Report for Sequence Feature Glyma06g18360
Feature Type: gene_model
Chromosome: Gm06
Start: 14700020
stop: 14705305
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g18360
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G24790 AT
Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr4:12778222-12781345 FORWARD LENGTH=857
SoyBase E_val: 0 ISS
GO:0006260 GO-bp
Annotation by Michelle Graham. GO Biological Process: DNA replication
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0009360 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: DNA polymerase III complex
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003887 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity
SoyBase N/A ISS
GO:0005524 GO-mf
Annotation by Michelle Graham. GO Molecular Function: ATP binding
SoyBase N/A ISS
KOG0989
KOG
Replication factor C, subunit RFC4
JGI ISS
PTHR11669 Panther
REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
JGI ISS
PF00004 PFAM
ATPase family associated with various cellular activities (AAA)
JGI ISS
UniRef100_G8A2G9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase III subunit gamma/tau n=1 Tax=Medicago truncatula RepID=G8A2G9_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023387A2 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023387A2 related cluster n=1 Tax=unknown RepID=UPI00023387A2
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g18360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g18360
Paralog Evidence Comments
Glyma04g36540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g18360 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g174600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g18360
Coding sequences of Glyma06g18360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g18360.2 sequence type=CDS gene model=Glyma06g18360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATGGATGGGCGGCGGCATTCGGTCGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCAACCACTAATTCCATGAGCAAACTCTCTTCTCTGGTTGACAATGTGCACTGGGAAAACGGTTCTGGCAATGAGATTTCCCTGCGGTTTTCGGATGCTGCTGGGCCATGTGATTCTGATGATAATGCTGCTTTCAGATCAAGGAATTTAGGTTTCAAGGGACATAGGAAGCCGGATGATGCTGATTTTTTATTGAATCATGGCCTGTTGAACTCAAGGTTGAAGCCTAGTGGGATGATGTCTTGTAAGGATGATCAACAAGATGATGAAATGGTTCACTCTAAGCCTAATCTGCAGTGCATTTCTGGAGATAAATCACCCAGTGAAAGCTGTGGTAGCAACCTTGGGGGTAAAGGATTGGACTTGTCTTGTATTGTGCTTCCAAGTAATAATTTCAAGGATGGGGATTCATGCTATATAGAAACTGCTAGATCATCTCAATTAGGGAGAACAGATTACTCCAAGTCAGCCAAAAAGTCTCTACGCAAGAATCAAGTAAAACCGTCGGAGGTAGCGATAAGTATTGCTAGCAATGAAGGCAGTCCATGTCCTTCTGGTTATGATGCTTTTTCGCCTTATAGTGCTAAAGTAGGTATAAATCAAGATGTTGATGTTTTAGATAACAATGATGATGGATGTGGAATAAGCTGCTGTTGGTCGAAATCACCAAGGTTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCCTTGATATCTCATCGAGTTGATGAGACGGATCTTGATGCACACAGGAGCATGAGACACAATGGTGGTGGGATTAGTCCAACTTTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTTTGGCTGCCATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGCGGCACCGGCAAGACATCCACGTCTAGGATGTTTGCCGCTGCACTGAATTGCCTGTCTGTTGTGGAGAAAAGGCCATGTGGTCTATGCAGAGAATGTGTTTTGTTATTTTCTGGAAGAAATAAAGATGTTAAGGAAGTGGATTCTGTGACAATCAATCGCGCGGAACAGGTTAAATCCCTTATCAAGAATGCAAGCATCCCTCCGGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGTCAGTTATTGAATGGGGAGACGTGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGGTTAAAGATGCCGACATTGTATGCAGACTAGAAAAAATTTGTGCCGAAGAAGGCCTTGATTTTGAACAGGATGCTTTGGACTTTATCGGTGCAAAATCCTGCGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGCTTGCTTGGTAAAAAGATCAATATTTCTTTAGCTTACGAGCTTACTGGGATCGTTTCCGATGATGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGATACATCGAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCACCTTGTATCTCAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGACGTCAGAAGTAGATTTTCTCGGAGACACAACTCTGAAGCTGATCTTCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAAATTCGAAGAATCAAACAACATGGTTCATTGTAGCTCTCCTACAGTTAAGCTCTGTAGATTGTCAATCTGTGGATGCAAATGATACCAAGTTGAGTCTTAGAGGTGCATGCAATGGAGGGCAAAGGTTGGAACATGTTACTACAGGCCTTTGTGATAACAAGTCATACAGATTAGAACCAGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACAGAGATGTGTCACTCTAGTCAGCTCAAAACTTTTTTCAGGAACAAGGGGAAGTTGTCTTCACTTCATGTTGATGGCAGTACAGCTTGTCTTGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAAGCGATTGCAAGTTCCTTGCAGTTCATATTGGGTTGCAACATTGAGTTGAGGATCACCTATGCACCGTGTGCTTCTGATTCCAAGTATGCCAAACTTAGATCATCTTTCAGTATCTTCGGTTGCTCTCACAGAATTCGTCAACAGAAGTCCTTATCATCTAATGAACAAGTAAGTGAATCAGATTACGCTGACTACACCTCGGAAAATCCCATGATGAAGGATAGAATTTCTACCTCTGATTGTGGAATGGATGCTGTAACGGCTTTGAGGAGTAGCGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTAAGAGAACATCAAGTGCTGAAGTGGATTTCTCTAAAGAAGAGGGATACAATTGTGCACATCTTGATCCATCAATGCTTGATTCAGATAATAACCACCAATCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGATCTTCACATTCATCCAAGTTGACTTTTCAGGGTATTCAACCACAGAAAGATTTTGTTATATCTGTCCCAAAAATGTGTGCATGTTCTGGGACATATACCTATGCTAACGAACCCAGCATTTTTTCAAGTAGTTGTAAGAACTGCACCAAAGCCTCAGAAAAAGTAGGTTGA
Predicted protein sequences of Glyma06g18360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g18360.2 sequence type=predicted peptide gene model=Glyma06g18360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MMDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLSSLVDNVHWENGSGNEISLRFSDAAGPCDSDDNAAFRSRNLGFKGHRKPDDADFLLNHGLLNSRLKPSGMMSCKDDQQDDEMVHSKPNLQCISGDKSPSESCGSNLGGKGLDLSCIVLPSNNFKDGDSCYIETARSSQLGRTDYSKSAKKSLRKNQVKPSEVAISIASNEGSPCPSGYDAFSPYSAKVGINQDVDVLDNNDDGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDETDLDAHRSMRHNGGGISPTLETPRSLSMKFRPKSFSDLVGQNVVVRSLLAAISRGRITSFYLFYGPRGTGKTSTSRMFAAALNCLSVVEKRPCGLCRECVLLFSGRNKDVKEVDSVTINRAEQVKSLIKNASIPPVSSRFKVFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKVKDADIVCRLEKICAEEGLDFEQDALDFIGAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLHLVSQLANLIMDILAGKCENGGSDVRSRFSRRHNSEADLQKLNNALKILSETEKQLRNSKNQTTWFIVALLQLSSVDCQSVDANDTKLSLRGACNGGQRLEHVTTGLCDNKSYRLEPEDHKGTLDSIWYKATEMCHSSQLKTFFRNKGKLSSLHVDGSTACLAIAELEFHHRHHVSKAEKSWKAIASSLQFILGCNIELRITYAPCASDSKYAKLRSSFSIFGCSHRIRQQKSLSSNEQVSESDYADYTSENPMMKDRISTSDCGMDAVTALRSSEGNLLSSGERFLNRSFQETKRTSSAEVDFSKEEGYNCAHLDPSMLDSDNNHQSNCFPKTLWLQKKFRSSHSSKLTFQGIQPQKDFVISVPKMCACSGTYTYANEPSIFSSSCKNCTKASEKVG*