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Report for Sequence Feature Glyma06g18360

Feature Type:gene_model
Chromosome:Gm06
Start:14700020
stop:14705305
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24790AT Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein | chr4:12778222-12781345 FORWARD LENGTH=857 SoyBaseE_val: 0ISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009360GO-cc Annotation by Michelle Graham. GO Cellular Compartment: DNA polymerase III complex SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003887GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA-directed DNA polymerase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0989 KOG Replication factor C, subunit RFC4 JGI ISS
PTHR11669Panther REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT JGI ISS
PF00004PFAM ATPase family associated with various cellular activities (AAA) JGI ISS
UniRef100_G8A2G9UniRef Annotation by Michelle Graham. Most informative UniRef hit: DNA polymerase III subunit gamma/tau n=1 Tax=Medicago truncatula RepID=G8A2G9_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI00023387A2UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023387A2 related cluster n=1 Tax=unknown RepID=UPI00023387A2 SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g36540 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g174600 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g18360.2   sequence type=CDS   gene model=Glyma06g18360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGATGGGCGGCGGCATTCGGTCGATATTCCAATTTCCAAAACTCTTGTGGCACTGAGGAGAGTCAGGTCATTGAGGGATCCAACCACTAATTCCATGAGCAAACTCTCTTCTCTGGTTGACAATGTGCACTGGGAAAACGGTTCTGGCAATGAGATTTCCCTGCGGTTTTCGGATGCTGCTGGGCCATGTGATTCTGATGATAATGCTGCTTTCAGATCAAGGAATTTAGGTTTCAAGGGACATAGGAAGCCGGATGATGCTGATTTTTTATTGAATCATGGCCTGTTGAACTCAAGGTTGAAGCCTAGTGGGATGATGTCTTGTAAGGATGATCAACAAGATGATGAAATGGTTCACTCTAAGCCTAATCTGCAGTGCATTTCTGGAGATAAATCACCCAGTGAAAGCTGTGGTAGCAACCTTGGGGGTAAAGGATTGGACTTGTCTTGTATTGTGCTTCCAAGTAATAATTTCAAGGATGGGGATTCATGCTATATAGAAACTGCTAGATCATCTCAATTAGGGAGAACAGATTACTCCAAGTCAGCCAAAAAGTCTCTACGCAAGAATCAAGTAAAACCGTCGGAGGTAGCGATAAGTATTGCTAGCAATGAAGGCAGTCCATGTCCTTCTGGTTATGATGCTTTTTCGCCTTATAGTGCTAAAGTAGGTATAAATCAAGATGTTGATGTTTTAGATAACAATGATGATGGATGTGGAATAAGCTGCTGTTGGTCGAAATCACCAAGGTTTAGAGAATCAAATCTATATGGTGAGATAGAAGACCGTCCCTTGATATCTCATCGAGTTGATGAGACGGATCTTGATGCACACAGGAGCATGAGACACAATGGTGGTGGGATTAGTCCAACTTTGGAAACTCCTAGAAGTTTGTCTATGAAATTCAGGCCTAAATCATTTAGTGATTTGGTGGGACAAAATGTGGTAGTAAGGTCTCTTTTGGCTGCCATCTCCAGAGGAAGGATAACATCATTTTATCTCTTCTATGGTCCACGCGGCACCGGCAAGACATCCACGTCTAGGATGTTTGCCGCTGCACTGAATTGCCTGTCTGTTGTGGAGAAAAGGCCATGTGGTCTATGCAGAGAATGTGTTTTGTTATTTTCTGGAAGAAATAAAGATGTTAAGGAAGTGGATTCTGTGACAATCAATCGCGCGGAACAGGTTAAATCCCTTATCAAGAATGCAAGCATCCCTCCGGTTTCCTCACGTTTTAAGGTTTTCATTATTGATGAGTGTCAGTTATTGAATGGGGAGACGTGGGCAAGCATTTCAAATAGCCTAGAGAACCTTTCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTCCGAAGGTTAAAGATGCCGACATTGTATGCAGACTAGAAAAAATTTGTGCCGAAGAAGGCCTTGATTTTGAACAGGATGCTTTGGACTTTATCGGTGCAAAATCCTGCGGTTCTGTTAGGGATGCAGAAATGATGCTTGATCAGATGAGCTTGCTTGGTAAAAAGATCAATATTTCTTTAGCTTACGAGCTTACTGGGATCGTTTCCGATGATGAGTTGCTTGATTTGCTGGATCTGGCTTTGTCATCTGATACATCGAATACAGTTATAAGAGCTCGGGAGCTGATGAGATCAAGGATAGATCCTTTGCACCTTGTATCTCAGCTGGCAAATCTCATTATGGACATCCTTGCAGGGAAATGTGAAAATGGTGGTTCTGACGTCAGAAGTAGATTTTCTCGGAGACACAACTCTGAAGCTGATCTTCAGAAACTAAACAATGCATTGAAAATACTTTCTGAAACTGAGAAGCAGTTAAGAAATTCGAAGAATCAAACAACATGGTTCATTGTAGCTCTCCTACAGTTAAGCTCTGTAGATTGTCAATCTGTGGATGCAAATGATACCAAGTTGAGTCTTAGAGGTGCATGCAATGGAGGGCAAAGGTTGGAACATGTTACTACAGGCCTTTGTGATAACAAGTCATACAGATTAGAACCAGAGGATCACAAAGGAACATTGGATTCCATTTGGTATAAAGCTACAGAGATGTGTCACTCTAGTCAGCTCAAAACTTTTTTCAGGAACAAGGGGAAGTTGTCTTCACTTCATGTTGATGGCAGTACAGCTTGTCTTGCTATTGCCGAGTTGGAGTTCCACCATCGCCACCATGTATCCAAGGCTGAGAAGTCATGGAAAGCGATTGCAAGTTCCTTGCAGTTCATATTGGGTTGCAACATTGAGTTGAGGATCACCTATGCACCGTGTGCTTCTGATTCCAAGTATGCCAAACTTAGATCATCTTTCAGTATCTTCGGTTGCTCTCACAGAATTCGTCAACAGAAGTCCTTATCATCTAATGAACAAGTAAGTGAATCAGATTACGCTGACTACACCTCGGAAAATCCCATGATGAAGGATAGAATTTCTACCTCTGATTGTGGAATGGATGCTGTAACGGCTTTGAGGAGTAGCGAAGGGAATTTGCTCAGCTCAGGAGAAAGATTTTTGAATAGGTCATTTCAAGAGACTAAGAGAACATCAAGTGCTGAAGTGGATTTCTCTAAAGAAGAGGGATACAATTGTGCACATCTTGATCCATCAATGCTTGATTCAGATAATAACCACCAATCTAACTGTTTTCCTAAAACTCTTTGGCTTCAAAAGAAGTTCCGATCTTCACATTCATCCAAGTTGACTTTTCAGGGTATTCAACCACAGAAAGATTTTGTTATATCTGTCCCAAAAATGTGTGCATGTTCTGGGACATATACCTATGCTAACGAACCCAGCATTTTTTCAAGTAGTTGTAAGAACTGCACCAAAGCCTCAGAAAAAGTAGGTTGA

>Glyma06g18360.2   sequence type=predicted peptide   gene model=Glyma06g18360   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMDGRRHSVDIPISKTLVALRRVRSLRDPTTNSMSKLSSLVDNVHWENGSGNEISLRFSDAAGPCDSDDNAAFRSRNLGFKGHRKPDDADFLLNHGLLNSRLKPSGMMSCKDDQQDDEMVHSKPNLQCISGDKSPSESCGSNLGGKGLDLSCIVLPSNNFKDGDSCYIETARSSQLGRTDYSKSAKKSLRKNQVKPSEVAISIASNEGSPCPSGYDAFSPYSAKVGINQDVDVLDNNDDGCGISCCWSKSPRFRESNLYGEIEDRPLISHRVDETDLDAHRSMRHNGGGISPTLETPRSLSMKFRPKSFSDLVGQNVVVRSLLAAISRGRITSFYLFYGPRGTGKTSTSRMFAAALNCLSVVEKRPCGLCRECVLLFSGRNKDVKEVDSVTINRAEQVKSLIKNASIPPVSSRFKVFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKVKDADIVCRLEKICAEEGLDFEQDALDFIGAKSCGSVRDAEMMLDQMSLLGKKINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLHLVSQLANLIMDILAGKCENGGSDVRSRFSRRHNSEADLQKLNNALKILSETEKQLRNSKNQTTWFIVALLQLSSVDCQSVDANDTKLSLRGACNGGQRLEHVTTGLCDNKSYRLEPEDHKGTLDSIWYKATEMCHSSQLKTFFRNKGKLSSLHVDGSTACLAIAELEFHHRHHVSKAEKSWKAIASSLQFILGCNIELRITYAPCASDSKYAKLRSSFSIFGCSHRIRQQKSLSSNEQVSESDYADYTSENPMMKDRISTSDCGMDAVTALRSSEGNLLSSGERFLNRSFQETKRTSSAEVDFSKEEGYNCAHLDPSMLDSDNNHQSNCFPKTLWLQKKFRSSHSSKLTFQGIQPQKDFVISVPKMCACSGTYTYANEPSIFSSSCKNCTKASEKVG*







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