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Report for Sequence Feature Glyma06g18216

Feature Type:gene_model
Chromosome:Gm06
Start:14541262
stop:14603971
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g18216
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G36850AT Annotation by Michelle Graham. TAIR10: glucan synthase-like 8 | chr2:15454935-15469666 REVERSE LENGTH=1904 SoyBaseE_val: 0ISS
GO:0006075GO-bp Annotation by Michelle Graham. GO Biological Process: (1->3)-beta-D-glucan biosynthetic process SoyBaseN/AISS
GO:0006259GO-bp Annotation by Michelle Graham. GO Biological Process: DNA metabolic process SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0007129GO-bp Annotation by Michelle Graham. GO Biological Process: synapsis SoyBaseN/AISS
GO:0007131GO-bp Annotation by Michelle Graham. GO Biological Process: reciprocal meiotic recombination SoyBaseN/AISS
GO:0007155GO-bp Annotation by Michelle Graham. GO Biological Process: cell adhesion SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0009556GO-bp Annotation by Michelle Graham. GO Biological Process: microsporogenesis SoyBaseN/AISS
GO:0009887GO-bp Annotation by Michelle Graham. GO Biological Process: organ morphogenesis SoyBaseN/AISS
GO:0009888GO-bp Annotation by Michelle Graham. GO Biological Process: tissue development SoyBaseN/AISS
GO:0010014GO-bp Annotation by Michelle Graham. GO Biological Process: meristem initiation SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0010638GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of organelle organization SoyBaseN/AISS
GO:0016049GO-bp Annotation by Michelle Graham. GO Biological Process: cell growth SoyBaseN/AISS
GO:0032204GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of telomere maintenance SoyBaseN/AISS
GO:0032504GO-bp Annotation by Michelle Graham. GO Biological Process: multicellular organism reproduction SoyBaseN/AISS
GO:0033044GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of chromosome organization SoyBaseN/AISS
GO:0042138GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic DNA double-strand break formation SoyBaseN/AISS
GO:0043247GO-bp Annotation by Michelle Graham. GO Biological Process: telomere maintenance in response to DNA damage SoyBaseN/AISS
GO:0045010GO-bp Annotation by Michelle Graham. GO Biological Process: actin nucleation SoyBaseN/AISS
GO:0045132GO-bp Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation SoyBaseN/AISS
GO:0045595GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell differentiation SoyBaseN/AISS
GO:0048589GO-bp Annotation by Michelle Graham. GO Biological Process: developmental growth SoyBaseN/AISS
GO:0048765GO-bp Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation SoyBaseN/AISS
GO:0052543GO-bp Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall SoyBaseN/AISS
GO:0071555GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall organization SoyBaseN/AISS
GO:0000148GO-cc Annotation by Michelle Graham. GO Cellular Compartment: 1,3-beta-D-glucan synthase complex SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003843GO-mf Annotation by Michelle Graham. GO Molecular Function: 1,3-beta-D-glucan synthase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG0916 KOG 1,3-beta-glucan synthase/callose synthase catalytic subunit JGI ISS
PTHR12741Panther UNCHARACTERIZED DUF605 JGI ISS
PTHR12741:SF4Panther gb def: Hypothetical protein F10M23.90 (AT4g26750/F10M23 90) (Hypothetical protein AT4g2 JGI ISS
PF02364PFAM 1,3-beta-glucan synthase component JGI ISS
UniRef100_B9RAN8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transferase, transferring glycosyl groups, putative n=1 Tax=Ricinus communis RepID=B9RAN8_RICCO SoyBaseE_val: 0ISS
UniRef100_UPI0002338634UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002338634 related cluster n=1 Tax=unknown RepID=UPI0002338634 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g18216
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g18216 not represented in the dataset
Glyma06g18216 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g18216
ParalogEvidenceComments
Glyma04g36725 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g18216 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g173500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g18216
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g18216
>Glyma06g18216.1   sequence type=CDS   gene model=Glyma06g18216   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTAGGGCTCGCGAGAACTGGGAGAAGCTGGTTCGCGCGACGCTGAAGAGGGAGCAACATAGGAATGCGGGCCAAGGCCACGCCAGAGTCCCCAGCGGAATCGCCGGCGCGGTTCCGCCGTCGCTCGCGCAAACCACCAACATTGACTTGATCTTGCAGGCCGCCGACGATATTCAATCTGAGGATCCCAACGTCGCCAGGATCTTGTGTGAGCAGGCATATAGTATGGCTCAAAATCTTGATCCCAACAGTGATGGTAGGGGAGTTCTGCAGTTCAAGACTGGTTTAATGTCTGTTATCAAGCAAAAACTTGTTAAGAAGGATAGGGTACGGATTGATCGCAACCATGACATTGAACACCTGTGGAAGTTTTATCAACACTACAAGCAACGCCATAGAGTGGATGACATCCAACGAGAAGAACAGAGACTGCAAGAATCTGGAACTTTTAGCTCCACCACATTGGGAGAGTTGAAACTTAGATCGTCAGAAATGAGAAAGATAATTGCCACTCTACGTGCTTTAGTGGAGGTCCTGGAGTCACTTAGCAAGGATGCTGATCCCAGTGGAGTTGGAGGGCTCATAATGGAGGAGTTGAGAAAAATAAAGAAGTCAAGTGTGACATTATCTGGAGAGTTGACACCATACAATATTATTCCTCTGGAAGCACCATCATTAACCAATCCTATCAGAATTTTCCCTGAAGTTAAAGCAGCAATATCTGCAATTAGATATACTGACCAGTTCCCTAGACTTCCTGCTGGACTTAGAATATCTGGACAAAGGGATGCAGACATGTTTGATCTTTTGGAATTTGTGTTCGGTTTCCAGAAAGATAATGTAAGGAACCAGCGTGAAAATGTTGTTTTGATGATAGCAAATAAGCAGTCTCGACTTGGCATACCTGCTGAAACTGATCCAAAAATAGATGAGAAAACAATCAATGAAGTGTTCTTGAAGGTGCTAGATAACTATATCAGGTGGTGCAGATACTTACGAATTCGTCTTGCATGGAATAGTTTAGAGGCAATTAACCGGGATAGGAAGCTTTTTTTGGTTTCTCTGTATTTTCTTATTTGGGGTGAAGCTGCAAATGTTCGTTTTCTTCCGGAGTGTATTTGCTATATATTCCACAATATGGCTAAAGAGTTGGATGCTATTTTGGATCATGGAGAAGCTGCACCTGCAGTCAGCTGCGTAACCGACGATGGTTCTGCAAAATTCCTTGAGAAAATAATTTATCCTATTTATCAAACGCTATTTGAAGAAGCTGATAGAAACAACAATGGGAAAGCTGCACACTCAGCATGGAGGAATTATGATGACTTCAATGAATACTTTTGGTCGCGTGCTTGTTTTGAATTAAACTGGCCAATGAGGCCAAATTCACCTTTCTTGCGGAAACCTAAAAGAACTAAAAGGACTGGTAAAAGCAGTTTTGTTGAGCATAGAACATTTCTTCACTTGTATAGAAGTTTCCATCGTCTTTGGATCTTCTTGGCATTAATGTTTCAGGCTTTGACAATCATTGCTTTCAATCATGGACACATCAACTTGAATACTTTCAAAACAATACTTAGCATTGGGCCGTCATTTGCAATCATGAATTTTGTCAAGAGTTTCTTAGATGTGTTGCTTACTTTTGGGGCTTACACCACTGCAAGGGGCATGGCTGTTTCAAGACTAGTTATAAAGTTTTTCTGGGGTGGCTTGACTTCCGTGTTTGTAACATATGTTTACCTGAAGGTTTTGCAGGAGAGAAATAGCAATAGCTCTGACAATTCATTCTATTTCCGGATATACCTTCTTGTGCTTGGTGTTTATGCTGCTATACGTCTATTCCTTGCACTGTTGCTCAAATTTCCAGCTTGTCATGCACTTTCGGAAATGTCTGATCAGTTTTTCTTTCAGTTTTTTAAGTGGATTTATCAAGAACGATACTATGTTGGACGTGGTCTTTATGAGAGGATGAGTGATTACTGCAGGTATGTGGCCTTTTGGTTGGTGGTACTTGCCGTCAAATTTACTTTTGCTTACTTTCTCCAGATTAAACCTCTTGTCGAACCTACCAATATCATTGTTCATCTTCCATCTTTGCCTTACTCATGGCATGATTTGATATCAAGGAATAATTACAATGCCTTTACTATTCTTAGCTTGTGGGCTCCTGTTGTGGCTATTTATCTCATGGATATTCTCATTTTTTACACTATCATGTCAGCAATTGTTGGTGGTGTGAGTGGTGCGCGTGCTCGGCTAGGCGAGATTCGTTCAATTGAAATGGTGCATAGACGTTTTGAAAGTTTCCCAGGGGCATTTGTAAAAAATTTGGTCTCTCCACAAATAAAAAGGATTCCCTTGAGCGGACAATCAACCCAGGATTCTCAAGATATGAACAAAGCATATGCTGCCATGTTTGCTCCATTTTGGAATGAGATAATTAAAAGCCTGCGTGAGGAAGATTTTATTAGCAATAGGGAAATGGACTTGCTCTCAATTCCTAGTAATGCAGGAAGTCTGAGATTAGTTCAATGGCCTTTATTTCTTCTAAGCAGTAAGATCCTGTTGGCGATTGATTTGGCTTTGGACTGCAAAGATACTCAGACTGATCTGTGGAACAGGATATGTAGGGATGAGTATATGGCCTATGCAGTTAAGGAATGCTATTACAGTGTTGAAAAAATATTATATTCATTAGTTGACAACGAAGGAAGACTTTGGGTGGAGAGAATTTTTCGTGAGATCAATAACAGTATTATAGAGGGTTCGCTTGTTATAACCTTGTCTCTTAAGAAGCTTCCAGTTGTTTTATCAAGACTTACGGCATTGACCGGACTCCTGATTCGAAATGATCCTGAACTTGCTAAAGGTGCTGCAAAAGCTGTACATGACCTGTATGAAGTTGTTACTCATGAACTGGTATCTTCAGATTTAAGGGAGAATCTTGATACATGGAACCTTTTAGCTAGAGCTAGGGATGAGGGACGTCTTTTTTCTAGGATAGTATGGCCTAATGATCCTGAGATTAAAGAGCTTGTAAAGAGGTTGCATCTTCTTCTTACTGTAAAGGACTCTGCTGCTAATGTTCCAAAAAATCTTGAAGCCAGAAGAAGATTAGAGTTTTTCTCAAATTCATTATTTATGGACATGCCTTCAGCAAAGCCTGTTAGTGAAATGTTGCCATTCAGTGTTTTCACTCCATACTATAGTGAAACTGTGCTTTATAGTACTTCCGAATTGCAAAAAGAGAACGAAGATGGCATATCTATTCTTTTCTATCTTCAAAAGATATTTCCAGATGAATGGGAAAACTTTCTTGAAAGAATTGGTCGAGGAGCATCCACTGGGGACGCAGAACTTCAAGAAAATTCCAGTGACTCTTTGGAACTTCGTTTTTGGGCTTCTTATCGAGGGCAGACTCTGGCGAGGACAGTGCGTGGTATGATGTACTATAGGAGGGCTTTAATGCTGCAGAGCTTTCTGGAGAGCAGATCACTTGGAGTGGACAATTATTCTCAAAACAACTTCATTACAACTCAAGATTTTGAATCATCTCGCGAATCACGGGCACAGGCAGATTTGAAGTTTACTTATGTTGTATCATGCCAAATTTATGGTCAACAAAAGCAGCGAAAGGCACCAGAAGCTGCTGATATTGCTTTATTGTTACAGAGGAATGAGGCACTCCGAGTTGCTTTCATTCATGTTGATGAAAGTACAACTGATGGAAATACTTCAAAAGTGTTTTATTCAAAGCTTGTCAAAGCCGATATAAATGGAAAAGATCAGGAAATATATTCTATAAAACTTCCTGGAGATCCTAAGCTTGGGGAAGGAAAGCCTGAAAACCAAAACCATGCAATAGTTTTCACTCGTGGTGAAGCTGTTCAAACTATTGACATGAATCAGGACAATTATCTTGAAGAAGCAATGAAAATGAGGAATCTTCTGGAGGAGTTCCATGCGAATCATGGCCTTCGCCCTCCAAGCATTCTTGGAGTGAGGGAGCATGTTTTTACAGGAAGTGTCTCTTCCTTGGCTTGGTTCATGTCAAATCAAGAAACTAGCTTTGTAACCTTGGCCCAACGAGTTTTAGCAAATCCTCTCAAAGTTCGCATGCACTATGGACACCCAGATGTATTTGACCGAATATTTCACATAACTCGAGGAGGCATTAGTAAGGCATCACGTGTTATTAATATTAGTGAGGATATATACGCTGGTTTCAACTCCACATTGCGGCTGGGAAATGTCACACACCATGAATACATTCAGGTTGGAAAAGGAAGGGATGTTGGGTTAAACCAGATTGCCCTCTTTGAGGGGAAAGTGGCAGGTGGTAATGGAGAGCAAGTGCTTAGCAGGGACATTTACAGGCTTGGACAACTTTTTGATTTCTTCAGAATGCTTTCTTTCTTCTTCACAACTGTTGGTTATTATGTCTGCACCATGATGACAGTCCTTACAGTTTATATATTCTTATATGGAAGAGCATACCTGGCGTTTTCTGGTCTTGATGAAGCTGTCTCAGAGAAGGCAAAATTGCAGGGTAACACAGCACTTGATGCAGCTTTAAATGCTCAATTTTTGGTCCAGATTGGCGTTTTCACTGCAGTTCCAATGATAATGGGTTTTATACTTGAATTAGGATTGCTGAAGGCTGTTTTCAGTTTCATCACAATGCAACTACAATTGTGTTCTGTCTTCTTCACTTTCTCATTGGGAACTAGAACTCATTATTTTGGGCGTACCATTCTCCATGGGGGTGCAAAATATCGTGCTACTGGTAGAGGCTTTGTTGTCCGTCACATAAAGTTTGCTGAAAATTACAGACTATATTCTAGGAGCCACTTTGTCAAAGCGCTTGAGGTGGCATTGCTTCTTATAGTTTATATCGCATATGGGTATGCAGAGGGAGGTGCTGTTACGTATGTTTTGCTAACTCTAAGTAGTTGGTTCCTTGTCATTTCTTGGCTTTTCGCTCCTTACCTTTTCAACCCCTCTGGTTTCGAGTGGCAGAAGACTGTGGAAGATTTTGATGATTGGACAAGTTGGCTTCTTTACAAAGGAGGAGTAGGAGTAAAAGGAGAAAATAGTTGGGAGTCTTGGTGGGACGAAGAACAGATGCATATCCAAACTTGGAGGGGTCGTATTTTGGAGACAATTTTGAGTGCAAGGTTCTTCTTGTTTCAATATGGTGTTGTGTATAAGCTGCATCTTACTGGAAATGATACATCACTTGCGATCTATGGATTCTCATGGGCTGTCTTGGTTGGAATTGTCTTGATATTTAAGATCTTTGCCTACAGCCCAAAAAAGGCTGCTAATTTCCAGGTAGTGTTGCGATTTGCACAAGGGGTTGCATCTATAGGCCTTGTTGCAGCTGTGTGTCTTGTTGTTGCCTTTACTCAACTGTCGATAGCTGACCTTTTTGCAAGCATCCTTGCATTTATCCCTACTGGATGGGGAATATTATCTTTGGCAATTGCATGGAAGAAGATAGTTTGGAGTCTCGGCATGTGGGATTCTGTCCGTGAGTTTGCTAGAATGTATGACGCTGGAATGGGTATGATCATTTTTGCACCAATAGCATTTTTATCGTGGTTTCCATTCATTTCAACTTTCCAATCTCGCCTTCTCTTCAATCAAGCCTTCAGCCGTGGTCTTGAAATTTCTATCATCCTTGCTGGAAACAAAGCTAACGTTGAGACTTAG
Predicted protein sequences of Glyma06g18216
>Glyma06g18216.1   sequence type=predicted peptide   gene model=Glyma06g18216   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRARENWEKLVRATLKREQHRNAGQGHARVPSGIAGAVPPSLAQTTNIDLILQAADDIQSEDPNVARILCEQAYSMAQNLDPNSDGRGVLQFKTGLMSVIKQKLVKKDRVRIDRNHDIEHLWKFYQHYKQRHRVDDIQREEQRLQESGTFSSTTLGELKLRSSEMRKIIATLRALVEVLESLSKDADPSGVGGLIMEELRKIKKSSVTLSGELTPYNIIPLEAPSLTNPIRIFPEVKAAISAIRYTDQFPRLPAGLRISGQRDADMFDLLEFVFGFQKDNVRNQRENVVLMIANKQSRLGIPAETDPKIDEKTINEVFLKVLDNYIRWCRYLRIRLAWNSLEAINRDRKLFLVSLYFLIWGEAANVRFLPECICYIFHNMAKELDAILDHGEAAPAVSCVTDDGSAKFLEKIIYPIYQTLFEEADRNNNGKAAHSAWRNYDDFNEYFWSRACFELNWPMRPNSPFLRKPKRTKRTGKSSFVEHRTFLHLYRSFHRLWIFLALMFQALTIIAFNHGHINLNTFKTILSIGPSFAIMNFVKSFLDVLLTFGAYTTARGMAVSRLVIKFFWGGLTSVFVTYVYLKVLQERNSNSSDNSFYFRIYLLVLGVYAAIRLFLALLLKFPACHALSEMSDQFFFQFFKWIYQERYYVGRGLYERMSDYCRYVAFWLVVLAVKFTFAYFLQIKPLVEPTNIIVHLPSLPYSWHDLISRNNYNAFTILSLWAPVVAIYLMDILIFYTIMSAIVGGVSGARARLGEIRSIEMVHRRFESFPGAFVKNLVSPQIKRIPLSGQSTQDSQDMNKAYAAMFAPFWNEIIKSLREEDFISNREMDLLSIPSNAGSLRLVQWPLFLLSSKILLAIDLALDCKDTQTDLWNRICRDEYMAYAVKECYYSVEKILYSLVDNEGRLWVERIFREINNSIIEGSLVITLSLKKLPVVLSRLTALTGLLIRNDPELAKGAAKAVHDLYEVVTHELVSSDLRENLDTWNLLARARDEGRLFSRIVWPNDPEIKELVKRLHLLLTVKDSAANVPKNLEARRRLEFFSNSLFMDMPSAKPVSEMLPFSVFTPYYSETVLYSTSELQKENEDGISILFYLQKIFPDEWENFLERIGRGASTGDAELQENSSDSLELRFWASYRGQTLARTVRGMMYYRRALMLQSFLESRSLGVDNYSQNNFITTQDFESSRESRAQADLKFTYVVSCQIYGQQKQRKAPEAADIALLLQRNEALRVAFIHVDESTTDGNTSKVFYSKLVKADINGKDQEIYSIKLPGDPKLGEGKPENQNHAIVFTRGEAVQTIDMNQDNYLEEAMKMRNLLEEFHANHGLRPPSILGVREHVFTGSVSSLAWFMSNQETSFVTLAQRVLANPLKVRMHYGHPDVFDRIFHITRGGISKASRVINISEDIYAGFNSTLRLGNVTHHEYIQVGKGRDVGLNQIALFEGKVAGGNGEQVLSRDIYRLGQLFDFFRMLSFFFTTVGYYVCTMMTVLTVYIFLYGRAYLAFSGLDEAVSEKAKLQGNTALDAALNAQFLVQIGVFTAVPMIMGFILELGLLKAVFSFITMQLQLCSVFFTFSLGTRTHYFGRTILHGGAKYRATGRGFVVRHIKFAENYRLYSRSHFVKALEVALLLIVYIAYGYAEGGAVTYVLLTLSSWFLVISWLFAPYLFNPSGFEWQKTVEDFDDWTSWLLYKGGVGVKGENSWESWWDEEQMHIQTWRGRILETILSARFFLFQYGVVYKLHLTGNDTSLAIYGFSWAVLVGIVLIFKIFAYSPKKAANFQVVLRFAQGVASIGLVAAVCLVVAFTQLSIADLFASILAFIPTGWGILSLAIAWKKIVWSLGMWDSVREFARMYDAGMGMIIFAPIAFLSWFPFISTFQSRLLFNQAFSRGLEISIILAGNKANVET*






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