RNA binding | SoyBase | N/A | ISS |
| GO:0008266 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: poly(U) RNA binding | SoyBase | N/A | ISS |
| KOG0131 | KOG | Splicing factor 3b, subunit 4 | JGI | ISS | |
| PTHR24012 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24012:SF56 | Panther | SUBFAMILY NOT NAMED | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| UniRef100_C6TIJ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TIJ0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_D7MGN0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein cp31 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7MGN0_ARALL | SoyBase | E_val: 1.00E-120 | ISS |
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Glyma06g18470 not represented in the dataset |
Glyma06g18470 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g36420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g175400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g18470.1 sequence type=CDS gene model=Glyma06g18470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCTATCACTTCCCTCACCATGGCCGAGTCCTGCCTCCTCTCTTCTCCCTCCTCACTCTTCCACACCAAAACCAAACCCTCTCTCTTTACACCCCCCTCCAAACCCCTCACACTCCAATTTTCATGCCTCAACTCCTCCGTCTCTCTCTCCCTCGCCGCACCAACTCACCGTTCTCCCCTTGTAACTTTCGTGGCCCAAACTTCCGATTGGGCTCAACAAGAAGAAGAACAGAGCCTCGCTGAAACCGAAGCGGGCCTGGAAAGTTGGGAGCCCAACGGCGAAGACGCCGGCGATGAGAGCTTCGTCGAACCGCCGGAAGAGGCCAAGCTCTTCGTTGGGAACTTGCCTTACGACGTTGATAGCCAGAAATTGGCCATGCTTTTCGAACAGGCCGGAACCGTTGAAATCGCTGAGGTTATTTATAACAGGGAAACTGACCAGAGTCGCGGGTTTGGGTTTGTGACGATGAGTACTGTTGAAGAAGCTGAAAGCGCTGTGGAGAAATTCAACCGCTATGATATCGATGGAAGACTGCTGACTGTTAATAAGGCTTCTCCAAGAGGAACTCGGCCCGAACGCCCACCACCTCGTCGTTCCTTTGAGTCTTCCTTATCAATCTATGTTGGTAATTTGCCATGGGATGTTGACAATACCCGGCTGAAGCAAATTTTCAGTAAACACGGTAATGTTGTGAATGCTCGGGTAGTCTATGACAGGGAGTCAGGTCGATCACGTGGCTTTGGCTTTGTCACAATGTCTGATGAGACAGAAATGAATGATGCCGTTGCTGCTCTTGATGGCGAGAGTTTGGACGGAAGGGCAATTAAGGTGAGTGTTGCTGAGGACAGGCCAAGGCGTGGCTCCTTTTGA
>Glyma06g18470.1 sequence type=predicted peptide gene model=Glyma06g18470 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSITSLTMAESCLLSSPSSLFHTKTKPSLFTPPSKPLTLQFSCLNSSVSLSLAAPTHRSPLVTFVAQTSDWAQQEEEQSLAETEAGLESWEPNGEDAGDESFVEPPEEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESAVEKFNRYDIDGRLLTVNKASPRGTRPERPPPRRSFESSLSIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAALDGESLDGRAIKVSVAEDRPRRGSF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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