Glyma06g18320 - SoyBase

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Report for Sequence Feature Glyma06g18320

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14664068
stop:	14669471
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g18320

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48420	AT	Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein \| chr3:17929743-17931551 FORWARD LENGTH=319	SoyBase	E_val: 7.00E-162	ISS
GO:0006098	GO-bp	Annotation by Michelle Graham. GO Biological Process: pentose-phosphate shunt	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0010027	GO-bp	Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0016117	GO-bp	Annotation by Michelle Graham. GO Biological Process: carotenoid biosynthetic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0019684	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG2914	KOG	Predicted haloacid-halidohydrolase and related hydrolases	JGI		ISS
PTHR18901	Panther	2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2	JGI		ISS
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI		ISS
UniRef100_G8A2H2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein cbbY n=1 Tax=Medicago truncatula RepID=G8A2H2_MEDTR	SoyBase	E_val: 2.00E-163	ISS
UniRef100_UPI000233AA4F	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233AA4F related cluster n=1 Tax=unknown RepID=UPI000233AA4F	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g18320

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18320

Paralog	Evidence	Comments
Glyma04g36600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18320 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g174200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g18320

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g18320

Limit To All Plant Sequences

>Glyma06g18320.1   sequence type=CDS   gene model=Glyma06g18320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCTGCAAGTAGCATCATCTCCATCTCCTCTGCTTCACTCTTTACTCCAACAACAACCCAATGCCTCCTCAAACACAATTACAAGGACCATGATCATGTTCATGTTCCATCATCATCATCATCATACTTCACAACACACGCTGCTCTCAAGATATCAAGACCAACAACAACAACGTTTGGAATCACCACAACAACCACCAGGGTTAATAATGTTCCTCCTCGTAGGTTTAGTTGTTCAGCATCGTCATCTTCTTCCTCTTCCACTCTTCCCTCAGCTCTTCTATTTGACTGTGATGGAGTCCTTGTGGATACTGAGAAAGATGGTCACCGCATATCTTTCAACCAAACCTTCCAAGAGAGAGAACTAGGCGTTACATGGGATGTGGACTTGTACGGGGAATTGCTCAAAATTGGAGGCGGAAAAGAAAGGATGACAGCGTACTTTAACAAGGTCGGTTGGCCTGCGAATGCCCCAACAGATGAACAAGAAAGAAAAGAATTCATAGCTTCACTCCACAAACAAAAGACAGAACTATTTATGGCCCTTATTGAGAAAAAACTGTTGCCTCTTCGTCCAGGTGTTGCAAAGATTATCGACCAGGCTTTTGCTCAAGGAGTCCAAGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATTCTTGCTGGGACCTGAGAGAGCAGAAAAAATCAAGATATTTGCCGGAGACGTGGTTCCCCGTAAAAAGCCTGATCCAGCTATCTACCTATTAGCAGCCAGCACTCTGGGTGTTGAACCTTCAAGATGTGTTGTGGTGGAGGACAGTGCCATAGGCCTAGCAGCTGCTAAAGCAGCTGGAATGACGTGTATAGTAACAAAGAGCGGCTATACAGCAGATGAAGATTTCTTAAATGCAGATGCAGTCTTTGACTGCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCTTTCTGCGGAAGCCTTCTTGAGAAGCAATACGTGAGCTAG

Predicted protein sequences of Glyma06g18320

Limit To All Plant Sequences

>Glyma06g18320.1   sequence type=predicted peptide   gene model=Glyma06g18320   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAASSIISISSASLFTPTTTQCLLKHNYKDHDHVHVPSSSSSYFTTHAALKISRPTTTTFGITTTTTRVNNVPPRRFSCSASSSSSSSTLPSALLFDCDGVLVDTEKDGHRISFNQTFQERELGVTWDVDLYGELLKIGGGKERMTAYFNKVGWPANAPTDEQERKEFIASLHKQKTELFMALIEKKLLPLRPGVAKIIDQAFAQGVQVAVCSTSNEKAVSAIVSFLLGPERAEKIKIFAGDVVPRKKPDPAIYLLAASTLGVEPSRCVVVEDSAIGLAAAKAAGMTCIVTKSGYTADEDFLNADAVFDCIGDPPEERFDLAFCGSLLEKQYVS*

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