Glyma06g18300 - SoyBase

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Report for Sequence Feature Glyma06g18300

Feature Type:	gene_model
Chromosome:	Gm06
Start:	14648291
stop:	14658101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g18300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G48430	AT	Annotation by Michelle Graham. TAIR10: relative of early flowering 6 \| chr3:17935609-17940456 FORWARD LENGTH=1360	SoyBase	E_val: 0	ISS
GO:0009741	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to brassinosteroid stimulus	SoyBase	N/A	ISS
GO:0009826	GO-bp	Annotation by Michelle Graham. GO Biological Process: unidimensional cell growth	SoyBase	N/A	ISS
GO:0010228	GO-bp	Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem	SoyBase	N/A	ISS
GO:0033169	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 demethylation	SoyBase	N/A	ISS
GO:0035067	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of histone acetylation	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005622	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: intracellular	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR10694	Panther	JUMONJI DOMAIN CONTAINING PROTEIN	JGI		ISS
PTHR10694:SF8	Panther	RETINOBLASTOMA BINDING PROTEIN-RELATED	JGI		ISS
PF02373	PFAM	JmjC domain	JGI		ISS
PF02375	PFAM	jmjN domain	JGI		ISS
UniRef100_G8A2H5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Lysine-specific demethylase 5B n=1 Tax=Medicago truncatula RepID=G8A2H5_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023387A0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023387A0 related cluster n=1 Tax=unknown RepID=UPI00023387A0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g18300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g18300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g174000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g18300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g18300

Limit To All Plant Sequences

>Glyma06g18300.1   sequence type=CDS   gene model=Glyma06g18300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGTAGTTTCTGAAGGAAACGGCGACGTTTTACCATGGCTGAAATCGATGCCGGTGGCGCCGGAGTACCGGCCGAGCGCCGCGGAGTTTCAAGATCCTATAAGTTACATATTCAAGATCGAGAAGGAAGCTTCCAAGTACGGAATCTGCAAAATCATCCCTCCCTTCCCACCTTCTTCCAGGAAGACCGCAATCGCCAACCTCAACCGCTCACTCGCGGAGACCGGCTCCACATTCACCACGCGCCAGCAGCAGATCGGCTTCTGCCCCCGCAGGCCCAGGCCCGTCCAGAGGCCCGTCTGGCAGAGCGGTGATCGCTACACCTTCACCGAGTTCGAGTCCAAGGCCAAGTCCTTTGAGAAGACATACCTCAAACGCCACGCCAAGAAGGCCTCCGGCCTTGGCCCGGGCCCTCTGGAGACTGAAACGCTGTTCTGGAAGGCGACGCTGGACAAACCGTTCTCCGTGGAATACGCGAACGACATGCCGGGGTCAGCCTTTTCCCCGAAATGCAGGCGCGTAGGGGATCCAAGCTCACTGGCTGACACTCAGTGGAACATGAGAGCGGTTTCGAGGGCCAAAGGTTCGCTCTTACAGTTCATGAAAGAGGAGATTCCGGGCGTTACTTCTCCTATGGTCTACGTTGCCATGCTCTTCAGCTGGTTCGCGTGGCATGTTGAGGATCATGACTTGCACAGCCTCAATTACCTCCACATGGGCGCCGGCAAGACCTGGTACGGCGTCCCCCGTGACGCCGCCGTTGCTTTCGAGGAAGTCGTTAGGGTTCACGGCTACGGCGGAGAGATTAACCCGCTCGTTACTTTTGCTATTCTAGGTGAGAAAACCACAGTGATGTCGCCTGAAGTATTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTACAAAATGCTGGGGAATTTGTTGTGACTTTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCGGCGAACATTGCAACACCTGAGTGGTTGAGGTTTGCTAAAGATGCTGCTATTCGGAGGGCTTCACTAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCTAGAATTCCTGCGGGCATCAGTGCTGAACCTCGTAGTTCTCGTCTTAAAGACAAGAAGAAGGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTCCAGGATGTGCTACAGAACAATGATCTGCTTCATTTTCTTGGGCAAGGATCTGCTGTAGTACTTCTTCCTCATAGCTCAGTTGACATTTCTGTCTGCTCAAAATTACGTGTTGGATCCCAGCAATCCATTAATTTAAGCAATTCTGAGGGAATGCATTCTTCAAAAGGTTTTGTTTCTGATGATCTGGCATTCAACAGAAGTCATGGAATCAAGCAAGGAAAAAGTTTCTATTTTGTGAAAGACAAGTTTACTACATTGTGTGAAAGGAACATGATTTCCTCTTTTGATGTAAATGGTAACATAAGCATTTCAAGTTTTAATCCGCTTCAAAGAGACACTGAAAGAGAAACTTGTCAAGGAGATGGGTTGTCAGATCAGAGACTGTTTTCATGTGTCACATGTGGAATATTATGCTTTTCCTGTGTTGCTATTGTACAGCCTAGAGAACCAGCAGCTAGATATCTTATGTCAGCTGATTGCAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTATCTAACAATAAATTTACTATTGCCCGTGAAGAAGCAACTATTCCTGAGTCAAATATGTATACAGGATGGATGAAAAAGAATGTCCAAGATGGTATACATGATGTTCCTTTTCAATCTTCTCAGGTGGCTTTAAATACTGTAAGTGAAAATGGAAATACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGACTCTGAGGAAGATCAGATTGCGGTTGACAGTCATGAATCAAATGTGATAAACTCTGCTTCAGAAAGTTTACTTTCTGATACTCGAGATTCCCATGCTAGTCGGACTGCACTTGATAGGGGAGATTATATTCCTTCAAAGAGTTCCAGTTATGAGGATTTTATACATCGTAGATTAGAGTGTTTTGAAAATACAAGGACGGTGCCTAATTCCACCTCTAATTGTTCCCAAGATGCTTATGATGCTAAAAGGTCGTTGTCTAGCAAGTCTATGGTTCCCTTTGATTATAAAAAAGCTTTGATGGTGCTACAATCTGATGAAGACTCATCCAGAATGCATGTTTTTTGTCTAGAGCATGCTGCAGAAGCAGAGCAGCAACTTCGCTCAATTGGTGGAGCCGACATATTGCTCCTATGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAAATGGTGGCGGAAGATTTGGGGATTGATTACGTATTGAAGAATATTGTATACAGGCACGCTTCCACGGAGGATGAGGAGAGGATCCAGTCGGCTCTGGACAATGAGGAAGCTATTCCTGGGAATGGTGACTGGGCTGTAAAGCTAGGAATCAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCTCTTTATAGTAAGCAGATGCCTTACAATTCTGTTATATACTCTGCATTTGGTTGTAGCTCTCCAGCAAGCTCACTTGTAGAGCCAAAGGTCTACCAAAGAAGGGTCAACAAGCAGAAAAAGATTGTTGCTGGGAAATGGTGTGGTAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCAAAAAGAGATTCTGAAGATATTGAGGATGAGAAACTCTTACAAGGGTTGACATTACCTGATGAGAAAATCGAAAGATCAGAAAGTACCCCCAAAAGGGAAGCTATTAGCAGAAAATCAGGTAAGAAAAGGAAAAAGACAGCAGAGAATGGACGATTCAGGAAAGGAAGTTATGCTAAGAAAAATATACTTTCAGATGATTCCACTGAAGATAAACCCAACTCACAGCCAAGGAGGATTCTTCGAAGTAAGAAAGCCAGGCATGTTGAGAGAGACTGTGCTGCTTTGAAACGGGATTATTCTCCTCCATATCATCATAGAAAACCAACAAGCCACCAAACAAACTTCACTGAAAGTGATGCAGTTTCTGATGATTCACTTGATGATGATGATCACATGCGGCAAAGGAGGAATGTTAAAGTTGAAAAGGCTAAATTTATGGACAATGATGTGGTTTCAAATGATACGATGGACTATGACTCTGATTGCCTGCAGAGGGAAGAACATAGCAGCAAGCAAGTTGAAGATATGGAGAGAGATGCAAATTCAGAAGATTTTTTGGATGTTGGTTCTCTTCAGCTGCAACGGAAGATTTCCAGAGCCATGCATGTTAAAAGCATCAGAGAAGAAGATATAATTTCTGATGACCAAATGGAGAGTCCTTTTCAAAAGAGGCAAAAGAGAATTCCTAAAAGCAGGCAGGGAAAATACCTTACTGGAAAAGATATAATATCTGACGACCAACTAGAGCTGAAAATGCAGAAGCGGCAACAGACGAATCCTAAAAGCAGGCAAGCCAAATACCTCAACAAAGAGGATATTGCATCAGATGACCAATTGGAGGACCATTATCGTAGATATCAAAGGAATCCTAAAGGCAGACAGGCCACATGTGTAGCAGGGGAAGATGAAATGTCTGATGACCATTTGGAGAATCATTGTCAGAAGCAGCAAACAAATTTCTCTAGGAAAAGGCAAAACAAAGATGTTGTTAGAGAGGTTAAAAACGAAATGTGTGATGACCAATTGGAGGACCATTTTCTGAAGCAGCATAGAAGATTTCCTAAGAGCAGGCAAAATAAACACACTGAGAAAGAAATCATGGATGACTTAGCTGAGAATAATTCTCATCTGCTGCATAGAACTCCTAAAAGGAAGCAAGCTAAATGCATGGAAGAAGATGATATGAATTCAGATGATGAAATGGAAGATGATCAGCCGCTGAGGAGAGCACTTCGAAGTAAACAAGCTAAACCAAAGACACTTCTGAAACAAGCTAATTCCTTCCAAGCGAAAAAGCAGGCATCTCGGCCCATAAAACAGGGCTCTCGGTTGCTTGTGAAATCAAAGGCTCCTCAGCAAATAAAACAGCCTGCTCATTTGCGGAATAAGCAATCTAATAACACCCAGGAATTTAGTTTATATATGGAAGAGGAGGAAGATGGTGGACCTAGCACACGCCTTAGGAAGAGAGCCACAAAAGCTCAGGAATCTGAAGGAAAATTGAAAGACAAGCAAACAAAAAGGAAGAAGGTGAAGAATGCTGCGGCTGCAAAGGTTTCGGTTGGCCATGCCAAAATGAAGGATGGGGAAGCAGAATATCAGTGTGATATTGATGGGTGCACTATGAGTTTTGGGTCGAAACAGGAGCTGATGCATCATAAGAAAAACATCTGCCCTGTAAAAGGGTGTGGGAAGAAGTTTTTCTCACACAAGTATCTGGTGCAGCATCGTCGAGTTCATGAGGATGAGCGCCCGTTGAAGTGCCCTTGGAAGGGATGCAAGATGACTTTCAAGTGGGCATGGGCTCGTACCGAGCACATTCGAGTCCACACTGGCGCAAGACCTTATGTATGTGCCGAGCCAGATTGTGGACAAACATTCAGATTTGTGTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATTCAGCAAAGAAGAATTGTCAATAG

Predicted protein sequences of Glyma06g18300

Limit To All Plant Sequences

>Glyma06g18300.1   sequence type=predicted peptide   gene model=Glyma06g18300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGVVSEGNGDVLPWLKSMPVAPEYRPSAAEFQDPISYIFKIEKEASKYGICKIIPPFPPSSRKTAIANLNRSLAETGSTFTTRQQQIGFCPRRPRPVQRPVWQSGDRYTFTEFESKAKSFEKTYLKRHAKKASGLGPGPLETETLFWKATLDKPFSVEYANDMPGSAFSPKCRRVGDPSSLADTQWNMRAVSRAKGSLLQFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRVHGYGGEINPLVTFAILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASLNYPPMVSHFQLLYDLALALCSRIPAGISAEPRSSRLKDKKKGEGETVIKELFVQDVLQNNDLLHFLGQGSAVVLLPHSSVDISVCSKLRVGSQQSINLSNSEGMHSSKGFVSDDLAFNRSHGIKQGKSFYFVKDKFTTLCERNMISSFDVNGNISISSFNPLQRDTERETCQGDGLSDQRLFSCVTCGILCFSCVAIVQPREPAARYLMSADCSFFNDWVVGSGVSNNKFTIAREEATIPESNMYTGWMKKNVQDGIHDVPFQSSQVALNTVSENGNTALALLASAYGNSSDSEEDQIAVDSHESNVINSASESLLSDTRDSHASRTALDRGDYIPSKSSSYEDFIHRRLECFENTRTVPNSTSNCSQDAYDAKRSLSSKSMVPFDYKKALMVLQSDEDSSRMHVFCLEHAAEAEQQLRSIGGADILLLCHPDYPKIEAEAKMVAEDLGIDYVLKNIVYRHASTEDEERIQSALDNEEAIPGNGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYSAFGCSSPASSLVEPKVYQRRVNKQKKIVAGKWCGKVWMSNQVHPLLAKRDSEDIEDEKLLQGLTLPDEKIERSESTPKREAISRKSGKKRKKTAENGRFRKGSYAKKNILSDDSTEDKPNSQPRRILRSKKARHVERDCAALKRDYSPPYHHRKPTSHQTNFTESDAVSDDSLDDDDHMRQRRNVKVEKAKFMDNDVVSNDTMDYDSDCLQREEHSSKQVEDMERDANSEDFLDVGSLQLQRKISRAMHVKSIREEDIISDDQMESPFQKRQKRIPKSRQGKYLTGKDIISDDQLELKMQKRQQTNPKSRQAKYLNKEDIASDDQLEDHYRRYQRNPKGRQATCVAGEDEMSDDHLENHCQKQQTNFSRKRQNKDVVREVKNEMCDDQLEDHFLKQHRRFPKSRQNKHTEKEIMDDLAENNSHLLHRTPKRKQAKCMEEDDMNSDDEMEDDQPLRRALRSKQAKPKTLLKQANSFQAKKQASRPIKQGSRLLVKSKAPQQIKQPAHLRNKQSNNTQEFSLYMEEEEDGGPSTRLRKRATKAQESEGKLKDKQTKRKKVKNAAAAKVSVGHAKMKDGEAEYQCDIDGCTMSFGSKQELMHHKKNICPVKGCGKKFFSHKYLVQHRRVHEDERPLKCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHSAKKNCQ*

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